Wall clock time and date at job start Tue Mar 31 2020 18:29:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42898 * 114.00236 * 2 1 4 4 C 1.53002 * 109.47361 * 180.02562 * 3 2 1 5 5 N 1.46506 * 109.47275 * 180.02562 * 4 3 2 6 6 C 1.34809 * 126.60020 * 125.00126 * 5 4 3 7 7 C 1.36594 * 106.84167 * 179.97438 * 6 5 4 8 8 C 1.47522 * 125.76811 * 179.73762 * 7 6 5 9 9 O 1.21591 * 120.00100 * 359.97438 * 8 7 6 10 10 N 1.34782 * 119.99914 * 179.97438 * 8 7 6 11 11 C 1.46497 * 120.00314 * 179.97438 * 10 8 7 12 12 C 1.52993 * 109.47384 * 179.97438 * 11 10 8 13 13 H 1.09005 * 115.51634 * 29.58596 * 12 11 10 14 14 C 1.53006 * 117.44429 * 244.24348 * 12 11 10 15 15 H 1.08997 * 119.53531 * 4.11700 * 14 12 11 16 16 C 1.57686 * 116.11172 * 161.63645 * 14 12 11 17 17 N 1.48150 * 104.67252 * 87.30728 * 16 14 12 18 18 C 1.36941 * 127.83654 * 139.77756 * 17 16 14 19 19 H 1.08004 * 120.00021 * 344.32962 * 18 17 16 20 20 C 1.38808 * 120.00078 * 164.33690 * 18 17 16 21 21 N 1.31618 * 119.99916 * 350.56514 * 20 18 17 22 22 Si 1.86799 * 120.00098 * 170.56795 * 20 18 17 23 23 H 1.48502 * 109.46831 * 60.00148 * 22 20 18 24 24 H 1.48502 * 109.47152 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.47252 * 299.99976 * 22 20 18 26 26 C 1.48144 * 104.32608 * 319.77216 * 17 16 14 27 27 C 1.53000 * 117.44499 * 175.00200 * 12 11 10 28 28 H 1.09004 * 119.53576 * 355.88139 * 27 12 11 29 29 N 1.34399 * 108.45663 * 359.97438 * 7 6 5 30 30 N 1.28754 * 109.52469 * 0.02562 * 29 7 6 31 31 H 1.08995 * 109.47187 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46997 * 300.00034 * 1 2 3 33 33 H 1.09005 * 109.47107 * 59.99280 * 1 2 3 34 34 H 1.09003 * 109.47028 * 60.00249 * 3 2 1 35 35 H 1.09001 * 109.47552 * 300.00319 * 3 2 1 36 36 H 1.08991 * 109.47258 * 59.99677 * 4 3 2 37 37 H 1.09008 * 109.46870 * 299.99619 * 4 3 2 38 38 H 1.08005 * 126.57708 * 359.95271 * 6 5 4 39 39 H 0.97006 * 119.99846 * 359.97438 * 10 8 7 40 40 H 1.09003 * 109.47154 * 300.00537 * 11 10 8 41 41 H 1.09008 * 109.46715 * 59.99829 * 11 10 8 42 42 H 1.09005 * 110.92279 * 328.23143 * 16 14 12 43 43 H 1.09002 * 109.93715 * 205.88914 * 16 14 12 44 44 H 0.97001 * 119.99899 * 179.97438 * 21 20 18 45 45 H 1.08993 * 110.40683 * 280.80244 * 26 17 16 46 46 H 1.09000 * 110.40920 * 158.36536 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 4.1314 2.5230 0.0000 6 6 5.0258 3.0042 0.8865 7 6 5.3070 4.2863 0.5086 8 6 6.2356 5.2038 1.1958 9 8 6.8281 4.8357 2.1917 10 7 6.4271 6.4502 0.7197 11 6 7.3487 7.3616 1.4025 12 6 7.3827 8.7007 0.6633 13 1 6.4641 8.9738 0.1440 14 6 8.7065 9.1169 0.0188 15 1 9.5544 8.4325 0.0428 16 6 8.6175 10.2359 -1.0887 17 7 8.7015 11.5118 -0.3406 18 6 9.3842 12.6466 -0.6893 19 1 10.1413 12.6065 -1.4584 20 6 9.1030 13.8484 -0.0542 21 7 8.0617 13.9424 0.7453 22 14 10.2026 15.3324 -0.3341 23 1 10.2050 15.6814 -1.7775 24 1 9.6904 16.4833 0.4521 25 1 11.5861 15.0122 0.1001 26 6 7.8795 11.2817 0.8701 27 6 8.2015 9.8312 1.2897 28 1 8.6733 9.6789 2.2604 29 7 4.5908 4.5723 -0.5921 30 7 3.8819 3.5494 -0.9220 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5140 -0.8900 34 1 1.6887 1.8463 0.8900 35 1 1.6886 1.8464 -0.8899 36 1 3.8568 0.6439 -0.8907 37 1 3.8575 0.6435 0.8892 38 1 5.4402 2.4771 1.7332 39 1 5.9546 6.7437 -0.0750 40 1 7.0110 7.5199 2.4267 41 1 8.3484 6.9270 1.4126 42 1 7.6732 10.1739 -1.6297 43 1 9.4565 10.1437 -1.7785 44 1 7.8655 14.7822 1.1894 45 1 6.8200 11.3831 0.6351 46 1 8.1628 11.9775 1.6599 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000978139572.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:51 Heat of formation + Delta-G solvation = 81.619850 kcal Electronic energy + Delta-G solvation = -27154.987055 eV Core-core repulsion = 23084.365374 eV Total energy + Delta-G solvation = -4070.621681 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.59279 -39.57709 -38.72082 -38.49694 -35.43260 -34.94528 -33.30362 -31.58322 -30.92541 -30.30283 -27.53126 -27.02364 -26.88620 -25.05990 -24.61177 -23.31643 -22.23934 -21.06169 -20.69420 -19.87265 -19.23408 -18.39338 -17.30938 -17.06726 -16.76105 -16.38577 -16.15854 -16.03397 -15.61859 -15.03672 -14.87010 -14.81492 -14.43522 -14.21963 -13.83567 -13.56028 -13.12733 -12.92707 -12.77302 -12.68966 -12.59756 -12.31223 -12.06965 -11.82402 -11.59162 -11.21060 -11.05528 -10.83915 -10.79689 -10.60478 -10.44943 -10.34063 -10.22086 -10.11685 -9.70645 -9.68508 -9.38191 -9.11612 -8.91460 -8.60027 -6.84020 -5.77512 -3.11547 0.72432 1.42304 1.43500 3.01618 3.03247 3.13880 3.40706 3.45215 3.46482 3.82633 3.90684 4.09802 4.19943 4.39092 4.43946 4.48891 4.56950 4.65103 4.68532 4.76586 4.89621 4.94138 5.05165 5.06330 5.33064 5.40115 5.45692 5.49121 5.55937 5.82592 5.83456 5.86056 5.94266 5.99228 6.26989 6.30989 6.35914 6.58516 6.71195 6.74556 6.95156 7.35109 7.39616 7.55793 7.63898 7.74125 8.07931 8.23568 9.13458 9.76387 10.53895 11.36867 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.032386 B = 0.001574 C = 0.001546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.365080 B =17789.338874 C =18105.043392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.389 6.389 3 C 0.049 3.951 4 C 0.125 3.875 5 N -0.363 5.363 6 C 0.098 3.902 7 C -0.098 4.098 8 C 0.602 3.398 9 O -0.543 6.543 10 N -0.706 5.706 11 C 0.155 3.845 12 C -0.154 4.154 13 H 0.104 0.896 14 C -0.171 4.171 15 H 0.107 0.893 16 C 0.155 3.845 17 N -0.595 5.595 18 C -0.228 4.228 19 H 0.076 0.924 20 C -0.005 4.005 21 N -0.916 5.916 22 Si 0.913 3.087 23 H -0.284 1.284 24 H -0.290 1.290 25 H -0.284 1.284 26 C 0.184 3.816 27 C -0.162 4.162 28 H 0.102 0.898 29 N -0.198 5.198 30 N -0.063 5.063 31 H 0.092 0.908 32 H 0.045 0.955 33 H 0.047 0.953 34 H 0.059 0.941 35 H 0.070 0.930 36 H 0.109 0.891 37 H 0.115 0.885 38 H 0.207 0.793 39 H 0.410 0.590 40 H 0.073 0.927 41 H 0.070 0.930 42 H 0.028 0.972 43 H 0.048 0.952 44 H 0.255 0.745 45 H 0.024 0.976 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.872 -29.377 0.851 32.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.307 6.307 3 C -0.029 4.029 4 C 0.004 3.996 5 N -0.149 5.149 6 C -0.058 4.058 7 C -0.237 4.237 8 C 0.386 3.614 9 O -0.420 6.420 10 N -0.356 5.356 11 C 0.032 3.968 12 C -0.173 4.173 13 H 0.122 0.878 14 C -0.191 4.191 15 H 0.125 0.875 16 C 0.029 3.971 17 N -0.318 5.318 18 C -0.356 4.356 19 H 0.094 0.906 20 C -0.202 4.202 21 N -0.562 5.562 22 Si 0.743 3.257 23 H -0.210 1.210 24 H -0.215 1.215 25 H -0.211 1.211 26 C 0.058 3.942 27 C -0.182 4.182 28 H 0.120 0.880 29 N -0.073 5.073 30 N -0.043 5.043 31 H 0.110 0.890 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.078 0.922 35 H 0.088 0.912 36 H 0.128 0.872 37 H 0.134 0.866 38 H 0.224 0.776 39 H 0.246 0.754 40 H 0.092 0.908 41 H 0.088 0.912 42 H 0.045 0.955 43 H 0.066 0.934 44 H 0.065 0.935 45 H 0.042 0.958 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -13.098 -29.113 0.354 31.926 hybrid contribution 0.528 0.621 0.417 0.915 sum -12.571 -28.492 0.771 31.152 Atomic orbital electron populations 1.22820 0.79518 1.03353 1.00616 1.87776 1.20909 1.26392 1.95644 1.22626 0.91824 0.85874 1.02528 1.21703 0.93273 0.77930 1.06695 1.50303 1.30606 1.13579 1.20436 1.23407 0.91927 0.94867 0.95594 1.21529 1.07359 0.95620 0.99163 1.16709 0.80341 0.81215 0.83143 1.90815 1.49285 1.76341 1.25527 1.45842 1.45675 1.12591 1.31491 1.20947 0.92976 0.87244 0.95647 1.22555 0.96669 0.94100 1.03997 0.87770 1.24709 0.95790 1.00926 0.97672 0.87487 1.21722 0.98242 0.85365 0.91801 1.45142 1.57429 1.09785 1.19421 1.18953 1.12850 0.84632 1.19164 0.90645 1.24886 0.97531 0.97305 1.00495 1.69892 1.26880 1.25631 1.33768 0.86197 0.79934 0.82009 0.77599 1.21001 1.21549 1.21074 1.21074 0.93469 0.88593 0.91038 1.24181 1.02602 0.94769 0.96687 0.87995 1.74675 1.03656 1.18897 1.10026 1.82020 1.20164 0.90465 1.11669 0.88958 0.93625 0.93474 0.92238 0.91164 0.87241 0.86641 0.77604 0.75394 0.90833 0.91153 0.95470 0.93352 0.93523 0.95822 0.89291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.12 11.01 101.05 1.11 1.23 16 2 O -0.39 -2.16 10.70 -35.23 -0.38 -2.54 16 3 C 0.05 0.24 6.14 37.16 0.23 0.47 16 4 C 0.13 0.51 6.91 -4.04 -0.03 0.48 16 5 N -0.36 -2.70 3.69 -61.06 -0.23 -2.92 16 6 C 0.10 0.78 11.27 -16.84 -0.19 0.59 16 7 C -0.10 -1.09 6.99 -83.55 -0.58 -1.67 16 8 C 0.60 7.89 7.82 -12.47 -0.10 7.79 16 9 O -0.54 -8.33 16.86 5.29 0.09 -8.24 16 10 N -0.71 -8.98 5.55 -61.35 -0.34 -9.32 16 11 C 0.15 2.12 5.95 -4.05 -0.02 2.09 16 12 C -0.15 -2.41 5.34 -90.62 -0.48 -2.89 16 13 H 0.10 1.65 8.04 -51.93 -0.42 1.23 16 14 C -0.17 -3.03 7.03 -87.38 -0.61 -3.64 16 15 H 0.11 1.74 8.12 -51.93 -0.42 1.32 16 16 C 0.16 3.28 7.10 -0.57 0.00 3.27 16 17 N -0.59 -15.35 3.38 -166.73 -0.56 -15.91 16 18 C -0.23 -6.40 10.35 -15.06 -0.16 -6.55 16 19 H 0.08 2.04 7.85 -52.48 -0.41 1.63 16 20 C -0.01 -0.14 5.39 -17.43 -0.09 -0.24 16 21 N -0.92 -26.91 10.88 55.49 0.60 -26.30 16 22 Si 0.91 22.02 29.56 -169.99 -5.03 17.00 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 25 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 26 C 0.18 4.43 5.70 -2.41 -0.01 4.41 16 27 C -0.16 -3.06 6.77 -89.22 -0.60 -3.67 16 28 H 0.10 1.82 8.14 -51.93 -0.42 1.39 16 29 N -0.20 -2.38 12.04 32.84 0.40 -1.99 16 30 N -0.06 -0.67 13.65 60.35 0.82 0.15 16 31 H 0.09 0.21 8.14 -51.93 -0.42 -0.22 16 32 H 0.05 0.13 8.14 -51.93 -0.42 -0.29 16 33 H 0.05 0.14 8.14 -51.93 -0.42 -0.28 16 34 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 35 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.11 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.12 0.19 8.08 -51.92 -0.42 -0.22 16 38 H 0.21 0.97 8.06 -52.48 -0.42 0.55 16 39 H 0.41 4.86 8.09 -40.82 -0.33 4.53 16 40 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.07 0.98 7.94 -51.92 -0.41 0.57 16 42 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 45 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.09 2.39 6.53 -51.93 -0.34 2.05 16 LS Contribution 391.99 15.07 5.91 5.91 Total: -1.00 -34.16 391.99 -7.23 -41.39 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -6.96 Total: 1.11 kcal Atomic # 6 Polarization: 3.23 SS G_CDS: -1.55 Total: 1.68 kcal Atomic # 7 Polarization: -56.99 SS G_CDS: 0.69 Total: -56.30 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: -0.29 Total: -10.79 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.03 Total: 17.00 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.16 -7.23 -41.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978139572.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.006 kcal (2) G-P(sol) polarization free energy of solvation -34.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds