Wall clock time and date at job start Tue Mar 31 2020 18:26:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36941 * 119.99939 * 2 1 4 4 H 1.07996 * 120.00047 * 200.41290 * 3 2 1 5 5 C 1.38814 * 119.99775 * 20.41259 * 3 2 1 6 6 N 1.31623 * 120.00135 * 15.01887 * 5 3 2 7 7 Si 1.86805 * 119.99846 * 195.01409 * 5 3 2 8 8 H 1.48498 * 109.46737 * 85.00258 * 7 5 3 9 9 H 1.48496 * 109.47097 * 205.00328 * 7 5 3 10 10 H 1.48504 * 109.47010 * 325.00181 * 7 5 3 11 11 C 1.46498 * 120.00192 * 180.02562 * 2 1 3 12 12 H 1.09000 * 110.77779 * 178.21320 * 11 2 1 13 13 C 1.55157 * 110.71888 * 54.97417 * 11 2 1 14 14 C 1.55131 * 101.48616 * 205.96881 * 13 11 2 15 15 N 1.47422 * 104.72228 * 37.29743 * 14 13 11 16 16 C 1.34774 * 125.64967 * 155.81783 * 15 14 13 17 17 O 1.21599 * 120.00170 * 179.69469 * 16 15 14 18 18 C 1.47517 * 120.00037 * 359.68895 * 16 15 14 19 19 C 1.36592 * 125.77419 * 180.02562 * 18 16 15 20 20 N 1.34815 * 106.84597 * 180.02562 * 19 18 16 21 21 C 1.46490 * 126.59763 * 179.97438 * 20 19 18 22 22 H 1.09006 * 110.45831 * 152.41935 * 21 20 19 23 23 C 1.54510 * 110.51411 * 275.02426 * 21 20 19 24 24 C 1.54478 * 104.06301 * 118.64419 * 23 21 20 25 25 O 1.44427 * 104.80341 * 23.98183 * 24 23 21 26 26 C 1.44426 * 105.27157 * 319.48802 * 25 24 23 27 27 N 1.40209 * 106.80621 * 359.97438 * 20 19 18 28 28 N 1.28761 * 108.36872 * 0.02562 * 27 20 19 29 29 C 1.47031 * 108.70100 * 335.55337 * 15 14 13 30 30 H 1.09008 * 109.47103 * 275.17122 * 1 2 3 31 31 H 1.08998 * 109.47254 * 35.16470 * 1 2 3 32 32 H 1.08999 * 109.47124 * 155.17348 * 1 2 3 33 33 H 0.96995 * 119.99640 * 179.97438 * 6 5 3 34 34 H 1.09004 * 111.00506 * 324.21331 * 13 11 2 35 35 H 1.09003 * 111.00369 * 88.02421 * 13 11 2 36 36 H 1.08997 * 110.49568 * 278.45724 * 14 13 11 37 37 H 1.08997 * 110.34222 * 156.06066 * 14 13 11 38 38 H 1.08004 * 126.57820 * 0.02562 * 19 18 16 39 39 H 1.09002 * 110.51098 * 237.29298 * 23 21 20 40 40 H 1.08998 * 110.51086 * 359.86152 * 23 21 20 41 41 H 1.09002 * 110.36842 * 142.80806 * 24 23 21 42 42 H 1.08996 * 110.37346 * 265.14802 * 24 23 21 43 43 H 1.09001 * 110.37163 * 281.67950 * 26 25 24 44 44 H 1.09006 * 110.36880 * 159.34693 * 26 25 24 45 45 H 1.08994 * 109.88186 * 120.70765 * 29 15 14 46 46 H 1.09005 * 109.87784 * 241.86807 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1788 1.2153 -0.3262 5 6 1.5209 2.3503 0.4193 6 7 0.3885 2.2831 1.0869 7 14 2.2820 4.0127 0.0362 8 1 1.8661 4.4463 -1.3219 9 1 1.8228 5.0097 1.0363 10 1 3.7620 3.9036 0.0894 11 6 2.1975 -1.2687 -0.0006 12 1 3.2730 -1.0942 -0.0323 13 6 1.7507 -2.1600 -1.1894 14 6 2.0692 -3.5787 -0.6486 15 7 1.7324 -3.5174 0.7854 16 6 1.4057 -4.5698 1.5612 17 8 1.1508 -4.4017 2.7382 18 6 1.3572 -5.9259 0.9825 19 6 1.0413 -7.0710 1.6568 20 7 1.1142 -8.0811 0.7670 21 6 0.8585 -9.4989 1.0323 22 1 0.5142 -9.9998 0.1275 23 6 2.1298 -10.1851 1.5805 24 6 1.7144 -10.6785 2.9842 25 8 0.2774 -10.8076 2.9197 26 6 -0.1745 -9.6591 2.1696 27 7 1.4819 -7.5137 -0.4613 28 7 1.6166 -6.2436 -0.2974 29 6 1.8182 -2.1186 1.2304 30 1 -0.3634 0.0926 1.0236 31 1 -0.3634 0.8401 -0.5918 32 1 -0.3633 -0.9327 -0.4315 33 1 -0.0505 3.0967 1.3802 34 1 0.6849 -2.0434 -1.3862 35 1 2.3368 -1.9429 -2.0824 36 1 3.1263 -3.8089 -0.7805 37 1 1.4522 -4.3233 -1.1516 38 1 0.7827 -7.1517 2.7023 39 1 2.4125 -11.0266 0.9480 40 1 2.9492 -9.4699 1.6518 41 1 2.1729 -11.6440 3.1980 42 1 1.9961 -9.9476 3.7421 43 1 -0.1825 -8.7717 2.8026 44 1 -1.1671 -9.8414 1.7578 45 1 0.8541 -1.7944 1.6220 46 1 2.5849 -2.0206 1.9990 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972692307.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:02 Heat of formation + Delta-G solvation = 68.449911 kcal Electronic energy + Delta-G solvation = -28957.098103 eV Core-core repulsion = 24885.905330 eV Total energy + Delta-G solvation = -4071.192772 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.56899 -40.10285 -39.39564 -37.32906 -35.15527 -34.69598 -31.77714 -31.68284 -30.88434 -29.66720 -29.44907 -27.83257 -26.02257 -24.95707 -24.02407 -23.37554 -22.54391 -22.05245 -21.27800 -19.82076 -19.11970 -18.02227 -17.32360 -17.01022 -16.63487 -16.20386 -15.97490 -15.76272 -15.45951 -15.08466 -14.86605 -14.65789 -13.99639 -13.94406 -13.32200 -13.29943 -13.21142 -12.89414 -12.70499 -12.54950 -12.27996 -12.16914 -12.09559 -11.88244 -11.70826 -11.59088 -11.09504 -10.88323 -10.75652 -10.66096 -10.58938 -10.49638 -10.40853 -10.21554 -9.92692 -9.80658 -9.74556 -9.49711 -8.54252 -8.24395 -6.81248 -5.73317 -3.18449 0.84720 1.55504 1.62924 3.11533 3.17903 3.38175 3.39719 3.45771 3.46921 3.62997 3.68571 3.98071 4.05468 4.25174 4.35459 4.46254 4.51295 4.62914 4.79978 4.89670 5.01342 5.03449 5.08922 5.15099 5.16818 5.30276 5.39994 5.53071 5.67299 5.74345 5.82164 5.95248 6.01939 6.09068 6.19480 6.41366 6.46971 6.61378 6.70505 6.86827 6.92975 7.38346 7.68162 7.73524 7.81307 7.82683 8.32333 8.37709 9.21273 9.84416 10.32591 11.31229 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.034186 B = 0.002154 C = 0.002103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.858493 B =12994.102876 C =13312.111268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.159 3.841 2 N -0.586 5.586 3 C -0.259 4.259 4 H 0.072 0.928 5 C 0.002 3.998 6 N -0.904 5.904 7 Si 0.907 3.093 8 H -0.287 1.287 9 H -0.292 1.292 10 H -0.280 1.280 11 C 0.173 3.827 12 H 0.079 0.921 13 C -0.154 4.154 14 C 0.102 3.898 15 N -0.594 5.594 16 C 0.607 3.393 17 O -0.545 6.545 18 C -0.082 4.082 19 C 0.085 3.915 20 N -0.358 5.358 21 C 0.118 3.882 22 H 0.130 0.870 23 C -0.167 4.167 24 C 0.041 3.959 25 O -0.360 6.360 26 C 0.036 3.964 27 N -0.065 5.065 28 N -0.197 5.197 29 C 0.088 3.912 30 H 0.031 0.969 31 H 0.044 0.956 32 H 0.003 0.997 33 H 0.253 0.747 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.065 0.935 37 H 0.088 0.912 38 H 0.203 0.797 39 H 0.098 0.902 40 H 0.091 0.909 41 H 0.104 0.896 42 H 0.069 0.931 43 H 0.077 0.923 44 H 0.114 0.886 45 H 0.075 0.925 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.509 -27.450 -0.054 27.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.306 5.306 3 C -0.389 4.389 4 H 0.089 0.911 5 C -0.196 4.196 6 N -0.549 5.549 7 Si 0.737 3.263 8 H -0.214 1.214 9 H -0.218 1.218 10 H -0.205 1.205 11 C 0.062 3.938 12 H 0.097 0.903 13 C -0.194 4.194 14 C -0.021 4.021 15 N -0.326 5.326 16 C 0.393 3.607 17 O -0.423 6.423 18 C -0.221 4.221 19 C -0.071 4.071 20 N -0.144 5.144 21 C 0.015 3.985 22 H 0.148 0.852 23 C -0.205 4.205 24 C -0.035 4.035 25 O -0.277 6.277 26 C -0.043 4.043 27 N -0.044 5.044 28 N -0.071 5.071 29 C -0.037 4.037 30 H 0.049 0.951 31 H 0.063 0.937 32 H 0.021 0.979 33 H 0.064 0.936 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.084 0.916 37 H 0.106 0.894 38 H 0.219 0.781 39 H 0.117 0.883 40 H 0.109 0.891 41 H 0.122 0.878 42 H 0.087 0.913 43 H 0.095 0.905 44 H 0.132 0.868 45 H 0.094 0.906 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.406 -27.700 -0.685 27.744 hybrid contribution 0.250 1.116 0.813 1.403 sum 1.656 -26.584 0.127 26.636 Atomic orbital electron populations 1.20812 0.82377 0.95702 0.99595 1.43952 1.01951 0.99932 1.84809 1.19239 0.97168 0.84733 1.37716 0.91059 1.25007 0.97868 0.98488 0.98270 1.70097 1.18824 1.26964 1.38991 0.86238 0.78639 0.83843 0.77586 1.21439 1.21787 1.20519 1.21366 0.96398 0.85835 0.90197 0.90288 1.23419 1.02713 0.93441 0.99851 1.22562 1.00574 0.98876 0.80065 1.48320 1.65510 1.07495 1.11267 1.16389 0.77936 0.81434 0.84970 1.90809 1.51495 1.84747 1.15264 1.21534 1.13964 0.95925 0.90697 1.23225 0.98803 0.86831 0.98242 1.50468 1.47432 1.07795 1.08705 1.23027 0.97162 0.76083 1.02217 0.85194 1.23435 0.97167 1.02019 0.97923 1.23542 0.81381 1.02936 0.95668 1.89251 1.20556 1.43371 1.74533 1.23874 0.98133 0.91112 0.91155 1.82035 1.19861 1.01491 1.01026 1.74758 1.11086 1.05544 1.15711 1.22998 1.02528 0.78197 0.99939 0.95094 0.93683 0.97868 0.93646 0.90509 0.90403 0.91641 0.89398 0.78065 0.88294 0.89057 0.87823 0.91267 0.90480 0.86817 0.90640 0.91956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.91 7.74 59.85 0.46 4.38 16 2 N -0.59 -14.41 2.94 -171.39 -0.50 -14.92 16 3 C -0.26 -6.99 9.64 -15.06 -0.15 -7.13 16 4 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 5 C 0.00 0.07 5.06 -17.43 -0.09 -0.02 16 6 N -0.90 -26.28 10.67 55.49 0.59 -25.69 16 7 Si 0.91 21.71 29.58 -169.99 -5.03 16.69 16 8 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 9 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 C 0.17 3.47 3.44 -66.10 -0.23 3.24 16 12 H 0.08 1.56 7.92 -51.93 -0.41 1.15 16 13 C -0.15 -2.58 6.60 -24.46 -0.16 -2.74 16 14 C 0.10 1.56 6.14 -2.41 -0.01 1.54 16 15 N -0.59 -10.36 3.32 -171.61 -0.57 -10.93 16 16 C 0.61 10.42 7.85 -12.48 -0.10 10.32 16 17 O -0.55 -10.70 17.19 5.28 0.09 -10.61 16 18 C -0.08 -1.14 6.84 -83.55 -0.57 -1.71 16 19 C 0.08 0.87 10.27 -16.84 -0.17 0.70 16 20 N -0.36 -3.21 3.54 -53.05 -0.19 -3.40 16 21 C 0.12 0.65 4.28 -66.37 -0.28 0.36 16 22 H 0.13 0.57 8.14 -51.93 -0.42 0.15 16 23 C -0.17 -0.72 6.88 -25.16 -0.17 -0.89 16 24 C 0.04 0.18 7.63 37.93 0.29 0.47 16 25 O -0.36 -2.28 11.65 -35.23 -0.41 -2.69 16 26 C 0.04 0.18 7.18 37.93 0.27 0.45 16 27 N -0.06 -0.78 13.78 60.35 0.83 0.05 16 28 N -0.20 -2.73 9.39 32.84 0.31 -2.42 16 29 C 0.09 1.74 6.50 -3.06 -0.02 1.72 16 30 H 0.03 0.83 7.32 -51.92 -0.38 0.45 16 31 H 0.04 1.18 7.22 -51.93 -0.38 0.81 16 32 H 0.00 0.06 6.13 -51.93 -0.32 -0.25 16 33 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 34 H 0.08 1.37 6.14 -51.93 -0.32 1.05 16 35 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.09 1.29 6.12 -51.93 -0.32 0.98 16 38 H 0.20 1.54 6.88 -52.48 -0.36 1.18 16 39 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.09 0.49 7.96 -51.93 -0.41 0.07 16 41 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 42 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 43 H 0.08 0.37 5.97 -51.93 -0.31 0.06 16 44 H 0.11 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.08 1.69 7.06 -51.93 -0.37 1.32 16 46 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 369.43 15.07 5.57 5.57 Total: -1.00 -33.28 369.43 -6.74 -40.03 By element: Atomic # 1 Polarization: 4.17 SS G_CDS: -6.50 Total: -2.33 kcal Atomic # 6 Polarization: 11.59 SS G_CDS: -0.93 Total: 10.66 kcal Atomic # 7 Polarization: -57.78 SS G_CDS: 0.47 Total: -57.30 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: -0.32 Total: -13.30 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.03 Total: 16.69 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.28 -6.74 -40.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972692307.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.475 kcal (2) G-P(sol) polarization free energy of solvation -33.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds