Wall clock time and date at job start Tue Mar 31 2020 18:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36930 * 120.00020 * 2 1 4 4 H 1.08004 * 120.00026 * 201.87433 * 3 2 1 5 5 C 1.38814 * 120.00318 * 21.88151 * 3 2 1 6 6 N 1.31617 * 119.99806 * 11.13970 * 5 3 2 7 7 Si 1.86796 * 120.00329 * 191.14262 * 5 3 2 8 8 H 1.48508 * 109.46859 * 89.99731 * 7 5 3 9 9 H 1.48500 * 109.47351 * 209.99723 * 7 5 3 10 10 H 1.48499 * 109.47256 * 330.00018 * 7 5 3 11 11 C 1.46504 * 119.99591 * 180.02562 * 2 1 3 12 12 H 1.08999 * 110.63536 * 176.85555 * 11 2 1 13 13 C 1.55149 * 110.71906 * 299.99090 * 11 2 1 14 14 C 1.54912 * 101.57844 * 153.86580 * 13 11 2 15 15 N 1.47422 * 104.93201 * 322.94019 * 14 13 11 16 16 C 1.34779 * 125.64961 * 204.15289 * 15 14 13 17 17 O 1.21588 * 120.00024 * 180.02562 * 16 15 14 18 18 C 1.47525 * 119.99727 * 0.02709 * 16 15 14 19 19 C 1.36600 * 125.76879 * 179.71771 * 18 16 15 20 20 N 1.34807 * 106.83965 * 179.89329 * 19 18 16 21 21 C 1.46505 * 126.59474 * 180.12579 * 20 19 18 22 22 H 1.08997 * 110.45447 * 207.85327 * 21 20 19 23 23 C 1.54508 * 110.50730 * 85.25151 * 21 20 19 24 24 C 1.54478 * 104.06080 * 241.35498 * 23 21 20 25 25 O 1.44428 * 104.80360 * 23.97734 * 24 23 21 26 26 C 1.44425 * 105.27620 * 319.49076 * 25 24 23 27 27 N 1.40215 * 106.81114 * 0.35827 * 20 19 18 28 28 N 1.28753 * 108.36620 * 359.76821 * 27 20 19 29 29 C 1.47289 * 108.55878 * 24.15297 * 15 14 13 30 30 H 1.09008 * 109.46538 * 275.13550 * 1 2 3 31 31 H 1.08997 * 109.47300 * 35.12881 * 1 2 3 32 32 H 1.08995 * 109.47275 * 155.13294 * 1 2 3 33 33 H 0.96995 * 120.00024 * 180.02562 * 6 5 3 34 34 H 1.09001 * 111.00687 * 35.80077 * 13 11 2 35 35 H 1.08994 * 111.01057 * 271.94059 * 13 11 2 36 36 H 1.09003 * 110.36380 * 81.83347 * 14 13 11 37 37 H 1.09003 * 110.36562 * 204.04205 * 14 13 11 38 38 H 1.08005 * 126.57685 * 0.03677 * 19 18 16 39 39 H 1.09000 * 110.51222 * 359.97438 * 23 21 20 40 40 H 1.08998 * 110.51217 * 122.57424 * 23 21 20 41 41 H 1.09005 * 110.37849 * 142.80896 * 24 23 21 42 42 H 1.08997 * 110.37451 * 265.15081 * 24 23 21 43 43 H 1.09004 * 110.36634 * 281.68260 * 26 25 24 44 44 H 1.08995 * 110.37478 * 159.34059 * 26 25 24 45 45 H 1.09003 * 109.85522 * 239.50616 * 29 15 14 46 46 H 1.08999 * 110.00414 * 118.43154 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1714 1.2195 -0.3485 5 6 1.5307 2.3447 0.4480 6 7 0.3747 2.2738 1.0732 7 14 2.3383 4.0049 0.1636 8 1 1.8831 4.5606 -1.1362 9 1 1.9599 4.9336 1.2588 10 1 3.8140 3.8403 0.1419 11 6 2.1975 -1.2688 -0.0006 12 1 3.2716 -1.0923 -0.0564 13 6 1.8437 -2.1074 1.2559 14 6 2.1171 -3.5478 0.7555 15 7 1.6771 -3.5510 -0.6515 16 6 1.2935 -4.6367 -1.3520 17 8 0.9490 -4.5210 -2.5123 18 6 1.2915 -5.9653 -0.7109 19 6 0.9219 -7.1383 -1.3055 20 7 1.0678 -8.1080 -0.3806 21 6 0.7937 -9.5358 -0.5613 22 1 0.5195 -9.9943 0.3888 23 6 2.0203 -10.2492 -1.1727 24 6 1.5000 -10.8045 -2.5171 25 8 0.3758 -9.9625 -2.8538 26 6 -0.3225 -9.7443 -1.6085 27 7 1.5272 -7.4866 0.7894 28 7 1.6476 -6.2257 0.5586 29 6 1.7273 -2.1702 -1.1616 30 1 -0.3633 0.0920 1.0236 31 1 -0.3634 0.8405 -0.5913 32 1 -0.3633 -0.9323 -0.4321 33 1 -0.0581 3.0836 1.3859 34 1 0.7957 -1.9807 1.5279 35 1 2.4959 -1.8537 2.0915 36 1 3.1809 -3.7764 0.8208 37 1 1.5389 -4.2670 1.3356 38 1 0.5806 -7.2647 -2.3224 39 1 2.8304 -9.5396 -1.3409 40 1 2.3524 -11.0605 -0.5250 41 1 2.2722 -10.7303 -3.2828 42 1 1.1776 -11.8392 -2.4010 43 1 -0.9243 -10.6166 -1.3531 44 1 -0.9502 -8.8558 -1.6761 45 1 0.7356 -1.8615 -1.4924 46 1 2.4317 -2.1044 -1.9908 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972692311.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:06 Heat of formation + Delta-G solvation = 67.281318 kcal Electronic energy + Delta-G solvation = -29028.863236 eV Core-core repulsion = 24957.619790 eV Total energy + Delta-G solvation = -4071.243446 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.50132 -40.08638 -39.36302 -37.29791 -35.01139 -34.64446 -31.82518 -31.67569 -30.81828 -29.67775 -29.44789 -27.77035 -26.01136 -24.83855 -24.05652 -23.22527 -22.59245 -21.97599 -21.23613 -19.82842 -19.07839 -17.92837 -17.11601 -16.98502 -16.64136 -16.28712 -16.18729 -15.82404 -15.30738 -15.14825 -14.80719 -14.58982 -13.88022 -13.62361 -13.34978 -13.26860 -13.18417 -12.82363 -12.57611 -12.51238 -12.33958 -12.27368 -12.01161 -11.92701 -11.73159 -11.41784 -11.06433 -10.89298 -10.84720 -10.70304 -10.48772 -10.39578 -10.36300 -10.13708 -9.90118 -9.80320 -9.75663 -9.43385 -8.53498 -8.22800 -6.77279 -5.70689 -3.17373 0.92689 1.64835 1.68075 3.04584 3.21462 3.40727 3.41245 3.47037 3.48094 3.62827 3.75771 4.04474 4.12303 4.27619 4.38458 4.48061 4.51734 4.73539 4.80294 4.85608 4.95741 5.03244 5.15211 5.20192 5.22919 5.34765 5.43594 5.59092 5.69691 5.79324 5.92046 5.95004 6.05277 6.12287 6.22890 6.41156 6.54177 6.68128 6.71910 6.88841 6.97883 7.43743 7.72519 7.77046 7.83845 7.85292 8.34418 8.40832 9.24408 9.86658 10.35235 11.34032 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.035061 B = 0.002170 C = 0.002132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.418279 B =12899.654256 C =13131.600401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.160 3.840 2 N -0.588 5.588 3 C -0.256 4.256 4 H 0.071 0.929 5 C 0.002 3.998 6 N -0.907 5.907 7 Si 0.908 3.092 8 H -0.288 1.288 9 H -0.291 1.291 10 H -0.279 1.279 11 C 0.173 3.827 12 H 0.079 0.921 13 C -0.152 4.152 14 C 0.101 3.899 15 N -0.595 5.595 16 C 0.610 3.390 17 O -0.546 6.546 18 C -0.088 4.088 19 C 0.096 3.904 20 N -0.360 5.360 21 C 0.117 3.883 22 H 0.130 0.870 23 C -0.166 4.166 24 C 0.044 3.956 25 O -0.364 6.364 26 C 0.034 3.966 27 N -0.070 5.070 28 N -0.196 5.196 29 C 0.088 3.912 30 H 0.032 0.968 31 H 0.045 0.955 32 H 0.001 0.999 33 H 0.252 0.748 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.064 0.936 37 H 0.087 0.913 38 H 0.204 0.796 39 H 0.089 0.911 40 H 0.100 0.900 41 H 0.101 0.899 42 H 0.070 0.930 43 H 0.092 0.908 44 H 0.107 0.893 45 H 0.076 0.924 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.808 -29.365 -3.057 29.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.309 5.309 3 C -0.386 4.386 4 H 0.089 0.911 5 C -0.196 4.196 6 N -0.552 5.552 7 Si 0.738 3.262 8 H -0.215 1.215 9 H -0.218 1.218 10 H -0.205 1.205 11 C 0.062 3.938 12 H 0.097 0.903 13 C -0.192 4.192 14 C -0.022 4.022 15 N -0.326 5.326 16 C 0.395 3.605 17 O -0.424 6.424 18 C -0.227 4.227 19 C -0.060 4.060 20 N -0.145 5.145 21 C 0.014 3.986 22 H 0.148 0.852 23 C -0.205 4.205 24 C -0.033 4.033 25 O -0.283 6.283 26 C -0.044 4.044 27 N -0.049 5.049 28 N -0.070 5.070 29 C -0.036 4.036 30 H 0.050 0.950 31 H 0.063 0.937 32 H 0.019 0.981 33 H 0.063 0.937 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.083 0.917 37 H 0.105 0.895 38 H 0.221 0.779 39 H 0.108 0.892 40 H 0.118 0.882 41 H 0.120 0.880 42 H 0.089 0.911 43 H 0.110 0.890 44 H 0.125 0.875 45 H 0.094 0.906 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.852 -29.320 -2.400 29.430 hybrid contribution 0.123 0.784 -0.744 1.088 sum 0.974 -28.536 -3.144 28.725 Atomic orbital electron populations 1.20822 0.82370 0.95603 0.99589 1.43886 1.01947 0.99890 1.85132 1.19246 0.97721 0.85148 1.36472 0.91147 1.25020 0.97620 0.98532 0.98448 1.70079 1.17389 1.27010 1.40743 0.86206 0.78785 0.83916 0.77314 1.21497 1.21783 1.20477 1.21307 0.96240 0.85867 0.90372 0.90285 1.23409 1.02804 0.92841 1.00167 1.22551 0.99694 0.99049 0.80938 1.48303 1.63301 1.07253 1.13778 1.16356 0.78024 0.81248 0.84832 1.90799 1.50138 1.85385 1.16096 1.21503 1.13438 0.95826 0.91967 1.23329 0.98029 0.87199 0.97420 1.50521 1.45880 1.08049 1.10076 1.23016 0.96961 0.75919 1.02674 0.85206 1.23471 0.97680 1.01580 0.97768 1.23541 0.89144 0.94552 0.96083 1.89258 1.40850 1.69954 1.28195 1.23898 0.93694 1.03844 0.83005 1.82012 1.19006 1.00061 1.03812 1.74750 1.11520 1.06818 1.13924 1.22841 1.02628 0.79293 0.98836 0.95012 0.93662 0.98053 0.93732 0.90755 0.90390 0.91732 0.89467 0.77887 0.89245 0.88158 0.88040 0.91137 0.88995 0.87463 0.90561 0.91847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.00 7.73 59.85 0.46 4.46 16 2 N -0.59 -14.65 2.94 -171.39 -0.50 -15.15 16 3 C -0.26 -6.98 9.64 -15.06 -0.15 -7.12 16 4 H 0.07 1.86 7.82 -52.48 -0.41 1.45 16 5 C 0.00 0.06 5.14 -17.43 -0.09 -0.03 16 6 N -0.91 -26.38 10.54 55.49 0.58 -25.80 16 7 Si 0.91 21.87 29.57 -169.99 -5.03 16.85 16 8 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 9 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 C 0.17 3.53 3.45 -66.10 -0.23 3.30 16 12 H 0.08 1.58 7.92 -51.93 -0.41 1.17 16 13 C -0.15 -2.75 6.66 -24.58 -0.16 -2.92 16 14 C 0.10 1.61 6.12 -2.53 -0.02 1.59 16 15 N -0.59 -10.49 3.34 -171.53 -0.57 -11.06 16 16 C 0.61 10.64 7.85 -12.47 -0.10 10.55 16 17 O -0.55 -10.78 17.20 5.29 0.09 -10.68 16 18 C -0.09 -1.28 6.84 -83.55 -0.57 -1.86 16 19 C 0.10 1.08 10.04 -16.84 -0.17 0.91 16 20 N -0.36 -3.41 3.53 -53.04 -0.19 -3.60 16 21 C 0.12 0.61 4.28 -66.36 -0.28 0.33 16 22 H 0.13 0.45 8.14 -51.93 -0.42 0.02 16 23 C -0.17 -0.68 6.88 -25.16 -0.17 -0.85 16 24 C 0.04 0.17 7.63 37.93 0.29 0.46 16 25 O -0.36 -2.39 11.65 -35.23 -0.41 -2.80 16 26 C 0.03 0.15 6.65 37.93 0.25 0.41 16 27 N -0.07 -0.88 13.78 60.35 0.83 -0.04 16 28 N -0.20 -2.84 9.39 32.85 0.31 -2.53 16 29 C 0.09 1.69 6.42 -2.92 -0.02 1.67 16 30 H 0.03 0.85 7.38 -51.92 -0.38 0.47 16 31 H 0.04 1.22 7.21 -51.93 -0.37 0.84 16 32 H 0.00 0.02 6.16 -51.93 -0.32 -0.30 16 33 H 0.25 7.13 8.31 -40.82 -0.34 6.80 16 34 H 0.07 1.46 7.34 -51.93 -0.38 1.08 16 35 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 36 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.09 1.36 6.13 -51.93 -0.32 1.05 16 38 H 0.20 1.94 7.77 -52.48 -0.41 1.54 16 39 H 0.09 0.54 7.96 -51.93 -0.41 0.12 16 40 H 0.10 0.21 8.14 -51.93 -0.42 -0.21 16 41 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.07 0.14 8.14 -51.93 -0.42 -0.28 16 43 H 0.09 0.20 8.14 -51.93 -0.42 -0.23 16 44 H 0.11 0.55 7.30 -51.93 -0.38 0.17 16 45 H 0.08 1.61 6.00 -51.93 -0.31 1.29 16 46 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 371.02 15.07 5.59 5.59 Total: -1.00 -33.71 371.02 -6.87 -40.58 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: -6.63 Total: -2.24 kcal Atomic # 6 Polarization: 11.85 SS G_CDS: -0.95 Total: 10.90 kcal Atomic # 7 Polarization: -58.65 SS G_CDS: 0.46 Total: -58.19 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: -0.32 Total: -13.49 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.03 Total: 16.85 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.71 -6.87 -40.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972692311.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.865 kcal (2) G-P(sol) polarization free energy of solvation -33.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds