Wall clock time and date at job start Tue Mar 31 2020 18:26:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36938 * 119.99979 * 2 1 4 4 H 1.07998 * 120.00146 * 203.81426 * 3 2 1 5 5 C 1.38812 * 119.99793 * 23.81010 * 3 2 1 6 6 N 1.31621 * 120.00124 * 10.97162 * 5 3 2 7 7 Si 1.86803 * 119.99958 * 190.96916 * 5 3 2 8 8 H 1.48492 * 109.46997 * 60.00604 * 7 5 3 9 9 H 1.48508 * 109.46870 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47185 * 300.00358 * 7 5 3 11 11 C 1.46498 * 120.00231 * 180.02562 * 2 1 3 12 12 H 1.09008 * 110.88473 * 182.42544 * 11 2 1 13 13 C 1.55154 * 111.00305 * 306.34292 * 11 2 1 14 14 C 1.54335 * 103.02153 * 153.37958 * 13 11 2 15 15 N 1.47018 * 107.26604 * 338.14722 * 14 13 11 16 16 C 1.34780 * 125.64932 * 178.84765 * 15 14 13 17 17 O 1.21599 * 119.99988 * 179.68990 * 16 15 14 18 18 C 1.47519 * 120.00082 * 359.68887 * 16 15 14 19 19 C 1.36591 * 125.77635 * 180.24749 * 18 16 15 20 20 N 1.34808 * 106.84631 * 180.16883 * 19 18 16 21 21 C 1.46497 * 126.59786 * 179.90875 * 20 19 18 22 22 H 1.08998 * 110.45783 * 152.11246 * 21 20 19 23 23 C 1.54513 * 110.51056 * 274.71355 * 21 20 19 24 24 C 1.54476 * 104.18295 * 118.57757 * 23 21 20 25 25 O 1.44646 * 104.69606 * 336.18552 * 24 23 21 26 26 C 1.44430 * 105.36772 * 40.35203 * 25 24 23 27 27 N 1.40217 * 106.80563 * 359.64982 * 20 19 18 28 28 N 1.28752 * 108.36961 * 0.21998 * 27 20 19 29 29 C 1.47432 * 108.70258 * 358.57899 * 15 14 13 30 30 H 1.09006 * 109.46530 * 274.83432 * 1 2 3 31 31 H 1.08995 * 109.47330 * 34.83372 * 1 2 3 32 32 H 1.08997 * 109.46920 * 154.84091 * 1 2 3 33 33 H 0.97003 * 119.99825 * 179.97438 * 6 5 3 34 34 H 1.09001 * 110.72446 * 271.94312 * 13 11 2 35 35 H 1.09001 * 110.71814 * 35.03901 * 13 11 2 36 36 H 1.08997 * 109.99240 * 218.66839 * 14 13 11 37 37 H 1.08999 * 109.77571 * 97.50014 * 14 13 11 38 38 H 1.08008 * 126.57580 * 0.07124 * 19 18 16 39 39 H 1.09001 * 110.51263 * 237.28810 * 23 21 20 40 40 H 1.08999 * 110.51128 * 359.86508 * 23 21 20 41 41 H 1.09004 * 110.37449 * 94.91988 * 24 23 21 42 42 H 1.08999 * 110.37322 * 217.26018 * 24 23 21 43 43 H 1.09000 * 110.37181 * 200.73453 * 26 25 24 44 44 H 1.08999 * 110.46857 * 78.44190 * 26 25 24 45 45 H 1.09001 * 110.36411 * 143.19516 * 29 15 14 46 46 H 1.08996 * 110.36885 * 265.52040 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1607 1.2258 -0.3776 5 6 1.5442 2.3369 0.4853 6 7 0.4051 2.2554 1.1398 7 14 2.3461 4.0014 0.2097 8 1 2.4770 4.2524 -1.2480 9 1 1.5066 5.0626 0.8217 10 1 3.6921 4.0124 0.8368 11 6 2.1976 -1.2687 -0.0006 12 1 3.2731 -1.0964 0.0426 13 6 1.7323 -2.1800 1.1657 14 6 2.0328 -3.5993 0.6392 15 7 2.0993 -3.5158 -0.8271 16 6 2.3643 -4.5409 -1.6611 17 8 2.3883 -4.3564 -2.8627 18 6 2.6252 -5.8866 -1.1161 19 6 2.9095 -7.0036 -1.8490 20 7 3.0748 -8.0144 -0.9724 21 6 3.3923 -9.4076 -1.2955 22 1 3.9338 -9.8755 -0.4734 23 6 2.1026 -10.1971 -1.6131 24 6 2.2923 -10.6599 -3.0746 25 8 3.2333 -9.7173 -3.6388 26 6 4.2123 -9.4869 -2.6023 27 7 2.8905 -7.4745 0.3084 28 7 2.6275 -6.2201 0.1860 29 6 1.8216 -2.1263 -1.2345 30 1 -0.3632 0.0866 1.0241 31 1 -0.3634 0.8435 -0.5870 32 1 -0.3633 -0.9302 -0.4369 33 1 -0.0178 3.0597 1.4792 34 1 2.3048 -1.9722 2.0697 35 1 0.6651 -2.0560 1.3499 36 1 1.2375 -4.2830 0.9359 37 1 2.9881 -3.9447 1.0345 38 1 2.9856 -7.0656 -2.9246 39 1 2.0078 -11.0567 -0.9496 40 1 1.2286 -9.5514 -1.5273 41 1 2.7037 -11.6689 -3.1028 42 1 1.3443 -10.6206 -3.6112 43 1 4.7374 -8.5480 -2.7783 44 1 4.9206 -10.3141 -2.5563 45 1 2.4388 -1.8514 -2.0899 46 1 0.7651 -2.0049 -1.4733 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972692312.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:08 Heat of formation + Delta-G solvation = 40.291291 kcal Electronic energy + Delta-G solvation = -28960.975024 eV Core-core repulsion = 24888.561203 eV Total energy + Delta-G solvation = -4072.413821 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.41233 -40.97063 -40.32729 -38.86051 -36.58060 -35.59130 -33.50048 -32.42938 -31.94031 -31.16769 -29.96844 -29.30848 -28.04653 -26.06716 -24.95383 -24.32664 -23.59258 -23.24445 -21.91516 -21.01662 -20.73331 -18.93906 -18.87032 -17.76793 -17.62596 -17.26033 -17.01636 -16.83938 -16.58562 -16.25492 -15.86915 -15.62853 -15.47613 -15.00523 -14.83039 -14.40755 -14.26945 -13.97492 -13.92002 -13.68658 -13.48544 -13.35429 -13.04964 -12.88529 -12.76128 -12.63714 -12.49115 -12.38830 -12.25847 -12.16702 -12.10894 -12.07094 -11.80026 -11.53398 -11.42800 -11.28116 -10.83370 -10.62787 -10.44337 -9.69530 -8.77211 -7.81773 -5.32324 0.03105 0.55498 0.92348 1.48949 1.51421 1.57637 1.85238 2.13739 2.52521 2.73055 3.03695 3.24012 3.30127 3.33435 3.52359 3.54510 3.76577 3.84611 3.92085 3.94677 4.00894 4.12376 4.21798 4.30102 4.35233 4.37587 4.45563 4.55106 4.61118 4.72035 4.76703 4.81269 4.85259 4.89175 4.95190 5.01741 5.18277 5.22973 5.30587 5.34903 5.43572 5.65728 5.66079 5.73502 6.33281 6.41449 6.75576 7.01730 7.15369 7.84582 8.29534 9.20993 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.033310 B = 0.002157 C = 0.002114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.375638 B =12975.416004 C =13243.979979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.178 3.822 2 N -0.601 5.601 3 C -0.268 4.268 4 H 0.071 0.929 5 C -0.049 4.049 6 N -0.935 5.935 7 Si 0.971 3.029 8 H -0.280 1.280 9 H -0.294 1.294 10 H -0.274 1.274 11 C 0.168 3.832 12 H 0.076 0.924 13 C -0.141 4.141 14 C 0.127 3.873 15 N -0.600 5.600 16 C 0.611 3.389 17 O -0.575 6.575 18 C -0.115 4.115 19 C 0.114 3.886 20 N -0.341 5.341 21 C 0.106 3.894 22 H 0.155 0.845 23 C -0.161 4.161 24 C 0.042 3.958 25 O -0.393 6.393 26 C 0.035 3.965 27 N -0.077 5.077 28 N -0.214 5.214 29 C 0.099 3.901 30 H 0.012 0.988 31 H 0.016 0.984 32 H 0.027 0.973 33 H 0.249 0.751 34 H 0.083 0.917 35 H 0.066 0.934 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.219 0.781 39 H 0.126 0.874 40 H 0.067 0.933 41 H 0.095 0.905 42 H 0.100 0.900 43 H 0.099 0.901 44 H 0.123 0.877 45 H 0.064 0.936 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.400 -31.700 -4.852 32.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.322 5.322 3 C -0.398 4.398 4 H 0.089 0.911 5 C -0.244 4.244 6 N -0.581 5.581 7 Si 0.799 3.201 8 H -0.206 1.206 9 H -0.220 1.220 10 H -0.200 1.200 11 C 0.059 3.941 12 H 0.094 0.906 13 C -0.181 4.181 14 C 0.005 3.995 15 N -0.331 5.331 16 C 0.399 3.601 17 O -0.455 6.455 18 C -0.254 4.254 19 C -0.043 4.043 20 N -0.127 5.127 21 C 0.006 3.994 22 H 0.173 0.827 23 C -0.199 4.199 24 C -0.034 4.034 25 O -0.312 6.312 26 C -0.042 4.042 27 N -0.057 5.057 28 N -0.087 5.087 29 C -0.026 4.026 30 H 0.030 0.970 31 H 0.035 0.965 32 H 0.045 0.955 33 H 0.058 0.942 34 H 0.101 0.899 35 H 0.085 0.915 36 H 0.094 0.906 37 H 0.099 0.901 38 H 0.236 0.764 39 H 0.144 0.856 40 H 0.086 0.914 41 H 0.113 0.887 42 H 0.118 0.882 43 H 0.117 0.883 44 H 0.141 0.859 45 H 0.083 0.917 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.300 -31.758 -4.149 32.641 hybrid contribution -0.061 1.436 -0.779 1.635 sum 6.239 -30.322 -4.928 31.347 Atomic orbital electron populations 1.20522 0.82594 0.95664 0.97909 1.43957 1.02054 1.00759 1.85434 1.19504 0.99059 0.86681 1.34555 0.91087 1.25807 0.98480 1.01887 0.98266 1.70214 1.19869 1.27896 1.40143 0.85296 0.77752 0.79382 0.77703 1.20638 1.22027 1.20004 1.21508 0.95910 0.84833 0.91817 0.90587 1.23099 1.02140 0.93347 0.99549 1.22014 1.02626 0.97039 0.77843 1.48251 1.67646 1.08631 1.08601 1.16686 0.76528 0.82227 0.84683 1.90776 1.55410 1.84213 1.15055 1.21189 1.18225 0.95919 0.90080 1.23463 0.95416 0.86098 0.99362 1.50831 1.46458 1.10048 1.05320 1.23578 0.98922 0.74762 1.02181 0.82706 1.23471 0.95754 1.01491 0.99212 1.23733 0.94279 0.93818 0.91554 1.89259 1.39856 1.64616 1.37472 1.24028 0.91743 1.05115 0.83344 1.81915 1.21603 1.01992 1.00166 1.74735 1.10554 1.06258 1.17200 1.22719 1.00527 0.79883 0.99426 0.97017 0.96544 0.95474 0.94177 0.89877 0.91542 0.90592 0.90139 0.76442 0.85621 0.91393 0.88697 0.88161 0.88259 0.85900 0.91730 0.91994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.87 7.59 127.77 0.97 9.84 16 2 N -0.60 -30.22 2.96 -695.03 -2.06 -32.28 16 3 C -0.27 -14.75 9.61 84.03 0.81 -13.95 16 4 H 0.07 3.79 7.85 -2.91 -0.02 3.77 16 5 C -0.05 -2.75 5.14 84.86 0.44 -2.31 16 6 N -0.94 -55.19 10.65 21.65 0.23 -54.95 16 7 Si 0.97 45.30 29.57 68.60 2.03 47.33 16 8 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 9 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 10 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 11 C 0.17 6.95 3.54 46.38 0.16 7.12 16 12 H 0.08 3.16 7.96 -2.38 -0.02 3.14 16 13 C -0.14 -5.01 6.51 31.79 0.21 -4.80 16 14 C 0.13 3.95 5.52 86.73 0.48 4.43 16 15 N -0.60 -20.80 3.33 -815.53 -2.71 -23.51 16 16 C 0.61 20.95 7.85 86.69 0.68 21.63 16 17 O -0.57 -22.48 17.12 -4.03 -0.07 -22.55 16 18 C -0.12 -3.21 6.85 40.81 0.28 -2.93 16 19 C 0.11 2.38 10.04 83.85 0.84 3.22 16 20 N -0.34 -5.72 3.53 -321.73 -1.14 -6.85 16 21 C 0.11 0.77 4.28 46.01 0.20 0.97 16 22 H 0.16 0.42 8.14 -2.39 -0.02 0.40 16 23 C -0.16 -0.86 6.87 31.61 0.22 -0.65 16 24 C 0.04 0.21 7.65 72.48 0.55 0.77 16 25 O -0.39 -4.22 11.65 -148.98 -1.74 -5.96 16 26 C 0.04 0.21 6.65 72.48 0.48 0.69 16 27 N -0.08 -1.79 13.78 37.02 0.51 -1.28 16 28 N -0.21 -5.90 9.78 -50.00 -0.49 -6.39 16 29 C 0.10 3.83 6.46 86.85 0.56 4.40 16 30 H 0.01 0.62 7.35 -2.38 -0.02 0.61 16 31 H 0.02 0.87 7.32 -2.39 -0.02 0.85 16 32 H 0.03 1.18 6.34 -2.39 -0.02 1.17 16 33 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 34 H 0.08 2.84 8.14 -2.39 -0.02 2.82 16 35 H 0.07 2.49 7.08 -2.39 -0.02 2.47 16 36 H 0.08 2.25 7.75 -2.39 -0.02 2.23 16 37 H 0.08 2.36 7.60 -2.39 -0.02 2.34 16 38 H 0.22 3.81 7.77 -2.91 -0.02 3.79 16 39 H 0.13 0.05 8.14 -2.39 -0.02 0.03 16 40 H 0.07 0.70 7.96 -2.39 -0.02 0.68 16 41 H 0.09 0.04 8.14 -2.39 -0.02 0.02 16 42 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 43 H 0.10 0.75 7.30 -2.39 -0.02 0.74 16 44 H 0.12 0.00 8.14 -2.39 -0.02 -0.02 16 45 H 0.06 2.61 8.04 -2.39 -0.02 2.59 16 46 H 0.06 2.50 6.33 -2.39 -0.02 2.48 16 Total: -1.00 -73.11 372.05 2.44 -70.67 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: 0.99 Total: 7.35 kcal Atomic # 6 Polarization: 21.54 SS G_CDS: 6.88 Total: 28.42 kcal Atomic # 7 Polarization: -119.62 SS G_CDS: -5.65 Total: -125.27 kcal Atomic # 8 Polarization: -26.70 SS G_CDS: -1.81 Total: -28.51 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Total: -73.11 2.44 -70.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972692312.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.963 kcal (2) G-P(sol) polarization free energy of solvation -73.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds