Wall clock time and date at job start Tue Mar 31 2020 18:25:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36943 * 120.00005 * 2 1 4 4 H 1.07999 * 119.99757 * 202.07139 * 3 2 1 5 5 C 1.38809 * 119.99738 * 22.06604 * 3 2 1 6 6 N 1.31620 * 120.00400 * 12.40501 * 5 3 2 7 7 Si 1.86802 * 119.99719 * 192.40334 * 5 3 2 8 8 H 1.48497 * 109.46901 * 90.00356 * 7 5 3 9 9 H 1.48498 * 109.47026 * 209.99981 * 7 5 3 10 10 H 1.48493 * 109.47210 * 330.00240 * 7 5 3 11 11 C 1.46504 * 120.00073 * 179.97438 * 2 1 3 12 12 H 1.09004 * 109.52109 * 180.02562 * 11 2 1 13 13 C 1.53044 * 109.49576 * 60.00481 * 11 2 1 14 14 C 1.53033 * 109.53729 * 178.68379 * 13 11 2 15 15 C 1.53188 * 109.31858 * 61.36123 * 14 13 11 16 16 N 1.46930 * 108.77546 * 305.36793 * 15 14 13 17 17 C 1.34774 * 120.63104 * 233.58450 * 16 15 14 18 18 O 1.21278 * 120.00092 * 179.97438 * 17 16 15 19 19 C 1.50705 * 119.99867 * 359.97438 * 17 16 15 20 20 C 1.53000 * 109.46752 * 180.02562 * 19 17 16 21 21 C 1.50705 * 109.46752 * 179.97438 * 20 19 17 22 22 C 1.38228 * 120.40693 * 89.99884 * 21 20 19 23 23 N 1.31844 * 120.82185 * 179.97438 * 22 21 20 24 24 C 1.31872 * 121.75002 * 359.97438 * 23 22 21 25 25 C 1.38422 * 120.72636 * 359.97438 * 24 23 22 26 26 F 1.35099 * 120.44501 * 180.02562 * 25 24 23 27 27 C 1.38589 * 120.40010 * 269.71822 * 21 20 19 28 28 C 1.46922 * 118.73898 * 53.60363 * 16 15 14 29 29 H 1.09001 * 109.46723 * 274.30758 * 1 2 3 30 30 H 1.09000 * 109.47342 * 34.30722 * 1 2 3 31 31 H 1.09002 * 109.47095 * 154.31171 * 1 2 3 32 32 H 0.96997 * 120.00263 * 179.97438 * 6 5 3 33 33 H 1.09000 * 109.45432 * 298.69915 * 13 11 2 34 34 H 1.08994 * 109.46321 * 58.67245 * 13 11 2 35 35 H 1.09003 * 109.49629 * 181.31636 * 14 13 11 36 36 H 1.09001 * 109.49491 * 301.37521 * 14 13 11 37 37 H 1.09009 * 109.58598 * 65.15038 * 15 14 13 38 38 H 1.08997 * 109.59440 * 185.57671 * 15 14 13 39 39 H 1.08999 * 109.46841 * 299.99658 * 19 17 16 40 40 H 1.08995 * 109.47231 * 60.00128 * 19 17 16 41 41 H 1.08999 * 109.46989 * 299.99349 * 20 19 17 42 42 H 1.08995 * 109.47326 * 59.99968 * 20 19 17 43 43 H 1.08000 * 119.59256 * 359.97438 * 22 21 20 44 44 H 1.08001 * 119.63874 * 180.02562 * 24 23 22 45 45 H 1.07992 * 120.80435 * 359.97438 * 27 21 20 46 46 H 1.09001 * 109.59116 * 186.60626 * 28 16 15 47 47 H 1.08998 * 109.59005 * 66.18226 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1703 1.2202 -0.3515 5 6 1.5318 2.3440 0.4516 6 7 0.3898 2.2701 1.1018 7 14 2.3213 4.0075 0.1367 8 1 1.8346 4.5492 -1.1575 9 1 1.9594 4.9425 1.2321 10 1 3.7973 3.8531 0.0850 11 6 2.1975 -1.2687 0.0006 12 1 3.2694 -1.0705 0.0009 13 6 1.8283 -2.0723 -1.2485 14 6 2.6176 -3.3832 -1.2656 15 6 2.2497 -4.2123 -0.0311 16 7 2.4654 -3.3937 1.1698 17 6 3.2358 -3.8451 2.1793 18 8 3.4065 -3.1596 3.1651 19 6 3.8853 -5.2016 2.0831 20 6 4.6978 -5.4691 3.3516 21 6 5.3467 -6.8259 3.2556 22 6 6.6058 -6.9616 2.7017 23 7 7.1814 -8.1446 2.6141 24 6 6.5871 -9.2392 3.0473 25 6 5.3260 -9.1819 3.6150 26 9 4.7226 -10.3068 4.0574 27 6 4.6906 -7.9520 3.7270 28 6 1.8248 -2.0739 1.2494 29 1 -0.3633 0.0772 1.0248 30 1 -0.3634 0.8489 -0.5792 31 1 -0.3633 -0.9261 -0.4455 32 1 -0.0417 3.0793 1.4177 33 1 0.7606 -2.2914 -1.2368 34 1 2.0700 -1.4914 -2.1386 35 1 2.3716 -3.9443 -2.1672 36 1 3.6855 -3.1651 -1.2529 37 1 1.2021 -4.5080 -0.0884 38 1 2.8802 -5.1003 0.0139 39 1 3.1156 -5.9662 1.9770 40 1 4.5453 -5.2278 1.2161 41 1 5.4674 -4.7046 3.4580 42 1 4.0374 -5.4431 4.2183 43 1 7.1247 -6.0878 2.3361 44 1 7.0903 -10.1907 2.9590 45 1 3.7083 -7.8753 4.1690 46 1 2.1750 -1.5508 2.1393 47 1 0.7427 -2.1951 1.2965 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027704590.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:58 Heat of formation + Delta-G solvation = -46.721415 kcal Electronic energy + Delta-G solvation = -28560.301246 eV Core-core repulsion = 24464.194309 eV Total energy + Delta-G solvation = -4096.106937 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.175 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.99527 -41.42211 -40.94540 -38.95087 -36.76007 -35.67638 -33.97877 -32.79859 -32.68557 -31.36373 -30.16625 -28.06697 -27.02652 -25.67671 -24.99321 -24.66767 -23.03372 -22.70396 -20.91860 -19.77415 -18.80365 -18.52758 -18.36772 -17.98005 -17.66712 -17.02428 -16.89804 -16.69938 -16.53669 -15.71794 -15.40118 -15.22852 -14.99937 -14.92512 -14.54091 -14.49408 -14.38527 -14.20689 -14.02410 -13.85023 -13.65173 -13.45289 -13.21138 -12.97854 -12.87313 -12.81767 -12.47800 -12.20977 -12.12923 -12.07897 -12.01091 -11.72380 -11.62812 -11.37533 -10.88249 -10.69943 -10.65575 -10.60649 -9.88596 -9.65026 -8.77617 -7.84892 -5.33073 -0.12153 0.04834 1.44337 1.45058 1.54160 1.67990 2.03061 2.49522 2.59247 2.97328 3.28482 3.37135 3.53963 3.62925 3.73839 3.79654 3.88667 3.99919 4.06220 4.07558 4.14219 4.18999 4.29423 4.39432 4.41564 4.56423 4.65463 4.68883 4.75588 4.80880 4.82475 4.90667 4.93025 4.96690 5.07194 5.16540 5.19239 5.21142 5.26657 5.44143 5.52696 5.57766 5.61607 5.62974 5.70989 6.30956 6.53201 6.79635 7.13051 7.24081 7.85439 8.27475 9.17866 Molecular weight = 335.18amu Principal moments of inertia in cm(-1) A = 0.021978 B = 0.002167 C = 0.002115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.703323 B =12919.563767 C =13234.109400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.180 3.820 2 N -0.610 5.610 3 C -0.263 4.263 4 H 0.067 0.933 5 C -0.055 4.055 6 N -0.938 5.938 7 Si 0.970 3.030 8 H -0.282 1.282 9 H -0.296 1.296 10 H -0.271 1.271 11 C 0.167 3.833 12 H 0.045 0.955 13 C -0.124 4.124 14 C -0.123 4.123 15 C 0.103 3.897 16 N -0.608 5.608 17 C 0.502 3.498 18 O -0.595 6.595 19 C -0.121 4.121 20 C -0.058 4.058 21 C -0.095 4.095 22 C 0.091 3.909 23 N -0.476 5.476 24 C 0.065 3.935 25 C 0.041 3.959 26 F -0.135 7.135 27 C -0.106 4.106 28 C 0.114 3.886 29 H -0.002 1.002 30 H 0.017 0.983 31 H 0.035 0.965 32 H 0.248 0.752 33 H 0.061 0.939 34 H 0.054 0.946 35 H 0.106 0.894 36 H 0.065 0.935 37 H 0.081 0.919 38 H 0.122 0.878 39 H 0.121 0.879 40 H 0.123 0.877 41 H 0.081 0.919 42 H 0.077 0.923 43 H 0.179 0.821 44 H 0.184 0.816 45 H 0.161 0.839 46 H 0.043 0.957 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.213 -26.241 -1.536 27.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.333 5.333 3 C -0.393 4.393 4 H 0.085 0.915 5 C -0.250 4.250 6 N -0.585 5.585 7 Si 0.798 3.202 8 H -0.209 1.209 9 H -0.222 1.222 10 H -0.195 1.195 11 C 0.059 3.941 12 H 0.063 0.937 13 C -0.163 4.163 14 C -0.162 4.162 15 C -0.018 4.018 16 N -0.341 5.341 17 C 0.292 3.708 18 O -0.476 6.476 19 C -0.160 4.160 20 C -0.097 4.097 21 C -0.097 4.097 22 C -0.066 4.066 23 N -0.183 5.183 24 C -0.093 4.093 25 C 0.020 3.980 26 F -0.114 7.114 27 C -0.132 4.132 28 C -0.011 4.011 29 H 0.016 0.984 30 H 0.036 0.964 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.124 0.876 36 H 0.083 0.917 37 H 0.099 0.901 38 H 0.140 0.860 39 H 0.139 0.861 40 H 0.141 0.859 41 H 0.100 0.900 42 H 0.096 0.904 43 H 0.196 0.804 44 H 0.201 0.799 45 H 0.179 0.821 46 H 0.061 0.939 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 9.015 -25.864 -1.336 27.422 hybrid contribution -1.047 1.532 0.826 2.032 sum 7.968 -24.331 -0.509 25.608 Atomic orbital electron populations 1.20482 0.82594 0.96142 0.97225 1.44189 1.02188 1.01127 1.85802 1.19536 0.97928 0.86581 1.35289 0.91476 1.25806 0.98605 1.01917 0.98636 1.70238 1.19733 1.27434 1.41083 0.85227 0.78303 0.79745 0.76946 1.20889 1.22249 1.19548 1.20791 0.94828 0.85164 0.93305 0.93703 1.21935 1.00533 0.96560 0.97321 1.21892 1.00249 0.95155 0.98884 1.22113 1.03357 0.93930 0.82450 1.48376 1.48641 1.17735 1.19309 1.21507 0.78076 0.89529 0.81656 1.90706 1.63148 1.60558 1.33212 1.21702 1.01177 0.92392 1.00727 1.20224 0.99558 0.91961 0.97952 1.20719 0.95466 0.95465 0.98007 1.23149 0.92282 0.95760 0.95424 1.67818 1.35563 0.99017 1.15924 1.23230 0.91187 0.99174 0.95706 1.18899 0.94283 0.83210 1.01603 1.91524 1.83139 1.49495 1.87255 1.21826 1.01903 0.90379 0.99097 1.21913 0.96338 0.83277 0.99589 0.98411 0.96432 0.94640 0.94278 0.92009 0.92731 0.87552 0.91671 0.90052 0.86025 0.86073 0.85925 0.90003 0.90421 0.80352 0.79920 0.82089 0.93863 0.92696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.91 7.91 127.77 1.01 9.92 16 2 N -0.61 -30.76 2.82 -702.33 -1.98 -32.73 16 3 C -0.26 -14.77 9.60 84.03 0.81 -13.97 16 4 H 0.07 3.69 7.81 -2.91 -0.02 3.67 16 5 C -0.05 -3.13 5.11 84.86 0.43 -2.70 16 6 N -0.94 -56.76 10.63 21.65 0.23 -56.53 16 7 Si 0.97 46.16 29.57 68.60 2.03 48.19 16 8 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 9 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 10 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 11 C 0.17 6.67 2.74 45.07 0.12 6.79 16 12 H 0.04 1.93 7.86 -2.38 -0.02 1.91 16 13 C -0.12 -3.68 5.13 30.62 0.16 -3.52 16 14 C -0.12 -2.33 6.08 30.67 0.19 -2.15 16 15 C 0.10 1.72 6.34 86.36 0.55 2.27 16 16 N -0.61 -16.62 2.97 -818.91 -2.43 -19.05 16 17 C 0.50 13.68 7.70 87.66 0.67 14.35 16 18 O -0.60 -22.76 15.39 -3.02 -0.05 -22.81 16 19 C -0.12 -1.74 4.03 29.85 0.12 -1.62 16 20 C -0.06 -0.90 4.66 29.85 0.14 -0.76 16 21 C -0.09 -1.23 5.15 -19.78 -0.10 -1.34 16 22 C 0.09 1.25 10.86 84.69 0.92 2.17 16 23 N -0.48 -7.72 10.36 -195.67 -2.03 -9.75 16 24 C 0.06 0.90 11.17 84.73 0.95 1.84 16 25 C 0.04 0.58 7.35 22.47 0.17 0.75 16 26 F -0.14 -2.08 17.28 44.97 0.78 -1.31 16 27 C -0.11 -1.35 9.85 22.51 0.22 -1.13 16 28 C 0.11 4.37 5.79 86.36 0.50 4.87 16 29 H 0.00 -0.13 7.41 -2.39 -0.02 -0.15 16 30 H 0.02 0.92 7.20 -2.39 -0.02 0.91 16 31 H 0.04 1.45 6.46 -2.39 -0.02 1.44 16 32 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 33 H 0.06 1.80 6.71 -2.39 -0.02 1.79 16 34 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 38 H 0.12 1.08 5.93 -2.39 -0.01 1.06 16 39 H 0.12 1.13 7.94 -2.39 -0.02 1.12 16 40 H 0.12 1.19 7.69 -2.39 -0.02 1.17 16 41 H 0.08 1.44 8.05 -2.39 -0.02 1.42 16 42 H 0.08 1.37 8.05 -2.39 -0.02 1.35 16 43 H 0.18 1.82 8.06 -2.91 -0.02 1.80 16 44 H 0.18 1.67 8.06 -2.91 -0.02 1.64 16 45 H 0.16 1.57 8.06 -2.91 -0.02 1.55 16 46 H 0.04 2.06 7.01 -2.39 -0.02 2.04 16 47 H 0.05 2.13 7.51 -2.39 -0.02 2.11 16 Total: -1.00 -75.94 380.51 4.37 -71.57 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: 0.97 Total: 6.64 kcal Atomic # 6 Polarization: 8.94 SS G_CDS: 6.85 Total: 15.79 kcal Atomic # 7 Polarization: -111.86 SS G_CDS: -6.21 Total: -118.07 kcal Atomic # 8 Polarization: -22.76 SS G_CDS: -0.05 Total: -22.81 kcal Atomic # 9 Polarization: -2.08 SS G_CDS: 0.78 Total: -1.31 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.19 kcal Total: -75.94 4.37 -71.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027704590.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.848 kcal (2) G-P(sol) polarization free energy of solvation -75.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds