Wall clock time and date at job start Tue Mar 31 2020 18:29:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42898 * 114.00236 * 2 1 4 4 C 1.53002 * 109.47361 * 180.02562 * 3 2 1 5 5 N 1.46506 * 109.47275 * 180.02562 * 4 3 2 6 6 C 1.34809 * 126.60020 * 125.00126 * 5 4 3 7 7 C 1.36594 * 106.84167 * 179.97438 * 6 5 4 8 8 C 1.47522 * 125.76811 * 179.73762 * 7 6 5 9 9 O 1.21591 * 120.00100 * 359.97438 * 8 7 6 10 10 N 1.34782 * 119.99914 * 179.97438 * 8 7 6 11 11 C 1.46497 * 120.00314 * 179.97438 * 10 8 7 12 12 C 1.52993 * 109.47384 * 179.97438 * 11 10 8 13 13 H 1.09005 * 115.51634 * 29.58596 * 12 11 10 14 14 C 1.53006 * 117.44429 * 244.24348 * 12 11 10 15 15 H 1.08997 * 119.53531 * 4.11700 * 14 12 11 16 16 C 1.57686 * 116.11172 * 161.63645 * 14 12 11 17 17 N 1.48150 * 104.67252 * 87.30728 * 16 14 12 18 18 C 1.36941 * 127.83654 * 139.77756 * 17 16 14 19 19 H 1.08004 * 120.00021 * 344.32962 * 18 17 16 20 20 C 1.38808 * 120.00078 * 164.33690 * 18 17 16 21 21 N 1.31618 * 119.99916 * 350.56514 * 20 18 17 22 22 Si 1.86799 * 120.00098 * 170.56795 * 20 18 17 23 23 H 1.48502 * 109.46831 * 60.00148 * 22 20 18 24 24 H 1.48502 * 109.47152 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.47252 * 299.99976 * 22 20 18 26 26 C 1.48144 * 104.32608 * 319.77216 * 17 16 14 27 27 C 1.53000 * 117.44499 * 175.00200 * 12 11 10 28 28 H 1.09004 * 119.53576 * 355.88139 * 27 12 11 29 29 N 1.34399 * 108.45663 * 359.97438 * 7 6 5 30 30 N 1.28754 * 109.52469 * 0.02562 * 29 7 6 31 31 H 1.08995 * 109.47187 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46997 * 300.00034 * 1 2 3 33 33 H 1.09005 * 109.47107 * 59.99280 * 1 2 3 34 34 H 1.09003 * 109.47028 * 60.00249 * 3 2 1 35 35 H 1.09001 * 109.47552 * 300.00319 * 3 2 1 36 36 H 1.08991 * 109.47258 * 59.99677 * 4 3 2 37 37 H 1.09008 * 109.46870 * 299.99619 * 4 3 2 38 38 H 1.08005 * 126.57708 * 359.95271 * 6 5 4 39 39 H 0.97006 * 119.99846 * 359.97438 * 10 8 7 40 40 H 1.09003 * 109.47154 * 300.00537 * 11 10 8 41 41 H 1.09008 * 109.46715 * 59.99829 * 11 10 8 42 42 H 1.09005 * 110.92279 * 328.23143 * 16 14 12 43 43 H 1.09002 * 109.93715 * 205.88914 * 16 14 12 44 44 H 0.97001 * 119.99899 * 179.97438 * 21 20 18 45 45 H 1.08993 * 110.40683 * 280.80244 * 26 17 16 46 46 H 1.09000 * 110.40920 * 158.36536 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 4.1314 2.5230 0.0000 6 6 5.0258 3.0042 0.8865 7 6 5.3070 4.2863 0.5086 8 6 6.2356 5.2038 1.1958 9 8 6.8281 4.8357 2.1917 10 7 6.4271 6.4502 0.7197 11 6 7.3487 7.3616 1.4025 12 6 7.3827 8.7007 0.6633 13 1 6.4641 8.9738 0.1440 14 6 8.7065 9.1169 0.0188 15 1 9.5544 8.4325 0.0428 16 6 8.6175 10.2359 -1.0887 17 7 8.7015 11.5118 -0.3406 18 6 9.3842 12.6466 -0.6893 19 1 10.1413 12.6065 -1.4584 20 6 9.1030 13.8484 -0.0542 21 7 8.0617 13.9424 0.7453 22 14 10.2026 15.3324 -0.3341 23 1 10.2050 15.6814 -1.7775 24 1 9.6904 16.4833 0.4521 25 1 11.5861 15.0122 0.1001 26 6 7.8795 11.2817 0.8701 27 6 8.2015 9.8312 1.2897 28 1 8.6733 9.6789 2.2604 29 7 4.5908 4.5723 -0.5921 30 7 3.8819 3.5494 -0.9220 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5140 -0.8900 34 1 1.6887 1.8463 0.8900 35 1 1.6886 1.8464 -0.8899 36 1 3.8568 0.6439 -0.8907 37 1 3.8575 0.6435 0.8892 38 1 5.4402 2.4771 1.7332 39 1 5.9546 6.7437 -0.0750 40 1 7.0110 7.5199 2.4267 41 1 8.3484 6.9270 1.4126 42 1 7.6732 10.1739 -1.6297 43 1 9.4565 10.1437 -1.7785 44 1 7.8655 14.7822 1.1894 45 1 6.8200 11.3831 0.6351 46 1 8.1628 11.9775 1.6599 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000978139572.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:50 Heat of formation + Delta-G solvation = 56.805481 kcal Electronic energy + Delta-G solvation = -27156.063086 eV Core-core repulsion = 23084.365374 eV Total energy + Delta-G solvation = -4071.697712 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.29953 -40.73648 -39.95415 -39.06475 -36.36273 -35.96502 -34.94703 -32.76891 -32.20794 -31.00354 -28.94994 -28.62169 -27.43256 -26.70835 -25.11858 -24.28367 -22.83608 -22.74655 -21.83305 -21.08531 -20.80871 -19.18407 -18.78498 -17.87598 -17.53229 -17.17896 -16.93561 -16.81271 -16.61343 -16.24826 -15.96356 -15.77386 -15.51207 -15.29066 -15.05014 -14.61766 -14.58012 -14.42167 -14.08691 -13.49040 -13.34572 -13.23157 -13.16356 -12.85727 -12.79400 -12.67458 -12.43461 -12.31642 -12.16182 -11.95731 -11.88136 -11.74192 -11.43672 -11.38301 -10.91950 -10.79973 -10.69639 -10.55422 -10.44824 -9.99672 -8.89672 -7.90777 -5.27042 0.08795 0.57991 0.90458 1.46923 1.50350 1.56902 2.04935 2.21527 2.48879 2.65986 2.78005 3.15594 3.27287 3.44991 3.62989 3.71717 3.75152 3.78630 3.89520 3.93268 4.09252 4.19063 4.21559 4.29576 4.34102 4.43433 4.47033 4.52859 4.59715 4.60449 4.68781 4.75081 4.81116 4.84426 4.93944 5.03051 5.20758 5.33917 5.36145 5.43854 5.45850 5.54803 5.68025 5.98218 6.18997 6.40006 6.85221 7.02070 7.10354 7.69440 8.48230 9.22926 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.032386 B = 0.001574 C = 0.001546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.365080 B =17789.338874 C =18105.043392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.401 6.401 3 C 0.052 3.948 4 C 0.121 3.879 5 N -0.350 5.350 6 C 0.121 3.879 7 C -0.123 4.123 8 C 0.606 3.394 9 O -0.567 6.567 10 N -0.705 5.705 11 C 0.165 3.835 12 C -0.118 4.118 13 H 0.103 0.897 14 C -0.158 4.158 15 H 0.132 0.868 16 C 0.148 3.852 17 N -0.621 5.621 18 C -0.244 4.244 19 H 0.080 0.920 20 C -0.062 4.062 21 N -0.947 5.947 22 Si 0.980 3.020 23 H -0.275 1.275 24 H -0.293 1.293 25 H -0.277 1.277 26 C 0.189 3.811 27 C -0.174 4.174 28 H 0.116 0.884 29 N -0.221 5.221 30 N -0.086 5.086 31 H 0.104 0.896 32 H 0.050 0.950 33 H 0.048 0.952 34 H 0.060 0.940 35 H 0.058 0.942 36 H 0.120 0.880 37 H 0.148 0.852 38 H 0.242 0.758 39 H 0.415 0.585 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.028 0.972 43 H 0.055 0.945 44 H 0.250 0.750 45 H 0.000 1.000 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.502 -32.047 1.003 34.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.320 6.320 3 C -0.026 4.026 4 C 0.001 3.999 5 N -0.136 5.136 6 C -0.037 4.037 7 C -0.263 4.263 8 C 0.391 3.609 9 O -0.446 6.446 10 N -0.355 5.355 11 C 0.041 3.959 12 C -0.137 4.137 13 H 0.121 0.879 14 C -0.178 4.178 15 H 0.150 0.850 16 C 0.022 3.978 17 N -0.345 5.345 18 C -0.372 4.372 19 H 0.098 0.902 20 C -0.255 4.255 21 N -0.595 5.595 22 Si 0.808 3.192 23 H -0.201 1.201 24 H -0.219 1.219 25 H -0.203 1.203 26 C 0.063 3.937 27 C -0.194 4.194 28 H 0.134 0.866 29 N -0.095 5.095 30 N -0.067 5.067 31 H 0.123 0.877 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.138 0.862 37 H 0.166 0.834 38 H 0.258 0.742 39 H 0.251 0.749 40 H 0.094 0.906 41 H 0.095 0.905 42 H 0.045 0.955 43 H 0.073 0.927 44 H 0.059 0.941 45 H 0.018 0.982 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.752 -31.830 0.461 34.292 hybrid contribution 0.314 1.332 0.332 1.408 sum -12.438 -30.498 0.793 32.946 Atomic orbital electron populations 1.22978 0.78643 1.04344 1.00971 1.87749 1.21952 1.26588 1.95689 1.22568 0.92386 0.85673 1.01984 1.22044 0.92644 0.76356 1.08844 1.50484 1.29879 1.13926 1.19275 1.23901 0.90547 0.93726 0.95516 1.21437 1.08270 0.96723 0.99872 1.16872 0.80122 0.81169 0.82742 1.90796 1.50414 1.76805 1.26598 1.45776 1.45539 1.12608 1.31591 1.20774 0.93637 0.86109 0.95340 1.22438 0.95632 0.93727 1.01878 0.87861 1.24647 0.97929 1.00183 0.94992 0.84991 1.21877 0.98462 0.84665 0.92769 1.45461 1.57414 1.10736 1.20842 1.19357 1.13037 0.85800 1.19053 0.90208 1.25737 0.98981 1.00153 1.00657 1.70093 1.28587 1.25895 1.34906 0.85135 0.78179 0.78232 0.77669 1.20060 1.21926 1.20258 1.20811 0.91880 0.91226 0.89737 1.23873 1.05220 0.92474 0.97855 0.86588 1.74647 1.04269 1.19856 1.10702 1.81954 1.20633 0.91148 1.12919 0.87724 0.93094 0.93336 0.92222 0.92374 0.86228 0.83396 0.74179 0.74902 0.90576 0.90543 0.95466 0.92673 0.94118 0.98199 0.92890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 11.01 113.37 1.25 1.40 16 2 O -0.40 -3.78 10.70 -148.98 -1.59 -5.37 16 3 C 0.05 0.42 6.14 71.98 0.44 0.86 16 4 C 0.12 0.65 6.91 86.38 0.60 1.25 16 5 N -0.35 -4.38 3.69 -347.08 -1.28 -5.66 16 6 C 0.12 1.58 11.27 83.85 0.95 2.52 16 7 C -0.12 -2.55 6.99 40.82 0.29 -2.27 16 8 C 0.61 14.84 7.82 86.69 0.68 15.52 16 9 O -0.57 -16.29 16.86 -4.00 -0.07 -16.36 16 10 N -0.70 -16.76 5.55 -466.28 -2.59 -19.35 16 11 C 0.16 4.15 5.95 86.38 0.51 4.66 16 12 C -0.12 -3.49 5.34 -10.79 -0.06 -3.55 16 13 H 0.10 3.15 8.04 -2.38 -0.02 3.13 16 14 C -0.16 -5.32 7.03 -8.70 -0.06 -5.38 16 15 H 0.13 3.86 8.12 -2.39 -0.02 3.84 16 16 C 0.15 6.17 7.10 87.72 0.62 6.79 16 17 N -0.62 -32.62 3.38 -681.42 -2.30 -34.92 16 18 C -0.24 -13.90 10.35 84.03 0.87 -13.03 16 19 H 0.08 4.34 7.85 -2.91 -0.02 4.32 16 20 C -0.06 -3.54 5.39 84.86 0.46 -3.08 16 21 N -0.95 -57.59 10.88 21.65 0.24 -57.35 16 22 Si 0.98 45.92 29.56 68.60 2.03 47.94 16 23 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 24 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 25 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 26 C 0.19 9.40 5.70 86.53 0.49 9.89 16 27 C -0.17 -6.48 6.77 -9.89 -0.07 -6.55 16 28 H 0.12 4.01 8.14 -2.38 -0.02 3.99 16 29 N -0.22 -5.11 12.04 -50.00 -0.60 -5.71 16 30 N -0.09 -1.75 13.65 37.02 0.51 -1.25 16 31 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 32 H 0.05 0.23 8.14 -2.38 -0.02 0.21 16 33 H 0.05 0.25 8.14 -2.38 -0.02 0.23 16 34 H 0.06 0.47 8.14 -2.39 -0.02 0.46 16 35 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.12 0.48 8.14 -2.39 -0.02 0.46 16 37 H 0.15 -0.11 8.08 -2.38 -0.02 -0.12 16 38 H 0.24 1.28 8.06 -2.91 -0.02 1.25 16 39 H 0.41 9.28 8.09 -92.70 -0.75 8.53 16 40 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 41 H 0.08 1.90 7.94 -2.38 -0.02 1.89 16 42 H 0.03 1.14 8.14 -2.38 -0.02 1.12 16 43 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 44 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 45 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 46 H 0.05 2.99 6.53 -2.39 -0.02 2.97 16 Total: -1.00 -75.85 391.99 1.55 -74.31 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: 0.25 Total: 14.68 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: 6.97 Total: 9.04 kcal Atomic # 7 Polarization: -118.21 SS G_CDS: -6.04 Total: -124.25 kcal Atomic # 8 Polarization: -20.07 SS G_CDS: -1.66 Total: -21.73 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.94 kcal Total: -75.85 1.55 -74.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978139572.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.115 kcal (2) G-P(sol) polarization free energy of solvation -75.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds