Wall clock time and date at job start Tue Mar 31 2020 18:26:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36941 * 119.99939 * 2 1 4 4 H 1.07996 * 120.00047 * 200.41290 * 3 2 1 5 5 C 1.38814 * 119.99775 * 20.41259 * 3 2 1 6 6 N 1.31623 * 120.00135 * 15.01887 * 5 3 2 7 7 Si 1.86805 * 119.99846 * 195.01409 * 5 3 2 8 8 H 1.48498 * 109.46737 * 85.00258 * 7 5 3 9 9 H 1.48496 * 109.47097 * 205.00328 * 7 5 3 10 10 H 1.48504 * 109.47010 * 325.00181 * 7 5 3 11 11 C 1.46498 * 120.00192 * 180.02562 * 2 1 3 12 12 H 1.09000 * 110.77779 * 178.21320 * 11 2 1 13 13 C 1.55157 * 110.71888 * 54.97417 * 11 2 1 14 14 C 1.55131 * 101.48616 * 205.96881 * 13 11 2 15 15 N 1.47422 * 104.72228 * 37.29743 * 14 13 11 16 16 C 1.34774 * 125.64967 * 155.81783 * 15 14 13 17 17 O 1.21599 * 120.00170 * 179.69469 * 16 15 14 18 18 C 1.47517 * 120.00037 * 359.68895 * 16 15 14 19 19 C 1.36592 * 125.77419 * 180.02562 * 18 16 15 20 20 N 1.34815 * 106.84597 * 180.02562 * 19 18 16 21 21 C 1.46490 * 126.59763 * 179.97438 * 20 19 18 22 22 H 1.09006 * 110.45831 * 152.41935 * 21 20 19 23 23 C 1.54510 * 110.51411 * 275.02426 * 21 20 19 24 24 C 1.54478 * 104.06301 * 118.64419 * 23 21 20 25 25 O 1.44427 * 104.80341 * 23.98183 * 24 23 21 26 26 C 1.44426 * 105.27157 * 319.48802 * 25 24 23 27 27 N 1.40209 * 106.80621 * 359.97438 * 20 19 18 28 28 N 1.28761 * 108.36872 * 0.02562 * 27 20 19 29 29 C 1.47031 * 108.70100 * 335.55337 * 15 14 13 30 30 H 1.09008 * 109.47103 * 275.17122 * 1 2 3 31 31 H 1.08998 * 109.47254 * 35.16470 * 1 2 3 32 32 H 1.08999 * 109.47124 * 155.17348 * 1 2 3 33 33 H 0.96995 * 119.99640 * 179.97438 * 6 5 3 34 34 H 1.09004 * 111.00506 * 324.21331 * 13 11 2 35 35 H 1.09003 * 111.00369 * 88.02421 * 13 11 2 36 36 H 1.08997 * 110.49568 * 278.45724 * 14 13 11 37 37 H 1.08997 * 110.34222 * 156.06066 * 14 13 11 38 38 H 1.08004 * 126.57820 * 0.02562 * 19 18 16 39 39 H 1.09002 * 110.51098 * 237.29298 * 23 21 20 40 40 H 1.08998 * 110.51086 * 359.86152 * 23 21 20 41 41 H 1.09002 * 110.36842 * 142.80806 * 24 23 21 42 42 H 1.08996 * 110.37346 * 265.14802 * 24 23 21 43 43 H 1.09001 * 110.37163 * 281.67950 * 26 25 24 44 44 H 1.09006 * 110.36880 * 159.34693 * 26 25 24 45 45 H 1.08994 * 109.88186 * 120.70765 * 29 15 14 46 46 H 1.09005 * 109.87784 * 241.86807 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1788 1.2153 -0.3262 5 6 1.5209 2.3503 0.4193 6 7 0.3885 2.2831 1.0869 7 14 2.2820 4.0127 0.0362 8 1 1.8661 4.4463 -1.3219 9 1 1.8228 5.0097 1.0363 10 1 3.7620 3.9036 0.0894 11 6 2.1975 -1.2687 -0.0006 12 1 3.2730 -1.0942 -0.0323 13 6 1.7507 -2.1600 -1.1894 14 6 2.0692 -3.5787 -0.6486 15 7 1.7324 -3.5174 0.7854 16 6 1.4057 -4.5698 1.5612 17 8 1.1508 -4.4017 2.7382 18 6 1.3572 -5.9259 0.9825 19 6 1.0413 -7.0710 1.6568 20 7 1.1142 -8.0811 0.7670 21 6 0.8585 -9.4989 1.0323 22 1 0.5142 -9.9998 0.1275 23 6 2.1298 -10.1851 1.5805 24 6 1.7144 -10.6785 2.9842 25 8 0.2774 -10.8076 2.9197 26 6 -0.1745 -9.6591 2.1696 27 7 1.4819 -7.5137 -0.4613 28 7 1.6166 -6.2436 -0.2974 29 6 1.8182 -2.1186 1.2304 30 1 -0.3634 0.0926 1.0236 31 1 -0.3634 0.8401 -0.5918 32 1 -0.3633 -0.9327 -0.4315 33 1 -0.0505 3.0967 1.3802 34 1 0.6849 -2.0434 -1.3862 35 1 2.3368 -1.9429 -2.0824 36 1 3.1263 -3.8089 -0.7805 37 1 1.4522 -4.3233 -1.1516 38 1 0.7827 -7.1517 2.7023 39 1 2.4125 -11.0266 0.9480 40 1 2.9492 -9.4699 1.6518 41 1 2.1729 -11.6440 3.1980 42 1 1.9961 -9.9476 3.7421 43 1 -0.1825 -8.7717 2.8026 44 1 -1.1671 -9.8414 1.7578 45 1 0.8541 -1.7944 1.6220 46 1 2.5849 -2.0206 1.9990 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972692307.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:01 Heat of formation + Delta-G solvation = 45.146680 kcal Electronic energy + Delta-G solvation = -28958.108606 eV Core-core repulsion = 24885.905330 eV Total energy + Delta-G solvation = -4072.203276 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.45275 -40.96795 -40.38743 -38.87106 -36.58068 -35.75763 -33.50588 -32.37608 -31.92520 -31.12810 -30.01466 -29.31807 -28.06077 -26.10642 -24.97632 -24.37703 -23.72833 -23.19961 -21.95285 -21.02803 -20.66183 -18.94474 -18.92266 -17.77713 -17.71102 -17.51835 -16.88587 -16.82302 -16.37976 -16.31305 -15.98667 -15.58129 -15.45420 -15.04712 -14.83259 -14.48989 -14.39079 -14.10436 -13.80306 -13.71221 -13.41815 -13.32261 -13.30367 -13.02408 -12.74450 -12.60629 -12.55568 -12.38211 -12.27834 -12.11334 -12.06624 -12.05082 -11.75118 -11.42176 -11.32535 -11.28554 -10.97771 -10.61197 -10.47107 -9.66952 -8.83709 -7.82007 -5.29730 0.00199 0.53975 0.84006 1.49609 1.50915 1.59213 1.86857 2.13757 2.52713 2.74292 2.97832 3.23782 3.27237 3.29899 3.45728 3.57369 3.67312 3.82088 3.86696 3.87225 4.03555 4.09457 4.13693 4.29973 4.33778 4.42702 4.49395 4.53916 4.60091 4.69886 4.76609 4.77243 4.81007 4.88784 4.97844 5.06752 5.20208 5.22978 5.25290 5.32888 5.42979 5.60647 5.65599 5.71194 6.31245 6.43735 6.74187 7.01748 7.13827 7.84746 8.29216 9.21355 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.034186 B = 0.002154 C = 0.002103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.858493 B =12994.102876 C =13312.111268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.179 3.821 2 N -0.601 5.601 3 C -0.264 4.264 4 H 0.080 0.920 5 C -0.056 4.056 6 N -0.940 5.940 7 Si 0.972 3.028 8 H -0.284 1.284 9 H -0.299 1.299 10 H -0.267 1.267 11 C 0.167 3.833 12 H 0.086 0.914 13 C -0.140 4.140 14 C 0.113 3.887 15 N -0.599 5.599 16 C 0.607 3.393 17 O -0.578 6.578 18 C -0.109 4.109 19 C 0.107 3.893 20 N -0.340 5.340 21 C 0.111 3.889 22 H 0.146 0.854 23 C -0.161 4.161 24 C 0.039 3.961 25 O -0.376 6.376 26 C 0.036 3.964 27 N -0.073 5.073 28 N -0.212 5.212 29 C 0.100 3.900 30 H -0.002 1.002 31 H 0.020 0.980 32 H 0.030 0.970 33 H 0.248 0.752 34 H 0.066 0.934 35 H 0.099 0.901 36 H 0.083 0.917 37 H 0.098 0.902 38 H 0.227 0.773 39 H 0.115 0.885 40 H 0.082 0.918 41 H 0.119 0.881 42 H 0.070 0.930 43 H 0.078 0.922 44 H 0.126 0.874 45 H 0.043 0.957 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.568 -29.926 -1.085 30.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.322 5.322 3 C -0.394 4.394 4 H 0.098 0.902 5 C -0.251 4.251 6 N -0.586 5.586 7 Si 0.801 3.199 8 H -0.211 1.211 9 H -0.226 1.226 10 H -0.191 1.191 11 C 0.058 3.942 12 H 0.104 0.896 13 C -0.180 4.180 14 C -0.009 4.009 15 N -0.331 5.331 16 C 0.394 3.606 17 O -0.458 6.458 18 C -0.248 4.248 19 C -0.051 4.051 20 N -0.125 5.125 21 C 0.010 3.990 22 H 0.164 0.836 23 C -0.199 4.199 24 C -0.037 4.037 25 O -0.294 6.294 26 C -0.042 4.042 27 N -0.053 5.053 28 N -0.086 5.086 29 C -0.025 4.025 30 H 0.017 0.983 31 H 0.039 0.961 32 H 0.048 0.952 33 H 0.057 0.943 34 H 0.085 0.915 35 H 0.118 0.882 36 H 0.102 0.898 37 H 0.116 0.884 38 H 0.244 0.756 39 H 0.133 0.867 40 H 0.101 0.899 41 H 0.137 0.863 42 H 0.089 0.911 43 H 0.096 0.904 44 H 0.144 0.856 45 H 0.061 0.939 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.498 -30.250 -1.757 30.404 hybrid contribution -0.070 1.679 1.176 2.051 sum 2.428 -28.571 -0.581 28.680 Atomic orbital electron populations 1.20472 0.82873 0.95893 0.97329 1.44133 1.01972 1.01050 1.85052 1.19635 0.97542 0.85726 1.36457 0.90205 1.25814 0.98616 1.01936 0.98714 1.70277 1.20416 1.27260 1.40658 0.85202 0.78392 0.79424 0.76918 1.21125 1.22606 1.19135 1.21547 0.96375 0.84610 0.91660 0.89620 1.23296 1.02302 0.93316 0.99097 1.22604 1.01837 0.97923 0.78518 1.48345 1.65938 1.06506 1.12261 1.16791 0.76776 0.82450 0.84554 1.90781 1.52840 1.85505 1.16700 1.21142 1.17062 0.95033 0.91560 1.23515 0.96517 0.85949 0.99075 1.50668 1.45544 1.08845 1.07478 1.23432 0.98207 0.73998 1.03342 0.83633 1.23427 0.96105 1.02147 0.98233 1.23671 0.80545 1.03912 0.95595 1.89246 1.21647 1.43810 1.74717 1.23947 0.98477 0.90972 0.90831 1.81958 1.20177 1.00907 1.02280 1.74696 1.11739 1.06427 1.15737 1.22575 1.00364 0.80077 0.99501 0.98339 0.96115 0.95200 0.94322 0.91524 0.88250 0.89835 0.88359 0.75635 0.86660 0.89897 0.86342 0.91137 0.90359 0.85567 0.93884 0.92870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.07 7.74 127.77 0.99 10.05 16 2 N -0.60 -29.91 2.94 -696.16 -2.04 -31.95 16 3 C -0.26 -14.27 9.64 84.03 0.81 -13.46 16 4 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16 5 C -0.06 -3.13 5.06 84.86 0.43 -2.70 16 6 N -0.94 -56.39 10.67 21.65 0.23 -56.16 16 7 Si 0.97 45.09 29.58 68.60 2.03 47.12 16 8 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 9 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 10 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 11 C 0.17 6.65 3.44 46.18 0.16 6.80 16 12 H 0.09 3.29 7.92 -2.39 -0.02 3.27 16 13 C -0.14 -4.48 6.60 32.06 0.21 -4.27 16 14 C 0.11 3.24 6.14 86.93 0.53 3.78 16 15 N -0.60 -20.67 3.32 -815.11 -2.71 -23.38 16 16 C 0.61 20.65 7.85 86.69 0.68 21.33 16 17 O -0.58 -22.94 17.19 -4.03 -0.07 -23.01 16 18 C -0.11 -2.88 6.84 40.81 0.28 -2.60 16 19 C 0.11 1.97 10.27 83.85 0.86 2.83 16 20 N -0.34 -5.26 3.54 -321.75 -1.14 -6.39 16 21 C 0.11 0.90 4.28 46.01 0.20 1.10 16 22 H 0.15 0.80 8.14 -2.38 -0.02 0.78 16 23 C -0.16 -0.94 6.88 31.61 0.22 -0.72 16 24 C 0.04 0.23 7.63 72.48 0.55 0.79 16 25 O -0.38 -3.87 11.65 -148.98 -1.74 -5.60 16 26 C 0.04 0.26 7.18 72.48 0.52 0.78 16 27 N -0.07 -1.62 13.78 37.02 0.51 -1.11 16 28 N -0.21 -5.50 9.39 -50.00 -0.47 -5.97 16 29 C 0.10 4.04 6.50 86.73 0.56 4.61 16 30 H 0.00 -0.10 7.32 -2.38 -0.02 -0.11 16 31 H 0.02 1.11 7.22 -2.39 -0.02 1.09 16 32 H 0.03 1.31 6.13 -2.39 -0.01 1.30 16 33 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 34 H 0.07 2.28 6.14 -2.38 -0.01 2.27 16 35 H 0.10 2.77 8.14 -2.39 -0.02 2.75 16 36 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 37 H 0.10 2.69 6.12 -2.39 -0.01 2.68 16 38 H 0.23 2.92 6.88 -2.91 -0.02 2.90 16 39 H 0.11 0.33 8.14 -2.39 -0.02 0.32 16 40 H 0.08 0.68 7.96 -2.39 -0.02 0.66 16 41 H 0.12 0.35 8.14 -2.39 -0.02 0.33 16 42 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 43 H 0.08 0.56 5.97 -2.39 -0.01 0.54 16 44 H 0.13 0.61 8.14 -2.38 -0.02 0.59 16 45 H 0.04 2.01 7.06 -2.39 -0.02 2.00 16 46 H 0.05 2.20 8.14 -2.38 -0.02 2.18 16 Total: -1.00 -73.52 369.43 2.61 -70.91 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: 1.00 Total: 7.23 kcal Atomic # 6 Polarization: 21.31 SS G_CDS: 7.00 Total: 28.32 kcal Atomic # 7 Polarization: -119.35 SS G_CDS: -5.62 Total: -124.97 kcal Atomic # 8 Polarization: -26.80 SS G_CDS: -1.81 Total: -28.61 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -73.52 2.61 -70.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972692307.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.058 kcal (2) G-P(sol) polarization free energy of solvation -73.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds