Wall clock time and date at job start Tue Mar 31 2020 18:26:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36930 * 120.00020 * 2 1 4 4 H 1.08004 * 120.00026 * 201.87433 * 3 2 1 5 5 C 1.38814 * 120.00318 * 21.88151 * 3 2 1 6 6 N 1.31617 * 119.99806 * 11.13970 * 5 3 2 7 7 Si 1.86796 * 120.00329 * 191.14262 * 5 3 2 8 8 H 1.48508 * 109.46859 * 89.99731 * 7 5 3 9 9 H 1.48500 * 109.47351 * 209.99723 * 7 5 3 10 10 H 1.48499 * 109.47256 * 330.00018 * 7 5 3 11 11 C 1.46504 * 119.99591 * 180.02562 * 2 1 3 12 12 H 1.08999 * 110.63536 * 176.85555 * 11 2 1 13 13 C 1.55149 * 110.71906 * 299.99090 * 11 2 1 14 14 C 1.54912 * 101.57844 * 153.86580 * 13 11 2 15 15 N 1.47422 * 104.93201 * 322.94019 * 14 13 11 16 16 C 1.34779 * 125.64961 * 204.15289 * 15 14 13 17 17 O 1.21588 * 120.00024 * 180.02562 * 16 15 14 18 18 C 1.47525 * 119.99727 * 0.02709 * 16 15 14 19 19 C 1.36600 * 125.76879 * 179.71771 * 18 16 15 20 20 N 1.34807 * 106.83965 * 179.89329 * 19 18 16 21 21 C 1.46505 * 126.59474 * 180.12579 * 20 19 18 22 22 H 1.08997 * 110.45447 * 207.85327 * 21 20 19 23 23 C 1.54508 * 110.50730 * 85.25151 * 21 20 19 24 24 C 1.54478 * 104.06080 * 241.35498 * 23 21 20 25 25 O 1.44428 * 104.80360 * 23.97734 * 24 23 21 26 26 C 1.44425 * 105.27620 * 319.49076 * 25 24 23 27 27 N 1.40215 * 106.81114 * 0.35827 * 20 19 18 28 28 N 1.28753 * 108.36620 * 359.76821 * 27 20 19 29 29 C 1.47289 * 108.55878 * 24.15297 * 15 14 13 30 30 H 1.09008 * 109.46538 * 275.13550 * 1 2 3 31 31 H 1.08997 * 109.47300 * 35.12881 * 1 2 3 32 32 H 1.08995 * 109.47275 * 155.13294 * 1 2 3 33 33 H 0.96995 * 120.00024 * 180.02562 * 6 5 3 34 34 H 1.09001 * 111.00687 * 35.80077 * 13 11 2 35 35 H 1.08994 * 111.01057 * 271.94059 * 13 11 2 36 36 H 1.09003 * 110.36380 * 81.83347 * 14 13 11 37 37 H 1.09003 * 110.36562 * 204.04205 * 14 13 11 38 38 H 1.08005 * 126.57685 * 0.03677 * 19 18 16 39 39 H 1.09000 * 110.51222 * 359.97438 * 23 21 20 40 40 H 1.08998 * 110.51217 * 122.57424 * 23 21 20 41 41 H 1.09005 * 110.37849 * 142.80896 * 24 23 21 42 42 H 1.08997 * 110.37451 * 265.15081 * 24 23 21 43 43 H 1.09004 * 110.36634 * 281.68260 * 26 25 24 44 44 H 1.08995 * 110.37478 * 159.34059 * 26 25 24 45 45 H 1.09003 * 109.85522 * 239.50616 * 29 15 14 46 46 H 1.08999 * 110.00414 * 118.43154 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1714 1.2195 -0.3485 5 6 1.5307 2.3447 0.4480 6 7 0.3747 2.2738 1.0732 7 14 2.3383 4.0049 0.1636 8 1 1.8831 4.5606 -1.1362 9 1 1.9599 4.9336 1.2588 10 1 3.8140 3.8403 0.1419 11 6 2.1975 -1.2688 -0.0006 12 1 3.2716 -1.0923 -0.0564 13 6 1.8437 -2.1074 1.2559 14 6 2.1171 -3.5478 0.7555 15 7 1.6771 -3.5510 -0.6515 16 6 1.2935 -4.6367 -1.3520 17 8 0.9490 -4.5210 -2.5123 18 6 1.2915 -5.9653 -0.7109 19 6 0.9219 -7.1383 -1.3055 20 7 1.0678 -8.1080 -0.3806 21 6 0.7937 -9.5358 -0.5613 22 1 0.5195 -9.9943 0.3888 23 6 2.0203 -10.2492 -1.1727 24 6 1.5000 -10.8045 -2.5171 25 8 0.3758 -9.9625 -2.8538 26 6 -0.3225 -9.7443 -1.6085 27 7 1.5272 -7.4866 0.7894 28 7 1.6476 -6.2257 0.5586 29 6 1.7273 -2.1702 -1.1616 30 1 -0.3633 0.0920 1.0236 31 1 -0.3634 0.8405 -0.5913 32 1 -0.3633 -0.9323 -0.4321 33 1 -0.0581 3.0836 1.3859 34 1 0.7957 -1.9807 1.5279 35 1 2.4959 -1.8537 2.0915 36 1 3.1809 -3.7764 0.8208 37 1 1.5389 -4.2670 1.3356 38 1 0.5806 -7.2647 -2.3224 39 1 2.8304 -9.5396 -1.3409 40 1 2.3524 -11.0605 -0.5250 41 1 2.2722 -10.7303 -3.2828 42 1 1.1776 -11.8392 -2.4010 43 1 -0.9243 -10.6166 -1.3531 44 1 -0.9502 -8.8558 -1.6761 45 1 0.7356 -1.8615 -1.4924 46 1 2.4317 -2.1044 -1.9908 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972692311.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:05 Heat of formation + Delta-G solvation = 43.697008 kcal Electronic energy + Delta-G solvation = -29029.885929 eV Core-core repulsion = 24957.619790 eV Total energy + Delta-G solvation = -4072.266138 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.42167 -40.96510 -40.34609 -38.86872 -36.57437 -35.60268 -33.48655 -32.43123 -31.93558 -31.17981 -29.97409 -29.27772 -28.07639 -26.05990 -24.97575 -24.31001 -23.58908 -23.28319 -21.92082 -21.07319 -20.64904 -18.94404 -18.86922 -17.80074 -17.53780 -17.37680 -17.05097 -16.80051 -16.58211 -16.25011 -15.88457 -15.70196 -15.44991 -15.05076 -14.84322 -14.43090 -14.20550 -13.95627 -13.88922 -13.77264 -13.37007 -13.23464 -13.06506 -12.87184 -12.80738 -12.64873 -12.53107 -12.37109 -12.27057 -12.22809 -12.10755 -11.99615 -11.77879 -11.52723 -11.41000 -11.28723 -10.83271 -10.62858 -10.44921 -9.66531 -8.81562 -7.81348 -5.30171 0.02867 0.54698 0.91843 1.49275 1.50935 1.59296 1.85563 2.14051 2.52650 2.73556 3.03545 3.23659 3.31085 3.33623 3.52018 3.56994 3.76471 3.84033 3.87581 3.92135 4.02632 4.12506 4.28782 4.29767 4.32494 4.40244 4.46147 4.53868 4.59940 4.70557 4.76013 4.81034 4.86750 4.89414 4.97797 5.03735 5.17375 5.26211 5.34107 5.35490 5.40198 5.65363 5.66585 5.71997 6.32104 6.42092 6.75104 7.02032 7.14894 7.84551 8.29693 9.22427 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.035061 B = 0.002170 C = 0.002132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.418279 B =12899.654256 C =13131.600401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.181 3.819 2 N -0.603 5.603 3 C -0.263 4.263 4 H 0.077 0.923 5 C -0.054 4.054 6 N -0.939 5.939 7 Si 0.972 3.028 8 H -0.289 1.289 9 H -0.296 1.296 10 H -0.266 1.266 11 C 0.168 3.832 12 H 0.086 0.914 13 C -0.142 4.142 14 C 0.115 3.885 15 N -0.600 5.600 16 C 0.610 3.390 17 O -0.576 6.576 18 C -0.114 4.114 19 C 0.114 3.886 20 N -0.341 5.341 21 C 0.106 3.894 22 H 0.155 0.845 23 C -0.160 4.160 24 C 0.042 3.958 25 O -0.392 6.392 26 C 0.035 3.965 27 N -0.076 5.076 28 N -0.215 5.215 29 C 0.100 3.900 30 H 0.008 0.992 31 H 0.017 0.983 32 H 0.020 0.980 33 H 0.248 0.752 34 H 0.055 0.945 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.095 0.905 38 H 0.219 0.781 39 H 0.068 0.932 40 H 0.126 0.874 41 H 0.100 0.900 42 H 0.094 0.906 43 H 0.123 0.877 44 H 0.098 0.902 45 H 0.055 0.945 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.725 -32.156 -2.974 32.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.324 5.324 3 C -0.393 4.393 4 H 0.095 0.905 5 C -0.249 4.249 6 N -0.586 5.586 7 Si 0.801 3.199 8 H -0.216 1.216 9 H -0.223 1.223 10 H -0.190 1.190 11 C 0.059 3.941 12 H 0.104 0.896 13 C -0.182 4.182 14 C -0.007 4.007 15 N -0.331 5.331 16 C 0.397 3.603 17 O -0.456 6.456 18 C -0.253 4.253 19 C -0.044 4.044 20 N -0.126 5.126 21 C 0.005 3.995 22 H 0.173 0.827 23 C -0.198 4.198 24 C -0.034 4.034 25 O -0.311 6.311 26 C -0.043 4.043 27 N -0.056 5.056 28 N -0.088 5.088 29 C -0.025 4.025 30 H 0.027 0.973 31 H 0.036 0.964 32 H 0.039 0.961 33 H 0.057 0.943 34 H 0.074 0.926 35 H 0.106 0.894 36 H 0.101 0.899 37 H 0.113 0.887 38 H 0.235 0.765 39 H 0.087 0.913 40 H 0.144 0.856 41 H 0.119 0.881 42 H 0.113 0.887 43 H 0.141 0.859 44 H 0.117 0.883 45 H 0.073 0.927 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.800 -32.181 -2.302 32.314 hybrid contribution -0.169 1.448 -0.821 1.673 sum 1.632 -30.734 -3.123 30.935 Atomic orbital electron populations 1.20471 0.82923 0.95293 0.97688 1.44049 1.01922 1.01026 1.85439 1.19609 0.98022 0.86158 1.35503 0.90479 1.25801 0.98380 1.01881 0.98802 1.70245 1.18812 1.27386 1.42119 0.85186 0.78521 0.79611 0.76617 1.21593 1.22261 1.19030 1.21462 0.96157 0.84606 0.91866 0.89557 1.23252 1.01829 0.93826 0.99310 1.22502 1.00825 0.97452 0.79919 1.48340 1.63722 1.06660 1.14370 1.16711 0.76978 0.82063 0.84513 1.90772 1.51371 1.86029 1.17391 1.21184 1.16178 0.95219 0.92720 1.23457 0.96424 0.86579 0.97918 1.50826 1.43795 1.09368 1.08621 1.23585 0.98073 0.73401 1.04419 0.82718 1.23473 0.96339 1.01654 0.98383 1.23698 0.88568 0.95370 0.95792 1.89234 1.41816 1.70724 1.29357 1.24033 0.93315 1.04866 0.82068 1.81913 1.19205 0.99537 1.04939 1.74693 1.12351 1.07823 1.13953 1.22508 1.01320 0.80322 0.98323 0.97343 0.96428 0.96119 0.94305 0.92576 0.89421 0.89940 0.88696 0.76469 0.91304 0.85579 0.88132 0.88745 0.85909 0.88341 0.92686 0.91637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.32 7.73 127.77 0.99 10.30 16 2 N -0.60 -30.45 2.94 -696.15 -2.05 -32.49 16 3 C -0.26 -14.38 9.64 84.03 0.81 -13.57 16 4 H 0.08 4.03 7.82 -2.91 -0.02 4.01 16 5 C -0.05 -3.02 5.14 84.86 0.44 -2.58 16 6 N -0.94 -55.95 10.54 21.65 0.23 -55.72 16 7 Si 0.97 45.33 29.57 68.60 2.03 47.35 16 8 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 9 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 10 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 11 C 0.17 6.83 3.45 46.18 0.16 6.99 16 12 H 0.09 3.38 7.92 -2.39 -0.02 3.37 16 13 C -0.14 -5.08 6.66 31.98 0.21 -4.87 16 14 C 0.12 3.56 6.12 86.86 0.53 4.09 16 15 N -0.60 -20.92 3.34 -814.86 -2.72 -23.64 16 16 C 0.61 21.15 7.85 86.69 0.68 21.83 16 17 O -0.58 -22.82 17.20 -3.99 -0.07 -22.89 16 18 C -0.11 -3.21 6.84 40.82 0.28 -2.94 16 19 C 0.11 2.40 10.04 83.85 0.84 3.24 16 20 N -0.34 -5.76 3.53 -321.73 -1.14 -6.90 16 21 C 0.11 0.79 4.28 46.00 0.20 0.98 16 22 H 0.16 0.45 8.14 -2.39 -0.02 0.43 16 23 C -0.16 -0.84 6.88 31.61 0.22 -0.62 16 24 C 0.04 0.21 7.63 72.48 0.55 0.76 16 25 O -0.39 -4.27 11.65 -148.98 -1.74 -6.01 16 26 C 0.03 0.22 6.65 72.48 0.48 0.70 16 27 N -0.08 -1.78 13.78 37.02 0.51 -1.27 16 28 N -0.21 -5.94 9.39 -49.99 -0.47 -6.41 16 29 C 0.10 3.86 6.42 86.68 0.56 4.41 16 30 H 0.01 0.46 7.38 -2.38 -0.02 0.45 16 31 H 0.02 0.96 7.21 -2.39 -0.02 0.94 16 32 H 0.02 0.96 6.16 -2.39 -0.01 0.94 16 33 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 34 H 0.06 2.22 7.34 -2.39 -0.02 2.21 16 35 H 0.09 2.96 8.14 -2.39 -0.02 2.95 16 36 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 37 H 0.09 2.86 6.13 -2.39 -0.01 2.84 16 38 H 0.22 3.89 7.77 -2.91 -0.02 3.86 16 39 H 0.07 0.69 7.96 -2.39 -0.02 0.67 16 40 H 0.13 0.03 8.14 -2.39 -0.02 0.01 16 41 H 0.10 0.50 8.14 -2.38 -0.02 0.48 16 42 H 0.09 0.04 8.14 -2.39 -0.02 0.02 16 43 H 0.12 0.04 8.14 -2.38 -0.02 0.02 16 44 H 0.10 0.80 7.30 -2.39 -0.02 0.78 16 45 H 0.05 2.36 6.00 -2.39 -0.01 2.35 16 46 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 Total: -1.00 -73.99 371.02 2.54 -71.45 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: 1.00 Total: 7.79 kcal Atomic # 6 Polarization: 21.79 SS G_CDS: 6.95 Total: 28.74 kcal Atomic # 7 Polarization: -120.81 SS G_CDS: -5.63 Total: -126.44 kcal Atomic # 8 Polarization: -27.10 SS G_CDS: -1.80 Total: -28.90 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.35 kcal Total: -73.99 2.54 -71.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972692311.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.151 kcal (2) G-P(sol) polarization free energy of solvation -73.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds