Wall clock time and date at job start Tue Mar 31 2020 18:25:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36943 * 120.00005 * 2 1 4 4 H 1.07999 * 119.99757 * 202.07139 * 3 2 1 5 5 C 1.38809 * 119.99738 * 22.06604 * 3 2 1 6 6 N 1.31620 * 120.00400 * 12.40501 * 5 3 2 7 7 Si 1.86802 * 119.99719 * 192.40334 * 5 3 2 8 8 H 1.48497 * 109.46901 * 90.00356 * 7 5 3 9 9 H 1.48498 * 109.47026 * 209.99981 * 7 5 3 10 10 H 1.48493 * 109.47210 * 330.00240 * 7 5 3 11 11 C 1.46504 * 120.00073 * 179.97438 * 2 1 3 12 12 H 1.09004 * 109.52109 * 180.02562 * 11 2 1 13 13 C 1.53044 * 109.49576 * 60.00481 * 11 2 1 14 14 C 1.53033 * 109.53729 * 178.68379 * 13 11 2 15 15 C 1.53188 * 109.31858 * 61.36123 * 14 13 11 16 16 N 1.46930 * 108.77546 * 305.36793 * 15 14 13 17 17 C 1.34774 * 120.63104 * 233.58450 * 16 15 14 18 18 O 1.21278 * 120.00092 * 179.97438 * 17 16 15 19 19 C 1.50705 * 119.99867 * 359.97438 * 17 16 15 20 20 C 1.53000 * 109.46752 * 180.02562 * 19 17 16 21 21 C 1.50705 * 109.46752 * 179.97438 * 20 19 17 22 22 C 1.38228 * 120.40693 * 89.99884 * 21 20 19 23 23 N 1.31844 * 120.82185 * 179.97438 * 22 21 20 24 24 C 1.31872 * 121.75002 * 359.97438 * 23 22 21 25 25 C 1.38422 * 120.72636 * 359.97438 * 24 23 22 26 26 F 1.35099 * 120.44501 * 180.02562 * 25 24 23 27 27 C 1.38589 * 120.40010 * 269.71822 * 21 20 19 28 28 C 1.46922 * 118.73898 * 53.60363 * 16 15 14 29 29 H 1.09001 * 109.46723 * 274.30758 * 1 2 3 30 30 H 1.09000 * 109.47342 * 34.30722 * 1 2 3 31 31 H 1.09002 * 109.47095 * 154.31171 * 1 2 3 32 32 H 0.96997 * 120.00263 * 179.97438 * 6 5 3 33 33 H 1.09000 * 109.45432 * 298.69915 * 13 11 2 34 34 H 1.08994 * 109.46321 * 58.67245 * 13 11 2 35 35 H 1.09003 * 109.49629 * 181.31636 * 14 13 11 36 36 H 1.09001 * 109.49491 * 301.37521 * 14 13 11 37 37 H 1.09009 * 109.58598 * 65.15038 * 15 14 13 38 38 H 1.08997 * 109.59440 * 185.57671 * 15 14 13 39 39 H 1.08999 * 109.46841 * 299.99658 * 19 17 16 40 40 H 1.08995 * 109.47231 * 60.00128 * 19 17 16 41 41 H 1.08999 * 109.46989 * 299.99349 * 20 19 17 42 42 H 1.08995 * 109.47326 * 59.99968 * 20 19 17 43 43 H 1.08000 * 119.59256 * 359.97438 * 22 21 20 44 44 H 1.08001 * 119.63874 * 180.02562 * 24 23 22 45 45 H 1.07992 * 120.80435 * 359.97438 * 27 21 20 46 46 H 1.09001 * 109.59116 * 186.60626 * 28 16 15 47 47 H 1.08998 * 109.59005 * 66.18226 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1703 1.2202 -0.3515 5 6 1.5318 2.3440 0.4516 6 7 0.3898 2.2701 1.1018 7 14 2.3213 4.0075 0.1367 8 1 1.8346 4.5492 -1.1575 9 1 1.9594 4.9425 1.2321 10 1 3.7973 3.8531 0.0850 11 6 2.1975 -1.2687 0.0006 12 1 3.2694 -1.0705 0.0009 13 6 1.8283 -2.0723 -1.2485 14 6 2.6176 -3.3832 -1.2656 15 6 2.2497 -4.2123 -0.0311 16 7 2.4654 -3.3937 1.1698 17 6 3.2358 -3.8451 2.1793 18 8 3.4065 -3.1596 3.1651 19 6 3.8853 -5.2016 2.0831 20 6 4.6978 -5.4691 3.3516 21 6 5.3467 -6.8259 3.2556 22 6 6.6058 -6.9616 2.7017 23 7 7.1814 -8.1446 2.6141 24 6 6.5871 -9.2392 3.0473 25 6 5.3260 -9.1819 3.6150 26 9 4.7226 -10.3068 4.0574 27 6 4.6906 -7.9520 3.7270 28 6 1.8248 -2.0739 1.2494 29 1 -0.3633 0.0772 1.0248 30 1 -0.3634 0.8489 -0.5792 31 1 -0.3633 -0.9261 -0.4455 32 1 -0.0417 3.0793 1.4177 33 1 0.7606 -2.2914 -1.2368 34 1 2.0700 -1.4914 -2.1386 35 1 2.3716 -3.9443 -2.1672 36 1 3.6855 -3.1651 -1.2529 37 1 1.2021 -4.5080 -0.0884 38 1 2.8802 -5.1003 0.0139 39 1 3.1156 -5.9662 1.9770 40 1 4.5453 -5.2278 1.2161 41 1 5.4674 -4.7046 3.4580 42 1 4.0374 -5.4431 4.2183 43 1 7.1247 -6.0878 2.3361 44 1 7.0903 -10.1907 2.9590 45 1 3.7083 -7.8753 4.1690 46 1 2.1750 -1.5508 2.1393 47 1 0.7427 -2.1951 1.2965 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027704590.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:59 Heat of formation + Delta-G solvation = -27.437879 kcal Electronic energy + Delta-G solvation = -28559.465050 eV Core-core repulsion = 24464.194309 eV Total energy + Delta-G solvation = -4095.270740 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.175 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -49.38191 -40.65264 -39.92613 -37.56857 -35.11438 -34.93942 -32.44331 -32.03725 -31.31715 -30.44809 -28.73473 -26.11075 -25.98429 -24.57121 -24.12055 -23.41323 -22.00234 -21.65852 -19.50765 -18.57112 -17.84687 -17.74034 -17.30014 -16.88821 -16.70231 -16.22028 -15.65895 -15.57734 -14.96809 -14.37298 -14.24070 -14.15553 -13.99539 -13.79993 -13.71341 -13.50674 -13.39273 -13.17329 -12.67995 -12.59394 -12.38752 -12.32025 -12.27082 -11.86656 -11.34638 -11.18774 -11.03529 -10.81938 -10.65882 -10.42397 -10.36024 -10.19554 -10.18303 -10.03124 -9.87913 -9.77580 -9.58242 -9.26587 -8.60024 -8.34222 -6.78102 -5.73350 -3.19445 0.46480 0.63502 2.77694 3.08495 3.24725 3.38853 3.44902 3.46385 3.56960 3.99664 4.18286 4.30155 4.45395 4.48095 4.57287 4.71134 4.78173 4.89388 5.02293 5.09739 5.21420 5.26743 5.33460 5.36855 5.42657 5.47876 5.50601 5.56981 5.72986 5.83100 5.85055 5.88911 5.97340 6.09676 6.19119 6.20623 6.34981 6.47345 6.64906 6.75542 6.90927 6.95989 7.37191 7.37896 7.64079 7.70670 7.80471 8.34327 8.39880 9.22317 9.84834 10.32939 11.31434 Molecular weight = 335.18amu Principal moments of inertia in cm(-1) A = 0.021978 B = 0.002167 C = 0.002115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.703323 B =12919.563767 C =13234.109400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.592 5.592 3 C -0.255 4.255 4 H 0.069 0.931 5 C 0.002 3.998 6 N -0.907 5.907 7 Si 0.906 3.094 8 H -0.288 1.288 9 H -0.291 1.291 10 H -0.279 1.279 11 C 0.169 3.831 12 H 0.064 0.936 13 C -0.134 4.134 14 C -0.131 4.131 15 C 0.107 3.893 16 N -0.607 5.607 17 C 0.509 3.491 18 O -0.541 6.541 19 C -0.134 4.134 20 C -0.065 4.065 21 C -0.098 4.098 22 C 0.093 3.907 23 N -0.455 5.455 24 C 0.066 3.934 25 C 0.050 3.950 26 F -0.131 7.131 27 C -0.108 4.108 28 C 0.098 3.902 29 H 0.028 0.972 30 H 0.044 0.956 31 H -0.001 1.001 32 H 0.253 0.747 33 H 0.059 0.941 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.078 0.922 39 H 0.092 0.908 40 H 0.095 0.905 41 H 0.092 0.908 42 H 0.087 0.913 43 H 0.166 0.834 44 H 0.166 0.834 45 H 0.148 0.852 46 H 0.091 0.909 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.264 -23.375 0.165 24.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.314 5.314 3 C -0.385 4.385 4 H 0.087 0.913 5 C -0.196 4.196 6 N -0.551 5.551 7 Si 0.736 3.264 8 H -0.215 1.215 9 H -0.217 1.217 10 H -0.205 1.205 11 C 0.060 3.940 12 H 0.082 0.918 13 C -0.174 4.174 14 C -0.170 4.170 15 C -0.016 4.016 16 N -0.340 5.340 17 C 0.296 3.704 18 O -0.419 6.419 19 C -0.174 4.174 20 C -0.103 4.103 21 C -0.100 4.100 22 C -0.064 4.064 23 N -0.162 5.162 24 C -0.093 4.093 25 C 0.029 3.971 26 F -0.109 7.109 27 C -0.134 4.134 28 C -0.026 4.026 29 H 0.047 0.953 30 H 0.063 0.937 31 H 0.017 0.983 32 H 0.063 0.937 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.096 0.904 39 H 0.110 0.890 40 H 0.113 0.887 41 H 0.110 0.890 42 H 0.106 0.894 43 H 0.183 0.817 44 H 0.183 0.817 45 H 0.166 0.834 46 H 0.110 0.890 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 8.041 -22.930 0.406 24.303 hybrid contribution -0.793 0.716 0.276 1.104 sum 7.248 -22.214 0.682 23.376 Atomic orbital electron populations 1.20794 0.82557 0.95612 0.99310 1.43952 1.01878 1.00047 1.85515 1.19229 0.97869 0.85123 1.36254 0.91347 1.25033 0.97797 0.98563 0.98218 1.70068 1.18337 1.27095 1.39650 0.86223 0.78801 0.83996 0.77332 1.21515 1.21722 1.20484 1.20622 0.96442 0.86209 0.90757 0.91774 1.22093 0.99647 0.94973 1.00645 1.21903 1.01064 0.97308 0.96737 1.21743 1.01308 0.93530 0.85019 1.48321 1.49024 1.19172 1.17507 1.20495 0.78976 0.88051 0.82844 1.90723 1.61473 1.58619 1.31054 1.21677 1.00400 0.95724 0.99622 1.20355 0.99998 0.91681 0.98278 1.20925 0.95506 0.96140 0.97454 1.22885 0.92200 0.95517 0.95847 1.67766 1.34990 0.98459 1.14953 1.22915 0.91185 0.98656 0.96509 1.18836 0.94044 0.83173 1.01093 1.91534 1.83053 1.49243 1.87121 1.21650 1.01377 0.90656 0.99752 1.22545 0.96679 0.80966 1.02391 0.95332 0.93689 0.98293 0.93704 0.92267 0.91691 0.91265 0.91709 0.91509 0.90376 0.89010 0.88679 0.88987 0.89412 0.81706 0.81693 0.83382 0.89040 0.92152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.88 7.91 59.85 0.47 4.35 16 2 N -0.59 -14.49 2.82 -173.34 -0.49 -14.98 16 3 C -0.26 -6.96 9.60 -15.06 -0.14 -7.10 16 4 H 0.07 1.84 7.81 -52.49 -0.41 1.43 16 5 C 0.00 0.07 5.11 -17.43 -0.09 -0.02 16 6 N -0.91 -26.37 10.63 55.49 0.59 -25.78 16 7 Si 0.91 21.93 29.57 -169.99 -5.03 16.90 16 8 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 9 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 C 0.17 3.34 2.74 -67.81 -0.19 3.16 16 12 H 0.06 1.35 7.86 -51.93 -0.41 0.94 16 13 C -0.13 -2.11 5.13 -26.69 -0.14 -2.25 16 14 C -0.13 -1.52 6.08 -26.62 -0.16 -1.68 16 15 C 0.11 1.14 6.34 -3.71 -0.02 1.12 16 16 N -0.61 -8.78 2.97 -172.77 -0.51 -9.30 16 17 C 0.51 7.25 7.70 -10.98 -0.08 7.17 16 18 O -0.54 -10.07 15.39 5.56 0.09 -9.99 16 19 C -0.13 -1.20 4.03 -27.88 -0.11 -1.32 16 20 C -0.06 -0.56 4.66 -27.88 -0.13 -0.69 16 21 C -0.10 -0.77 5.15 -104.49 -0.54 -1.30 16 22 C 0.09 0.75 10.86 -17.55 -0.19 0.56 16 23 N -0.45 -4.19 10.36 -13.20 -0.14 -4.32 16 24 C 0.07 0.52 11.17 -17.47 -0.20 0.33 16 25 C 0.05 0.41 7.35 -39.27 -0.29 0.12 16 26 F -0.13 -1.13 17.28 2.25 0.04 -1.09 16 27 C -0.11 -0.82 9.85 -39.21 -0.39 -1.21 16 28 C 0.10 1.83 5.79 -3.71 -0.02 1.81 16 29 H 0.03 0.75 7.41 -51.93 -0.39 0.36 16 30 H 0.04 1.17 7.20 -51.93 -0.37 0.80 16 31 H 0.00 -0.03 6.46 -51.93 -0.34 -0.36 16 32 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 33 H 0.06 0.94 6.71 -51.93 -0.35 0.59 16 34 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.07 0.67 8.14 -51.92 -0.42 0.25 16 38 H 0.08 0.60 5.93 -51.93 -0.31 0.29 16 39 H 0.09 0.67 7.94 -51.93 -0.41 0.26 16 40 H 0.09 0.70 7.69 -51.93 -0.40 0.30 16 41 H 0.09 0.85 8.05 -51.93 -0.42 0.44 16 42 H 0.09 0.82 8.05 -51.93 -0.42 0.40 16 43 H 0.17 1.04 8.06 -52.49 -0.42 0.62 16 44 H 0.17 0.93 8.06 -52.49 -0.42 0.51 16 45 H 0.15 0.92 8.06 -52.49 -0.42 0.50 16 46 H 0.09 2.05 7.01 -51.93 -0.36 1.68 16 47 H 0.06 1.15 7.51 -51.93 -0.39 0.76 16 LS Contribution 380.51 15.07 5.73 5.73 Total: -1.00 -32.47 380.51 -9.00 -41.47 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -7.07 Total: -1.68 kcal Atomic # 6 Polarization: 5.25 SS G_CDS: -2.22 Total: 3.03 kcal Atomic # 7 Polarization: -53.83 SS G_CDS: -0.55 Total: -54.38 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: 0.09 Total: -9.99 kcal Atomic # 9 Polarization: -1.13 SS G_CDS: 0.04 Total: -1.09 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.03 Total: 16.90 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.47 -9.00 -41.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027704590.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.033 kcal (2) G-P(sol) polarization free energy of solvation -32.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds