Wall clock time and date at job start Tue Mar 31 2020 18:25:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36939 * 119.99656 * 2 1 4 4 H 1.08002 * 119.99604 * 200.40318 * 3 2 1 5 5 C 1.38805 * 120.00498 * 20.40011 * 3 2 1 6 6 N 1.31629 * 119.99775 * 14.97833 * 5 3 2 7 7 Si 1.86795 * 120.00530 * 194.97977 * 5 3 2 8 8 H 1.48500 * 109.47232 * 85.00164 * 7 5 3 9 9 H 1.48505 * 109.47654 * 205.00386 * 7 5 3 10 10 H 1.48502 * 109.46852 * 325.00019 * 7 5 3 11 11 C 1.46493 * 120.00365 * 179.97438 * 2 1 3 12 12 C 1.53038 * 109.46261 * 300.00321 * 11 2 1 13 13 C 1.53194 * 109.31547 * 181.38574 * 12 11 2 14 14 N 1.46932 * 108.77098 * 305.36009 * 13 12 11 15 15 C 1.34773 * 120.62787 * 233.58064 * 14 13 12 16 16 O 1.21282 * 120.00465 * 0.02562 * 15 14 13 17 17 C 1.50705 * 119.99807 * 180.02562 * 15 14 13 18 18 C 1.52997 * 109.47282 * 180.02562 * 17 15 14 19 19 C 1.50697 * 109.47391 * 180.02562 * 18 17 15 20 20 C 1.38239 * 120.40478 * 269.72397 * 19 18 17 21 21 N 1.31837 * 120.82241 * 179.72439 * 20 19 18 22 22 C 1.31872 * 121.75120 * 0.53272 * 21 20 19 23 23 C 1.38420 * 120.72579 * 359.75820 * 22 21 20 24 24 F 1.35100 * 120.44662 * 179.97438 * 23 22 21 25 25 C 1.38583 * 120.40657 * 89.99653 * 19 18 17 26 26 C 1.46928 * 118.73820 * 53.86330 * 14 13 12 27 27 C 1.53049 * 109.46091 * 60.06726 * 11 2 1 28 28 H 1.08998 * 109.46859 * 275.11065 * 1 2 3 29 29 H 1.08990 * 109.47205 * 35.10894 * 1 2 3 30 30 H 1.08999 * 109.46593 * 155.11418 * 1 2 3 31 31 H 0.96998 * 120.00120 * 180.02562 * 6 5 3 32 32 H 1.09002 * 109.45288 * 180.02562 * 11 2 1 33 33 H 1.09000 * 109.50243 * 61.42765 * 12 11 2 34 34 H 1.09006 * 109.51926 * 301.34905 * 12 11 2 35 35 H 1.08997 * 109.58880 * 185.57574 * 13 12 11 36 36 H 1.08993 * 109.70502 * 65.21761 * 13 12 11 37 37 H 1.09001 * 109.46699 * 60.00600 * 17 15 14 38 38 H 1.09002 * 109.46962 * 300.00895 * 17 15 14 39 39 H 1.09007 * 109.46946 * 300.00327 * 18 17 15 40 40 H 1.09000 * 109.46974 * 59.99871 * 18 17 15 41 41 H 1.08003 * 119.58379 * 359.97438 * 20 19 18 42 42 H 1.07999 * 119.64022 * 179.72891 * 22 21 20 43 43 H 1.08000 * 120.80596 * 359.97438 * 25 19 18 44 44 H 1.09001 * 109.58384 * 65.92648 * 26 14 13 45 45 H 1.08993 * 109.58186 * 186.34655 * 26 14 13 46 46 H 1.08997 * 109.49668 * 298.57091 * 27 11 2 47 47 H 1.09003 * 109.49451 * 58.62708 * 27 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1788 1.2153 -0.3261 5 6 1.5209 2.3504 0.4190 6 7 0.3880 2.2832 1.0858 7 14 2.2825 4.0127 0.0367 8 1 1.8676 4.4466 -1.3216 9 1 1.8229 5.0096 1.0368 10 1 3.7625 3.9033 0.0910 11 6 2.1976 -1.2686 0.0006 12 6 1.8277 -2.0704 1.2505 13 6 2.6214 -3.3806 1.2653 14 7 2.3851 -4.0909 0.0009 15 6 1.9590 -5.3696 0.0010 16 8 1.7667 -5.9447 1.0512 17 6 1.7217 -6.0847 -1.3042 18 6 1.2454 -7.5115 -1.0247 19 6 1.0087 -8.2268 -2.3298 20 6 -0.2338 -8.1864 -2.9344 21 7 -0.4486 -8.8047 -4.0788 22 6 0.5002 -9.4907 -4.6857 23 6 1.7681 -9.5813 -4.1379 24 9 2.7358 -10.2860 -4.7642 25 6 2.0323 -8.9379 -2.9357 26 6 2.6280 -3.3828 -1.2633 27 6 1.8290 -2.0708 -1.2496 28 1 -0.3633 0.0915 1.0236 29 1 -0.3633 0.8406 -0.5910 30 1 -0.3632 -0.9323 -0.4325 31 1 -0.0516 3.0969 1.3783 32 1 3.2692 -1.0690 0.0009 33 1 0.7605 -2.2917 1.2383 34 1 2.0686 -1.4891 2.1406 35 1 2.2901 -3.9992 2.0993 36 1 3.6847 -3.1651 1.3701 37 1 2.6497 -6.1163 -1.8751 38 1 0.9610 -5.5535 -1.8764 39 1 2.0059 -8.0428 -0.4523 40 1 0.3174 -7.4795 -0.4539 41 1 -1.0375 -7.6382 -2.4654 42 1 0.2855 -9.9877 -5.6202 43 1 3.0121 -8.9901 -2.4843 44 1 3.6915 -3.1652 -1.3616 45 1 2.3011 -4.0028 -2.0979 46 1 0.7617 -2.2920 -1.2384 47 1 2.0705 -1.4892 -2.1393 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000985817208.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:52 Heat of formation + Delta-G solvation = -27.833054 kcal Electronic energy + Delta-G solvation = -28431.362232 eV Core-core repulsion = 24336.074355 eV Total energy + Delta-G solvation = -4095.287876 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.175 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -49.39740 -40.69121 -40.02674 -37.65062 -35.15857 -34.97042 -32.38777 -32.03460 -31.13015 -30.15929 -29.59893 -26.07810 -25.93786 -24.58306 -24.14121 -22.92928 -22.36744 -21.66135 -19.76068 -18.52180 -17.85610 -17.77142 -17.32173 -16.90746 -16.75657 -16.24446 -15.81662 -15.68142 -15.05757 -14.40929 -14.22228 -14.08634 -13.96155 -13.85258 -13.66644 -13.52874 -13.38177 -13.19831 -12.91427 -12.60972 -12.42728 -12.27949 -12.13034 -11.73427 -11.50408 -11.40859 -10.97992 -10.89430 -10.80816 -10.42640 -10.28107 -10.23634 -10.14852 -10.04791 -9.86840 -9.77326 -9.60824 -9.29633 -8.59619 -8.49713 -6.80854 -5.74361 -3.18579 0.44551 0.61452 2.62270 2.99834 3.19983 3.36356 3.42584 3.43837 3.54669 3.97585 4.14660 4.27462 4.42716 4.45719 4.51562 4.65896 4.73155 4.92446 5.02732 5.16718 5.20345 5.30527 5.33823 5.35053 5.38509 5.44617 5.46323 5.58121 5.73903 5.76186 5.79282 5.85334 5.98499 6.11323 6.17018 6.20901 6.32837 6.49094 6.57185 6.75132 6.93656 6.96825 7.36704 7.36808 7.47520 7.70497 7.78617 8.18118 8.36520 9.21130 9.85393 10.33656 11.30398 Molecular weight = 335.18amu Principal moments of inertia in cm(-1) A = 0.021040 B = 0.002087 C = 0.002030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.477071 B =13411.160250 C =13788.569966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.164 3.836 2 N -0.597 5.597 3 C -0.255 4.255 4 H 0.069 0.931 5 C 0.000 4.000 6 N -0.907 5.907 7 Si 0.904 3.096 8 H -0.288 1.288 9 H -0.292 1.292 10 H -0.281 1.281 11 C 0.180 3.820 12 C -0.144 4.144 13 C 0.113 3.887 14 N -0.605 5.605 15 C 0.514 3.486 16 O -0.550 6.550 17 C -0.136 4.136 18 C -0.063 4.063 19 C -0.100 4.100 20 C 0.094 3.906 21 N -0.454 5.454 22 C 0.067 3.933 23 C 0.050 3.950 24 F -0.131 7.131 25 C -0.108 4.108 26 C 0.108 3.892 27 C -0.148 4.148 28 H 0.028 0.972 29 H 0.041 0.959 30 H -0.002 1.002 31 H 0.252 0.748 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.064 0.936 37 H 0.093 0.907 38 H 0.097 0.903 39 H 0.086 0.914 40 H 0.091 0.909 41 H 0.166 0.834 42 H 0.166 0.834 43 H 0.148 0.852 44 H 0.069 0.931 45 H 0.078 0.922 46 H 0.063 0.937 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.956 -22.245 -8.979 24.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.318 5.318 3 C -0.384 4.384 4 H 0.086 0.914 5 C -0.198 4.198 6 N -0.552 5.552 7 Si 0.734 3.266 8 H -0.215 1.215 9 H -0.218 1.218 10 H -0.206 1.206 11 C 0.071 3.929 12 C -0.185 4.185 13 C -0.009 4.009 14 N -0.338 5.338 15 C 0.302 3.698 16 O -0.428 6.428 17 C -0.176 4.176 18 C -0.101 4.101 19 C -0.102 4.102 20 C -0.064 4.064 21 N -0.161 5.161 22 C -0.091 4.091 23 C 0.028 3.972 24 F -0.109 7.109 25 C -0.134 4.134 26 C -0.015 4.015 27 C -0.188 4.188 28 H 0.046 0.954 29 H 0.059 0.941 30 H 0.016 0.984 31 H 0.062 0.938 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.094 0.906 35 H 0.104 0.896 36 H 0.082 0.918 37 H 0.112 0.888 38 H 0.116 0.884 39 H 0.105 0.895 40 H 0.109 0.891 41 H 0.183 0.817 42 H 0.183 0.817 43 H 0.166 0.834 44 H 0.087 0.913 45 H 0.096 0.904 46 H 0.081 0.919 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.943 -22.337 -8.762 24.073 hybrid contribution 1.372 0.947 0.016 1.667 sum 3.314 -21.390 -8.747 23.345 Atomic orbital electron populations 1.20739 0.82713 0.95275 0.99338 1.43983 1.01817 1.00201 1.85797 1.19216 0.96913 0.84999 1.37312 0.91359 1.24969 0.97916 0.98351 0.98567 1.70092 1.18862 1.26799 1.39409 0.86283 0.78592 0.84100 0.77607 1.21519 1.21804 1.20610 1.20267 0.95973 0.86041 0.90621 1.22504 0.99985 0.94436 1.01543 1.21700 0.99774 0.93804 0.85668 1.48200 1.65618 1.11808 1.08173 1.20492 0.76670 0.81592 0.91082 1.90684 1.52410 1.66109 1.33639 1.21682 1.03761 0.95649 0.96474 1.20335 1.04242 0.93383 0.92174 1.20902 0.93813 0.97517 0.97986 1.22891 0.96106 0.96283 0.91081 1.67768 1.32978 1.06444 1.08918 1.22930 0.87584 0.97962 1.00665 1.18836 0.87710 0.96771 0.93833 1.91535 1.61731 1.76143 1.81521 1.21633 1.01135 0.96671 0.93974 1.21925 1.00416 0.94276 0.84877 1.22564 1.00093 0.94698 1.01459 0.95362 0.94050 0.98371 0.93761 0.91954 0.92233 0.90637 0.89646 0.91795 0.88820 0.88441 0.89498 0.89074 0.81708 0.81654 0.83411 0.91288 0.90400 0.91874 0.90762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.92 8.03 59.85 0.48 4.40 16 2 N -0.60 -14.20 2.81 -173.44 -0.49 -14.69 16 3 C -0.25 -6.75 9.61 -15.06 -0.14 -6.90 16 4 H 0.07 1.76 7.81 -52.49 -0.41 1.35 16 5 C 0.00 0.01 5.06 -17.43 -0.09 -0.08 16 6 N -0.91 -26.05 10.67 55.49 0.59 -25.45 16 7 Si 0.90 21.46 29.58 -169.99 -5.03 16.43 16 8 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 9 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 11 C 0.18 3.35 2.55 -67.89 -0.17 3.18 16 12 C -0.14 -2.51 5.34 -26.61 -0.14 -2.65 16 13 C 0.11 1.64 6.43 -3.71 -0.02 1.61 16 14 N -0.61 -7.82 2.97 -172.51 -0.51 -8.33 16 15 C 0.51 6.44 7.70 -10.98 -0.08 6.36 16 16 O -0.55 -8.71 15.40 5.56 0.09 -8.62 16 17 C -0.14 -1.13 4.03 -27.88 -0.11 -1.24 16 18 C -0.06 -0.49 4.66 -27.89 -0.13 -0.62 16 19 C -0.10 -0.74 5.15 -104.50 -0.54 -1.28 16 20 C 0.09 0.74 10.86 -17.55 -0.19 0.55 16 21 N -0.45 -4.18 10.36 -13.20 -0.14 -4.32 16 22 C 0.07 0.53 11.17 -17.47 -0.20 0.34 16 23 C 0.05 0.40 7.35 -39.27 -0.29 0.11 16 24 F -0.13 -1.11 17.28 2.25 0.04 -1.07 16 25 C -0.11 -0.78 9.85 -39.21 -0.39 -1.17 16 26 C 0.11 1.23 6.37 -3.49 -0.02 1.20 16 27 C -0.15 -2.22 5.34 -26.39 -0.14 -2.36 16 28 H 0.03 0.74 7.40 -51.93 -0.38 0.36 16 29 H 0.04 1.07 7.22 -51.93 -0.37 0.70 16 30 H 0.00 -0.05 6.47 -51.93 -0.34 -0.38 16 31 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 32 H 0.06 1.18 7.85 -51.93 -0.41 0.77 16 33 H 0.06 1.11 7.72 -51.93 -0.40 0.71 16 34 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 35 H 0.09 1.30 7.01 -51.93 -0.36 0.93 16 36 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.09 0.64 7.93 -51.93 -0.41 0.22 16 38 H 0.10 0.73 7.70 -51.93 -0.40 0.33 16 39 H 0.09 0.70 8.05 -51.93 -0.42 0.29 16 40 H 0.09 0.75 8.05 -51.93 -0.42 0.33 16 41 H 0.17 1.03 8.06 -52.48 -0.42 0.60 16 42 H 0.17 0.94 8.06 -52.49 -0.42 0.51 16 43 H 0.15 0.84 8.06 -52.49 -0.42 0.41 16 44 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.08 0.68 5.93 -51.93 -0.31 0.37 16 46 H 0.06 1.00 6.72 -51.93 -0.35 0.65 16 47 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 LS Contribution 380.79 15.07 5.74 5.74 Total: -1.00 -31.69 380.79 -8.97 -40.66 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: -7.08 Total: -1.81 kcal Atomic # 6 Polarization: 3.63 SS G_CDS: -2.18 Total: 1.46 kcal Atomic # 7 Polarization: -52.24 SS G_CDS: -0.54 Total: -52.79 kcal Atomic # 8 Polarization: -8.71 SS G_CDS: 0.09 Total: -8.62 kcal Atomic # 9 Polarization: -1.11 SS G_CDS: 0.04 Total: -1.07 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.03 Total: 16.43 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -31.69 -8.97 -40.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985817208.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.823 kcal (2) G-P(sol) polarization free energy of solvation -31.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds