Wall clock time and date at job start Tue Mar 31 2020 18:26:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36938 * 119.99979 * 2 1 4 4 H 1.07998 * 120.00146 * 203.81426 * 3 2 1 5 5 C 1.38812 * 119.99793 * 23.81010 * 3 2 1 6 6 N 1.31621 * 120.00124 * 10.97162 * 5 3 2 7 7 Si 1.86803 * 119.99958 * 190.96916 * 5 3 2 8 8 H 1.48492 * 109.46997 * 60.00604 * 7 5 3 9 9 H 1.48508 * 109.46870 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47185 * 300.00358 * 7 5 3 11 11 C 1.46498 * 120.00231 * 180.02562 * 2 1 3 12 12 H 1.09008 * 110.88473 * 182.42544 * 11 2 1 13 13 C 1.55154 * 111.00305 * 306.34292 * 11 2 1 14 14 C 1.54335 * 103.02153 * 153.37958 * 13 11 2 15 15 N 1.47018 * 107.26604 * 338.14722 * 14 13 11 16 16 C 1.34780 * 125.64932 * 178.84765 * 15 14 13 17 17 O 1.21599 * 119.99988 * 179.68990 * 16 15 14 18 18 C 1.47519 * 120.00082 * 359.68887 * 16 15 14 19 19 C 1.36591 * 125.77635 * 180.24749 * 18 16 15 20 20 N 1.34808 * 106.84631 * 180.16883 * 19 18 16 21 21 C 1.46497 * 126.59786 * 179.90875 * 20 19 18 22 22 H 1.08998 * 110.45783 * 152.11246 * 21 20 19 23 23 C 1.54513 * 110.51056 * 274.71355 * 21 20 19 24 24 C 1.54476 * 104.18295 * 118.57757 * 23 21 20 25 25 O 1.44646 * 104.69606 * 336.18552 * 24 23 21 26 26 C 1.44430 * 105.36772 * 40.35203 * 25 24 23 27 27 N 1.40217 * 106.80563 * 359.64982 * 20 19 18 28 28 N 1.28752 * 108.36961 * 0.21998 * 27 20 19 29 29 C 1.47432 * 108.70258 * 358.57899 * 15 14 13 30 30 H 1.09006 * 109.46530 * 274.83432 * 1 2 3 31 31 H 1.08995 * 109.47330 * 34.83372 * 1 2 3 32 32 H 1.08997 * 109.46920 * 154.84091 * 1 2 3 33 33 H 0.97003 * 119.99825 * 179.97438 * 6 5 3 34 34 H 1.09001 * 110.72446 * 271.94312 * 13 11 2 35 35 H 1.09001 * 110.71814 * 35.03901 * 13 11 2 36 36 H 1.08997 * 109.99240 * 218.66839 * 14 13 11 37 37 H 1.08999 * 109.77571 * 97.50014 * 14 13 11 38 38 H 1.08008 * 126.57580 * 0.07124 * 19 18 16 39 39 H 1.09001 * 110.51263 * 237.28810 * 23 21 20 40 40 H 1.08999 * 110.51128 * 359.86508 * 23 21 20 41 41 H 1.09004 * 110.37449 * 94.91988 * 24 23 21 42 42 H 1.08999 * 110.37322 * 217.26018 * 24 23 21 43 43 H 1.09000 * 110.37181 * 200.73453 * 26 25 24 44 44 H 1.08999 * 110.46857 * 78.44190 * 26 25 24 45 45 H 1.09001 * 110.36411 * 143.19516 * 29 15 14 46 46 H 1.08996 * 110.36885 * 265.52040 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1607 1.2258 -0.3776 5 6 1.5442 2.3369 0.4853 6 7 0.4051 2.2554 1.1398 7 14 2.3461 4.0014 0.2097 8 1 2.4770 4.2524 -1.2480 9 1 1.5066 5.0626 0.8217 10 1 3.6921 4.0124 0.8368 11 6 2.1976 -1.2687 -0.0006 12 1 3.2731 -1.0964 0.0426 13 6 1.7323 -2.1800 1.1657 14 6 2.0328 -3.5993 0.6392 15 7 2.0993 -3.5158 -0.8271 16 6 2.3643 -4.5409 -1.6611 17 8 2.3883 -4.3564 -2.8627 18 6 2.6252 -5.8866 -1.1161 19 6 2.9095 -7.0036 -1.8490 20 7 3.0748 -8.0144 -0.9724 21 6 3.3923 -9.4076 -1.2955 22 1 3.9338 -9.8755 -0.4734 23 6 2.1026 -10.1971 -1.6131 24 6 2.2923 -10.6599 -3.0746 25 8 3.2333 -9.7173 -3.6388 26 6 4.2123 -9.4869 -2.6023 27 7 2.8905 -7.4745 0.3084 28 7 2.6275 -6.2201 0.1860 29 6 1.8216 -2.1263 -1.2345 30 1 -0.3632 0.0866 1.0241 31 1 -0.3634 0.8435 -0.5870 32 1 -0.3633 -0.9302 -0.4369 33 1 -0.0178 3.0597 1.4792 34 1 2.3048 -1.9722 2.0697 35 1 0.6651 -2.0560 1.3499 36 1 1.2375 -4.2830 0.9359 37 1 2.9881 -3.9447 1.0345 38 1 2.9856 -7.0656 -2.9246 39 1 2.0078 -11.0567 -0.9496 40 1 1.2286 -9.5514 -1.5273 41 1 2.7037 -11.6689 -3.1028 42 1 1.3443 -10.6206 -3.6112 43 1 4.7374 -8.5480 -2.7783 44 1 4.9206 -10.3141 -2.5563 45 1 2.4388 -1.8514 -2.0899 46 1 0.7651 -2.0049 -1.4733 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972692312.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:09 Heat of formation + Delta-G solvation = 63.616642 kcal Electronic energy + Delta-G solvation = -28959.963561 eV Core-core repulsion = 24888.561203 eV Total energy + Delta-G solvation = -4071.402358 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.49793 -40.06861 -39.37595 -37.29741 -35.00218 -34.66152 -31.82633 -31.68806 -30.82801 -29.68482 -29.43855 -27.80329 -26.00874 -24.84989 -24.04636 -23.22350 -22.61437 -21.95658 -21.23564 -19.73433 -19.21240 -17.91002 -17.12648 -16.98192 -16.64717 -16.27851 -16.16371 -15.71517 -15.53368 -14.99157 -14.87738 -14.45466 -13.99798 -13.60496 -13.31029 -13.25652 -13.19151 -12.83394 -12.57421 -12.43936 -12.40990 -12.27500 -12.05545 -11.92981 -11.82088 -11.52616 -11.06029 -10.86272 -10.84688 -10.69524 -10.43521 -10.40324 -10.39252 -10.19444 -9.94018 -9.82838 -9.73814 -9.43626 -8.54929 -8.24818 -6.74752 -5.71773 -3.20044 0.92329 1.64731 1.68253 3.03622 3.21118 3.39895 3.41194 3.46152 3.47704 3.62705 3.75264 4.04336 4.11673 4.27660 4.38001 4.47298 4.51677 4.73051 4.79817 4.85152 4.95433 5.03276 5.14721 5.18728 5.20718 5.34362 5.51865 5.55967 5.71748 5.75992 5.91183 5.92127 6.05907 6.12147 6.21899 6.39416 6.52064 6.64649 6.73030 6.84539 6.97340 7.40239 7.73108 7.75963 7.82305 7.83920 8.33361 8.40979 9.23731 9.85605 10.34800 11.32698 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.033310 B = 0.002157 C = 0.002114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.375638 B =12975.416004 C =13243.979979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.160 3.840 2 N -0.586 5.586 3 C -0.259 4.259 4 H 0.069 0.931 5 C 0.004 3.996 6 N -0.906 5.906 7 Si 0.907 3.093 8 H -0.284 1.284 9 H -0.291 1.291 10 H -0.283 1.283 11 C 0.173 3.827 12 H 0.079 0.921 13 C -0.152 4.152 14 C 0.112 3.888 15 N -0.596 5.596 16 C 0.610 3.390 17 O -0.547 6.547 18 C -0.090 4.090 19 C 0.096 3.904 20 N -0.360 5.360 21 C 0.117 3.883 22 H 0.130 0.870 23 C -0.167 4.167 24 C 0.044 3.956 25 O -0.365 6.365 26 C 0.034 3.966 27 N -0.070 5.070 28 N -0.195 5.195 29 C 0.086 3.914 30 H 0.033 0.967 31 H 0.043 0.957 32 H 0.001 0.999 33 H 0.253 0.747 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.066 0.934 37 H 0.069 0.931 38 H 0.204 0.796 39 H 0.100 0.900 40 H 0.089 0.911 41 H 0.071 0.929 42 H 0.102 0.898 43 H 0.107 0.893 44 H 0.092 0.908 45 H 0.074 0.926 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.082 -28.937 -4.750 29.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.306 5.306 3 C -0.388 4.388 4 H 0.087 0.913 5 C -0.194 4.194 6 N -0.551 5.551 7 Si 0.737 3.263 8 H -0.210 1.210 9 H -0.217 1.217 10 H -0.209 1.209 11 C 0.063 3.937 12 H 0.097 0.903 13 C -0.193 4.193 14 C -0.011 4.011 15 N -0.327 5.327 16 C 0.396 3.604 17 O -0.424 6.424 18 C -0.229 4.229 19 C -0.060 4.060 20 N -0.146 5.146 21 C 0.015 3.985 22 H 0.148 0.852 23 C -0.205 4.205 24 C -0.033 4.033 25 O -0.283 6.283 26 C -0.044 4.044 27 N -0.049 5.049 28 N -0.069 5.069 29 C -0.038 4.038 30 H 0.051 0.949 31 H 0.062 0.938 32 H 0.019 0.981 33 H 0.064 0.936 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.221 0.779 39 H 0.118 0.882 40 H 0.108 0.892 41 H 0.089 0.911 42 H 0.120 0.880 43 H 0.125 0.875 44 H 0.110 0.890 45 H 0.093 0.907 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 4.957 -28.924 -4.060 29.625 hybrid contribution 0.310 0.776 -0.746 1.120 sum 5.267 -28.147 -4.805 29.036 Atomic orbital electron populations 1.20820 0.82431 0.95601 0.99597 1.43803 1.01882 0.99838 1.85068 1.19181 0.98873 0.85495 1.35275 0.91311 1.25058 0.97738 0.98641 0.97992 1.70054 1.18576 1.27512 1.38945 0.86295 0.78513 0.83580 0.77884 1.21003 1.21655 1.20900 1.21414 0.96409 0.85804 0.90110 0.90327 1.23251 1.02769 0.92857 1.00383 1.22103 1.01695 0.98427 0.78872 1.48234 1.67272 1.09270 1.07955 1.16346 0.77532 0.81416 0.85099 1.90802 1.54199 1.83542 1.13889 1.21506 1.15480 0.96571 0.89310 1.23330 0.97179 0.86659 0.98800 1.50527 1.48544 1.08850 1.06647 1.23010 0.97752 0.77090 1.00695 0.85219 1.23469 0.97447 1.01270 0.98337 1.23580 0.94454 0.93151 0.92105 1.89284 1.38931 1.63738 1.36372 1.23888 0.91861 1.04162 0.84500 1.82013 1.21567 1.02581 0.98758 1.74780 1.09669 1.05302 1.17132 1.23074 1.01386 0.78774 1.00560 0.94855 0.93828 0.98068 0.93647 0.90508 0.90648 0.91581 0.91256 0.77896 0.88174 0.89234 0.91111 0.88007 0.87496 0.89014 0.90743 0.91122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.90 7.59 59.85 0.45 4.35 16 2 N -0.59 -14.52 2.96 -171.03 -0.51 -15.03 16 3 C -0.26 -7.05 9.61 -15.06 -0.14 -7.20 16 4 H 0.07 1.83 7.85 -52.49 -0.41 1.42 16 5 C 0.00 0.12 5.14 -17.43 -0.09 0.03 16 6 N -0.91 -26.20 10.65 55.49 0.59 -25.61 16 7 Si 0.91 21.84 29.57 -169.99 -5.03 16.81 16 8 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 9 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 C 0.17 3.57 3.54 -65.79 -0.23 3.33 16 12 H 0.08 1.63 7.96 -51.92 -0.41 1.22 16 13 C -0.15 -2.74 6.51 -24.89 -0.16 -2.90 16 14 C 0.11 1.80 5.52 -3.06 -0.02 1.78 16 15 N -0.60 -10.44 3.33 -171.74 -0.57 -11.01 16 16 C 0.61 10.56 7.85 -12.48 -0.10 10.46 16 17 O -0.55 -10.67 17.12 5.28 0.09 -10.58 16 18 C -0.09 -1.30 6.85 -83.55 -0.57 -1.87 16 19 C 0.10 1.07 10.04 -16.84 -0.17 0.90 16 20 N -0.36 -3.40 3.53 -53.04 -0.19 -3.59 16 21 C 0.12 0.61 4.28 -66.36 -0.28 0.32 16 22 H 0.13 0.44 8.14 -51.93 -0.42 0.02 16 23 C -0.17 -0.68 6.87 -25.16 -0.17 -0.86 16 24 C 0.04 0.17 7.65 37.93 0.29 0.46 16 25 O -0.36 -2.38 11.65 -35.23 -0.41 -2.79 16 26 C 0.03 0.15 6.65 37.93 0.25 0.40 16 27 N -0.07 -0.88 13.78 60.35 0.83 -0.04 16 28 N -0.19 -2.82 9.78 32.85 0.32 -2.50 16 29 C 0.09 1.66 6.46 -2.53 -0.02 1.64 16 30 H 0.03 0.87 7.35 -51.93 -0.38 0.49 16 31 H 0.04 1.15 7.32 -51.93 -0.38 0.77 16 32 H 0.00 0.02 6.34 -51.93 -0.33 -0.31 16 33 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 34 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 35 H 0.07 1.42 7.08 -51.93 -0.37 1.06 16 36 H 0.07 1.02 7.75 -51.93 -0.40 0.62 16 37 H 0.07 1.07 7.60 -51.93 -0.39 0.67 16 38 H 0.20 1.92 7.77 -52.48 -0.41 1.52 16 39 H 0.10 0.21 8.14 -51.93 -0.42 -0.21 16 40 H 0.09 0.54 7.96 -51.93 -0.41 0.13 16 41 H 0.07 0.14 8.14 -51.93 -0.42 -0.28 16 42 H 0.10 0.36 8.14 -51.93 -0.42 -0.07 16 43 H 0.11 0.53 7.30 -51.93 -0.38 0.15 16 44 H 0.09 0.19 8.14 -51.93 -0.42 -0.24 16 45 H 0.07 1.48 8.04 -51.93 -0.42 1.06 16 46 H 0.07 1.41 6.33 -51.93 -0.33 1.08 16 LS Contribution 372.05 15.07 5.61 5.61 Total: -1.00 -33.46 372.05 -6.92 -40.38 By element: Atomic # 1 Polarization: 4.18 SS G_CDS: -6.70 Total: -2.52 kcal Atomic # 6 Polarization: 11.83 SS G_CDS: -0.96 Total: 10.86 kcal Atomic # 7 Polarization: -58.26 SS G_CDS: 0.48 Total: -57.78 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: -0.32 Total: -13.37 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.03 Total: 16.81 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.46 -6.92 -40.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972692312.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.001 kcal (2) G-P(sol) polarization free energy of solvation -33.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds