Wall clock time and date at job start Tue Mar 31 2020 18:26:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36939 * 119.99682 * 2 1 4 4 H 1.08004 * 119.99926 * 203.25131 * 3 2 1 5 5 C 1.38815 * 120.00087 * 23.25534 * 3 2 1 6 6 N 1.31609 * 119.99994 * 10.42227 * 5 3 2 7 7 Si 1.86801 * 119.99747 * 190.42402 * 5 3 2 8 8 H 1.48496 * 109.47094 * 59.99709 * 7 5 3 9 9 H 1.48498 * 109.46910 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47087 * 299.99699 * 7 5 3 11 11 C 1.46500 * 120.00071 * 179.97438 * 2 1 3 12 12 H 1.09006 * 110.63865 * 178.31470 * 11 2 1 13 13 C 1.55152 * 110.72378 * 301.45371 * 11 2 1 14 14 C 1.54913 * 101.57865 * 154.03899 * 13 11 2 15 15 N 1.47416 * 104.83622 * 322.99385 * 14 13 11 16 16 C 1.34776 * 125.64673 * 204.08766 * 15 14 13 17 17 O 1.21274 * 120.00572 * 4.27759 * 16 15 14 18 18 C 1.50701 * 119.99697 * 184.27282 * 16 15 14 19 19 H 1.08996 * 109.44668 * 318.47742 * 18 16 15 20 20 C 1.53126 * 109.41687 * 198.55920 * 18 16 15 21 21 C 1.53474 * 109.37765 * 170.21934 * 20 18 16 22 22 C 1.50794 * 108.08782 * 48.88190 * 21 20 18 23 23 N 1.29603 * 128.74095 * 164.03278 * 22 21 20 24 24 N 1.28868 * 109.79735 * 179.97438 * 23 22 21 25 25 C 1.31378 * 109.93175 * 0.36143 * 24 23 22 26 26 O 1.35530 * 126.58009 * 179.84209 * 25 24 23 27 27 N 1.35432 * 106.84207 * 359.57817 * 25 24 23 28 28 C 1.46195 * 129.14449 * 180.39221 * 27 25 24 29 29 C 1.47019 * 108.70305 * 24.35743 * 15 14 13 30 30 H 1.09002 * 109.47177 * 272.52817 * 1 2 3 31 31 H 1.08995 * 109.47109 * 32.53152 * 1 2 3 32 32 H 1.09006 * 109.46870 * 152.52943 * 1 2 3 33 33 H 0.97007 * 120.00171 * 180.02562 * 6 5 3 34 34 H 1.09001 * 111.00256 * 35.97007 * 13 11 2 35 35 H 1.08990 * 111.04250 * 272.13142 * 13 11 2 36 36 H 1.09001 * 110.36483 * 204.15262 * 14 13 11 37 37 H 1.09004 * 110.36406 * 81.83825 * 14 13 11 38 38 H 1.08996 * 109.48462 * 290.18995 * 20 18 16 39 39 H 1.08998 * 109.48211 * 50.24262 * 20 18 16 40 40 H 1.08996 * 109.73993 * 168.53295 * 21 20 18 41 41 H 1.09004 * 109.73508 * 289.23339 * 21 20 18 42 42 H 0.96703 * 113.99867 * 269.68097 * 26 25 24 43 43 H 1.08998 * 109.60371 * 282.69464 * 28 27 25 44 44 H 1.09008 * 109.60534 * 43.17732 * 28 27 25 45 45 H 1.08996 * 109.88667 * 118.12820 * 29 15 14 46 46 H 1.08999 * 109.88218 * 239.29521 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1639 1.2240 -0.3692 5 6 1.5401 2.3393 0.4746 6 7 0.3903 2.2620 1.1104 7 14 2.3518 4.0009 0.2109 8 1 2.5075 4.2503 -1.2446 9 1 1.5061 5.0653 0.8085 10 1 3.6875 4.0079 0.8600 11 6 2.1975 -1.2687 0.0006 12 1 3.2727 -1.0916 -0.0295 13 6 1.8163 -2.1222 1.2389 14 6 2.1054 -3.5562 0.7290 15 7 1.6994 -3.5420 -0.6881 16 6 1.3361 -4.6193 -1.4119 17 8 1.2506 -5.7061 -0.8806 18 6 1.0362 -4.4734 -2.8815 19 1 0.4608 -3.5623 -3.0457 20 6 0.2247 -5.6814 -3.3579 21 6 -0.2882 -5.4213 -4.7807 22 6 0.8716 -4.9407 -5.6160 23 7 0.9685 -4.8728 -6.9066 24 7 2.1239 -4.4050 -7.2336 25 6 2.8288 -4.1570 -6.1530 26 8 4.0895 -3.6616 -6.1071 27 7 2.0518 -4.4859 -5.0936 28 6 2.3520 -4.3958 -3.6656 29 6 1.7627 -2.1590 -1.1828 30 1 -0.3634 0.0453 1.0267 31 1 -0.3633 0.8664 -0.5526 32 1 -0.3633 -0.9119 -0.4741 33 1 -0.0358 3.0680 1.4418 34 1 0.7619 -2.0011 1.4872 35 1 2.4474 -1.8766 2.0928 36 1 1.5141 -4.2832 1.2858 37 1 3.1679 -3.7831 0.8171 38 1 0.8582 -6.5684 -3.3562 39 1 -0.6216 -5.8375 -2.6890 40 1 -0.6883 -6.3434 -5.2022 41 1 -1.0664 -4.6583 -4.7577 42 1 4.7789 -4.3396 -6.1114 43 1 3.0003 -5.2225 -3.3753 44 1 2.8477 -3.4480 -3.4552 45 1 2.4910 -2.0871 -1.9905 46 1 0.7805 -1.8469 -1.5376 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971816996.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:18 Heat of formation + Delta-G solvation = 18.564112 kcal Electronic energy + Delta-G solvation = -29890.697025 eV Core-core repulsion = 25817.341042 eV Total energy + Delta-G solvation = -4073.355983 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -44.35635 -41.43704 -39.26502 -38.74836 -37.80718 -36.51009 -34.37644 -33.49302 -32.55818 -31.16952 -29.79733 -29.30161 -28.05701 -26.40360 -25.24734 -24.55517 -23.44560 -23.37705 -21.23846 -21.06186 -20.19280 -19.74509 -18.94837 -18.43143 -18.06006 -17.67832 -17.26943 -16.70411 -16.32763 -15.95197 -15.68133 -15.62073 -15.33636 -15.12429 -15.02419 -14.68894 -14.40122 -14.15951 -13.91366 -13.59478 -13.38670 -13.19209 -13.01005 -12.88151 -12.83293 -12.80136 -12.53218 -12.37353 -12.29320 -12.27453 -12.10226 -12.05285 -11.83178 -11.53653 -11.35667 -11.25346 -10.99883 -10.62003 -10.14798 -9.70117 -8.80227 -7.84048 -5.32516 0.51502 0.92387 1.43877 1.49081 1.50883 1.56509 1.57475 1.84812 2.50495 2.66622 3.07474 3.12714 3.30507 3.32317 3.42246 3.62078 3.77260 3.86396 3.89317 3.99151 4.07291 4.21200 4.28520 4.30876 4.33607 4.43634 4.51046 4.59363 4.68103 4.78297 4.80711 4.90384 4.94065 4.95569 4.97742 5.08282 5.13731 5.24829 5.33712 5.39545 5.51143 5.65086 5.74063 6.31140 6.39012 6.42918 6.97487 7.14753 7.49194 7.84931 8.28151 9.19604 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012329 B = 0.003269 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2270.575522 B = 8564.272658 C = 9805.860035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.180 3.820 2 N -0.601 5.601 3 C -0.265 4.265 4 H 0.077 0.923 5 C -0.047 4.047 6 N -0.937 5.937 7 Si 0.964 3.036 8 H -0.280 1.280 9 H -0.299 1.299 10 H -0.275 1.275 11 C 0.164 3.836 12 H 0.084 0.916 13 C -0.143 4.143 14 C 0.114 3.886 15 N -0.608 5.608 16 C 0.542 3.458 17 O -0.564 6.564 18 C -0.115 4.115 19 H 0.112 0.888 20 C -0.099 4.099 21 C -0.028 4.028 22 C 0.198 3.802 23 N -0.311 5.311 24 N -0.330 5.330 25 C 0.359 3.641 26 O -0.437 6.437 27 N -0.479 5.479 28 C 0.122 3.878 29 C 0.089 3.911 30 H 0.000 1.000 31 H 0.019 0.981 32 H 0.028 0.972 33 H 0.247 0.753 34 H 0.055 0.945 35 H 0.080 0.920 36 H 0.073 0.927 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.100 0.900 40 H 0.128 0.872 41 H 0.115 0.885 42 H 0.429 0.571 43 H 0.111 0.889 44 H 0.110 0.890 45 H 0.082 0.918 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.902 -17.166 -7.337 19.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.322 5.322 3 C -0.395 4.395 4 H 0.095 0.905 5 C -0.242 4.242 6 N -0.583 5.583 7 Si 0.793 3.207 8 H -0.206 1.206 9 H -0.225 1.225 10 H -0.200 1.200 11 C 0.055 3.945 12 H 0.103 0.897 13 C -0.183 4.183 14 C -0.008 4.008 15 N -0.340 5.340 16 C 0.330 3.670 17 O -0.444 6.444 18 C -0.136 4.136 19 H 0.130 0.870 20 C -0.137 4.137 21 C -0.067 4.067 22 C -0.070 4.070 23 N -0.152 5.152 24 N -0.181 5.181 25 C 0.053 3.947 26 O -0.240 6.240 27 N -0.182 5.182 28 C -0.001 4.001 29 C -0.036 4.036 30 H 0.018 0.982 31 H 0.037 0.963 32 H 0.046 0.954 33 H 0.057 0.943 34 H 0.074 0.926 35 H 0.099 0.901 36 H 0.092 0.908 37 H 0.104 0.896 38 H 0.100 0.900 39 H 0.119 0.881 40 H 0.147 0.853 41 H 0.133 0.867 42 H 0.291 0.709 43 H 0.129 0.871 44 H 0.128 0.872 45 H 0.100 0.900 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.318 -17.135 -8.473 19.401 hybrid contribution 0.977 1.271 1.524 2.211 sum 4.294 -15.865 -6.949 17.844 Atomic orbital electron populations 1.20461 0.82853 0.95879 0.97249 1.44010 1.01871 1.00925 1.85434 1.19546 0.98805 0.86487 1.34666 0.90502 1.25726 0.98288 1.01696 0.98527 1.70207 1.19219 1.27676 1.41238 0.85387 0.77757 0.79812 0.77732 1.20583 1.22545 1.20040 1.21478 0.96325 0.84715 0.91962 0.89738 1.23222 1.01672 0.93852 0.99603 1.22226 1.00712 0.97140 0.80737 1.48559 1.65368 1.07441 1.12675 1.19960 0.76233 0.82505 0.88256 1.90709 1.53831 1.26691 1.73126 1.21622 0.97476 1.03805 0.90726 0.87025 1.21533 1.01007 0.95944 0.95253 1.20513 0.90780 1.04548 0.90856 1.25301 0.90167 1.00207 0.91374 1.73933 1.11799 1.18391 1.11043 1.74745 1.01329 1.19260 1.22744 1.21858 0.89185 1.00297 0.83316 1.84900 1.09412 1.35359 1.94371 1.46666 1.14368 1.48463 1.08681 1.21933 0.97488 1.06099 0.74567 1.22648 1.02146 0.80158 0.98611 0.98169 0.96260 0.95354 0.94348 0.92622 0.90145 0.90842 0.89628 0.90048 0.88129 0.85349 0.86712 0.70895 0.87137 0.87208 0.89971 0.91421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.11 7.71 127.77 0.98 9.09 16 2 N -0.60 -26.42 2.94 -696.11 -2.05 -28.47 16 3 C -0.27 -13.20 9.62 84.03 0.81 -12.39 16 4 H 0.08 3.64 7.83 -2.91 -0.02 3.62 16 5 C -0.05 -2.46 5.13 84.86 0.44 -2.03 16 6 N -0.94 -52.59 10.60 21.65 0.23 -52.36 16 7 Si 0.96 42.67 29.57 68.60 2.03 44.70 16 8 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 9 H -0.30 -13.57 7.11 99.48 0.71 -12.87 16 10 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 11 C 0.16 5.37 3.42 46.18 0.16 5.53 16 12 H 0.08 2.70 7.93 -2.38 -0.02 2.68 16 13 C -0.14 -4.25 6.65 31.99 0.21 -4.04 16 14 C 0.11 2.73 6.93 86.86 0.60 3.33 16 15 N -0.61 -14.21 3.33 -811.80 -2.70 -16.91 16 16 C 0.54 11.97 6.98 87.66 0.61 12.59 16 17 O -0.56 -15.64 16.37 -3.01 -0.05 -15.69 16 18 C -0.11 -1.87 1.95 -11.37 -0.02 -1.89 16 19 H 0.11 1.82 7.49 -2.39 -0.02 1.80 16 20 C -0.10 -1.34 4.59 30.80 0.14 -1.20 16 21 C -0.03 -0.35 6.34 30.04 0.19 -0.16 16 22 C 0.20 4.08 7.78 137.83 1.07 5.15 16 23 N -0.31 -8.55 12.17 -49.73 -0.61 -9.15 16 24 N -0.33 -9.54 12.24 -173.86 -2.13 -11.67 16 25 C 0.36 8.16 9.30 179.88 1.67 9.83 16 26 O -0.44 -7.42 13.64 -88.34 -1.21 -8.62 16 27 N -0.48 -9.24 3.16 -630.16 -1.99 -11.23 16 28 C 0.12 1.82 6.32 86.56 0.55 2.37 16 29 C 0.09 2.28 5.80 86.73 0.50 2.78 16 30 H 0.00 0.00 7.50 -2.39 -0.02 -0.02 16 31 H 0.02 0.95 7.11 -2.39 -0.02 0.93 16 32 H 0.03 1.07 6.25 -2.38 -0.01 1.05 16 33 H 0.25 13.69 8.31 -92.70 -0.77 12.92 16 34 H 0.05 1.89 7.28 -2.39 -0.02 1.87 16 35 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 36 H 0.07 1.80 8.00 -2.39 -0.02 1.78 16 37 H 0.09 1.76 8.14 -2.38 -0.02 1.74 16 38 H 0.08 1.15 8.12 -2.39 -0.02 1.13 16 39 H 0.10 1.32 8.07 -2.39 -0.02 1.30 16 40 H 0.13 1.18 8.14 -2.39 -0.02 1.17 16 41 H 0.11 1.21 8.14 -2.38 -0.02 1.19 16 42 H 0.43 2.32 9.06 -74.06 -0.67 1.65 16 43 H 0.11 1.38 8.12 -2.39 -0.02 1.36 16 44 H 0.11 1.60 6.75 -2.38 -0.02 1.59 16 45 H 0.08 1.80 6.75 -2.39 -0.02 1.78 16 46 H 0.07 1.89 5.91 -2.39 -0.01 1.88 16 Total: -1.00 -71.67 366.91 -0.20 -71.87 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: 0.35 Total: 8.54 kcal Atomic # 6 Polarization: 21.06 SS G_CDS: 7.92 Total: 28.97 kcal Atomic # 7 Polarization: -120.54 SS G_CDS: -9.24 Total: -129.78 kcal Atomic # 8 Polarization: -23.05 SS G_CDS: -1.25 Total: -24.31 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Total: -71.67 -0.20 -71.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971816996.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.434 kcal (2) G-P(sol) polarization free energy of solvation -71.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds