Wall clock time and date at job start Tue Mar 31 2020 18:29:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42900 * 113.99515 * 2 1 4 4 C 1.53001 * 109.46719 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.47223 * 180.02562 * 4 3 2 6 6 C 1.34811 * 126.59704 * 125.27389 * 5 4 3 7 7 C 1.36602 * 106.83920 * 180.10937 * 6 5 4 8 8 C 1.47521 * 125.76736 * 179.89722 * 7 6 5 9 9 O 1.21589 * 120.00296 * 6.36810 * 8 7 6 10 10 N 1.34777 * 119.99293 * 186.36680 * 8 7 6 11 11 C 1.47159 * 120.71589 * 6.64341 * 10 8 7 12 12 C 1.53883 * 108.03278 * 132.74821 * 11 10 8 13 13 H 1.08994 * 112.57812 * 182.22931 * 12 11 10 14 14 C 1.54135 * 107.70980 * 306.32726 * 12 11 10 15 15 C 1.54275 * 104.89204 * 89.40899 * 14 12 11 16 16 C 1.54543 * 104.84728 * 359.81043 * 15 14 12 17 17 H 1.09008 * 112.18399 * 146.41174 * 16 15 14 18 18 C 1.49252 * 120.76388 * 186.71880 * 10 8 7 19 19 N 1.48307 * 104.36024 * 24.70121 * 16 15 14 20 20 C 1.36937 * 128.07901 * 139.07794 * 19 16 15 21 21 H 1.07995 * 120.00077 * 343.14537 * 20 19 16 22 22 C 1.38811 * 119.99952 * 163.14575 * 20 19 16 23 23 N 1.31620 * 120.00220 * 351.96223 * 22 20 19 24 24 Si 1.86803 * 119.99953 * 171.96813 * 22 20 19 25 25 H 1.48505 * 109.47019 * 179.97438 * 24 22 20 26 26 H 1.48500 * 109.46829 * 299.99544 * 24 22 20 27 27 H 1.48494 * 109.47124 * 59.99917 * 24 22 20 28 28 N 1.34404 * 108.45742 * 359.62728 * 7 6 5 29 29 N 1.28764 * 109.52364 * 0.23323 * 28 7 6 30 30 H 1.09002 * 109.46849 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46927 * 299.99850 * 1 2 3 32 32 H 1.09003 * 109.47210 * 59.99863 * 1 2 3 33 33 H 1.08994 * 109.47261 * 60.00539 * 3 2 1 34 34 H 1.09002 * 109.47219 * 299.99676 * 3 2 1 35 35 H 1.08998 * 109.47604 * 59.99594 * 4 3 2 36 36 H 1.09003 * 109.47072 * 300.00076 * 4 3 2 37 37 H 1.08004 * 126.57984 * 359.96346 * 6 5 4 38 38 H 1.09004 * 109.74994 * 13.11385 * 11 10 8 39 39 H 1.09001 * 109.74861 * 252.38156 * 11 10 8 40 40 H 1.09004 * 110.50731 * 330.46960 * 14 12 11 41 41 H 1.08999 * 110.27576 * 208.23812 * 14 12 11 42 42 H 1.08999 * 110.36383 * 240.96563 * 15 14 12 43 43 H 1.09000 * 110.35973 * 118.65188 * 15 14 12 44 44 H 1.08996 * 110.51616 * 107.82844 * 18 10 8 45 45 H 1.08997 * 109.74794 * 346.60370 * 18 10 8 46 46 H 0.96997 * 120.00449 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 4.1313 2.5231 0.0000 6 6 5.0295 3.0025 0.8836 7 6 5.3068 4.2865 0.5087 8 6 6.2400 5.2020 1.1924 9 8 6.9268 4.7962 2.1101 10 7 6.3311 6.4880 0.7998 11 6 5.4079 7.0335 -0.2080 12 6 4.8755 8.3801 0.3129 13 1 4.1506 8.8333 -0.3633 14 6 4.2876 8.1401 1.7173 15 6 5.4704 8.3548 2.6843 16 6 6.6693 8.7010 1.7726 17 1 7.3541 9.4065 2.2434 18 6 7.3712 7.3903 1.3758 19 7 6.0496 9.2559 0.5448 20 6 6.4618 10.3300 -0.1979 21 1 7.1567 11.0421 0.2219 22 6 5.9863 10.5035 -1.4904 23 7 5.2673 9.5593 -2.0595 24 14 6.3670 12.0772 -2.4223 25 1 5.7499 12.0150 -3.7716 26 1 5.8161 13.2384 -1.6785 27 1 7.8379 12.2287 -2.5578 28 7 4.5902 4.5727 -0.5918 29 7 3.8814 3.5497 -0.9218 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.6886 1.8464 0.8900 34 1 1.6885 1.8464 -0.8900 35 1 3.8568 0.6439 -0.8908 36 1 3.8574 0.6436 0.8891 37 1 5.4477 2.4738 1.7274 38 1 4.5781 6.3431 -0.3594 39 1 5.9374 7.1858 -1.1485 40 1 3.9073 7.1222 1.8033 41 1 3.4944 8.8590 1.9227 42 1 5.6717 7.4425 3.2457 43 1 5.2596 9.1806 3.3638 44 1 8.1480 7.5967 0.6397 45 1 7.8127 6.9271 2.2582 46 1 4.9347 9.6807 -2.9626 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029300505.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:21 Heat of formation + Delta-G solvation = 77.235103 kcal Electronic energy + Delta-G solvation = -29911.161181 eV Core-core repulsion = 25840.349364 eV Total energy + Delta-G solvation = -4070.811818 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.18953 -39.65184 -38.48683 -37.60655 -35.10831 -33.51614 -32.36353 -31.16046 -30.67062 -29.75425 -29.15290 -26.92213 -26.20578 -24.40485 -24.07781 -23.52868 -22.58882 -21.80895 -19.92801 -19.53599 -18.70241 -17.79858 -17.01343 -16.78470 -16.15639 -16.00145 -15.78389 -15.38033 -15.30370 -14.94339 -14.62148 -14.34080 -14.06988 -13.69173 -13.39952 -13.10658 -12.90452 -12.71825 -12.59360 -12.36577 -11.99454 -11.85203 -11.70511 -11.59834 -11.58659 -11.20074 -10.86657 -10.72454 -10.61352 -10.38825 -10.26888 -10.21819 -9.96824 -9.73414 -9.57364 -9.48037 -9.40800 -9.19561 -8.62923 -7.96051 -6.73277 -5.76796 -3.12868 1.13435 1.80991 1.93567 3.27550 3.40521 3.45602 3.46328 3.53436 3.68317 4.13400 4.33284 4.37881 4.47944 4.68722 4.79341 4.86792 4.88575 4.98973 5.07056 5.14845 5.22318 5.28141 5.39885 5.41046 5.68694 5.78324 5.81030 5.87635 6.07743 6.18761 6.25650 6.32821 6.46055 6.48006 6.53481 6.62535 6.72337 6.82210 6.88979 6.98344 7.18900 7.44148 7.54991 7.74326 7.99591 8.19108 8.22633 8.66741 9.12932 9.74777 10.53195 11.36116 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016011 B = 0.003028 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.343379 B = 9243.348923 C =10115.649463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.390 6.390 3 C 0.049 3.951 4 C 0.128 3.872 5 N -0.367 5.367 6 C 0.088 3.912 7 C -0.085 4.085 8 C 0.590 3.410 9 O -0.567 6.567 10 N -0.575 5.575 11 C 0.093 3.907 12 C 0.169 3.831 13 H 0.115 0.885 14 C -0.135 4.135 15 C -0.123 4.123 16 C 0.134 3.866 17 H 0.077 0.923 18 C 0.104 3.896 19 N -0.585 5.585 20 C -0.228 4.228 21 H 0.074 0.926 22 C -0.001 4.001 23 N -0.910 5.910 24 Si 0.911 3.089 25 H -0.291 1.291 26 H -0.286 1.286 27 H -0.285 1.285 28 N -0.184 5.184 29 N -0.072 5.072 30 H 0.090 0.910 31 H 0.044 0.956 32 H 0.046 0.954 33 H 0.059 0.941 34 H 0.071 0.929 35 H 0.106 0.894 36 H 0.112 0.888 37 H 0.203 0.797 38 H 0.098 0.902 39 H 0.082 0.918 40 H 0.047 0.953 41 H 0.051 0.949 42 H 0.055 0.945 43 H 0.053 0.947 44 H 0.068 0.932 45 H 0.076 0.924 46 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.970 -17.619 6.238 19.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.308 6.308 3 C -0.028 4.028 4 C 0.006 3.994 5 N -0.154 5.154 6 C -0.068 4.068 7 C -0.224 4.224 8 C 0.375 3.625 9 O -0.447 6.447 10 N -0.305 5.305 11 C -0.031 4.031 12 C 0.062 3.938 13 H 0.133 0.867 14 C -0.174 4.174 15 C -0.162 4.162 16 C 0.025 3.975 17 H 0.095 0.905 18 C -0.019 4.019 19 N -0.306 5.306 20 C -0.356 4.356 21 H 0.092 0.908 22 C -0.199 4.199 23 N -0.555 5.555 24 Si 0.741 3.259 25 H -0.216 1.216 26 H -0.213 1.213 27 H -0.212 1.212 28 N -0.058 5.058 29 N -0.052 5.052 30 H 0.109 0.891 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.077 0.923 34 H 0.089 0.911 35 H 0.124 0.876 36 H 0.130 0.870 37 H 0.220 0.780 38 H 0.115 0.885 39 H 0.100 0.900 40 H 0.066 0.934 41 H 0.070 0.930 42 H 0.074 0.926 43 H 0.072 0.928 44 H 0.086 0.914 45 H 0.094 0.906 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -7.335 -17.469 5.176 19.641 hybrid contribution 0.438 0.532 0.196 0.716 sum -6.898 -16.937 5.372 19.061 Atomic orbital electron populations 1.22801 0.79727 1.03157 1.00598 1.87768 1.20751 1.26650 1.95653 1.22641 0.92009 0.85617 1.02562 1.21613 0.93084 0.78411 1.06295 1.50282 1.30720 1.13467 1.20896 1.23302 0.92538 0.95019 0.95908 1.21662 1.06697 0.95234 0.98781 1.16819 0.81464 0.81643 0.82551 1.90721 1.46833 1.76846 1.30334 1.48613 1.32855 1.08269 1.40721 1.23150 0.92780 0.96667 0.90509 1.21768 0.90513 0.88886 0.92675 0.86712 1.22566 0.97219 0.99144 0.98520 1.22466 0.96583 0.99672 0.97479 1.21959 0.93907 0.92088 0.89541 0.90478 1.22793 0.89900 0.91119 0.98135 1.45155 1.26106 1.32447 1.26890 1.18925 1.24427 0.98709 0.93533 0.90789 1.24863 1.00924 0.98071 0.96038 1.69837 1.39626 1.31827 1.14247 0.86233 0.77793 0.82885 0.78972 1.21645 1.21255 1.21172 1.74847 1.03689 1.17101 1.10138 1.82061 1.21109 0.90529 1.11473 0.89120 0.93693 0.93507 0.92263 0.91108 0.87568 0.86988 0.78000 0.88453 0.89993 0.93410 0.92975 0.92631 0.92780 0.91394 0.90598 0.93460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.30 16 2 O -0.39 -3.09 10.70 -35.23 -0.38 -3.47 16 3 C 0.05 0.38 6.14 37.16 0.23 0.61 16 4 C 0.13 0.93 6.91 -4.04 -0.03 0.90 16 5 N -0.37 -4.16 3.69 -61.06 -0.23 -4.39 16 6 C 0.09 1.08 11.28 -16.83 -0.19 0.89 16 7 C -0.09 -1.41 6.68 -83.55 -0.56 -1.97 16 8 C 0.59 11.27 7.69 -12.48 -0.10 11.17 16 9 O -0.57 -11.40 16.37 5.29 0.09 -11.31 16 10 N -0.58 -11.66 2.28 -171.04 -0.39 -12.05 16 11 C 0.09 2.03 5.29 -3.22 -0.02 2.01 16 12 C 0.17 3.89 3.09 -65.88 -0.20 3.69 16 13 H 0.12 2.98 6.47 -51.93 -0.34 2.65 16 14 C -0.14 -2.68 6.16 -25.47 -0.16 -2.84 16 15 C -0.12 -2.30 6.19 -25.25 -0.16 -2.46 16 16 C 0.13 2.73 4.27 -65.66 -0.28 2.45 16 17 H 0.08 1.49 8.14 -51.92 -0.42 1.07 16 18 C 0.10 2.08 6.08 -2.05 -0.01 2.06 16 19 N -0.58 -14.19 2.80 -152.84 -0.43 -14.62 16 20 C -0.23 -6.05 10.37 -15.06 -0.16 -6.21 16 21 H 0.07 1.92 7.84 -52.49 -0.41 1.51 16 22 C 0.00 -0.04 5.42 -17.43 -0.09 -0.13 16 23 N -0.91 -25.22 10.34 55.49 0.57 -24.65 16 24 Si 0.91 21.50 29.56 -169.99 -5.03 16.47 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 26 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 27 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 28 N -0.18 -3.26 8.83 32.85 0.29 -2.97 16 29 N -0.07 -1.10 13.65 60.35 0.82 -0.28 16 30 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.05 0.25 8.14 -51.93 -0.42 -0.18 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.11 0.53 8.08 -51.93 -0.42 0.11 16 37 H 0.20 1.77 8.06 -52.48 -0.42 1.35 16 38 H 0.10 2.05 4.47 -55.23 -0.25 1.81 16 39 H 0.08 2.09 7.70 -51.93 -0.40 1.69 16 40 H 0.05 0.91 7.83 -51.93 -0.41 0.50 16 41 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.05 1.01 7.86 -51.93 -0.41 0.60 16 43 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 45 H 0.08 1.42 7.13 -51.93 -0.37 1.05 16 46 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 371.31 15.07 5.60 5.60 Total: -1.00 -31.75 371.31 -6.47 -38.22 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -6.78 Total: 1.96 kcal Atomic # 6 Polarization: 12.09 SS G_CDS: -0.61 Total: 11.49 kcal Atomic # 7 Polarization: -59.60 SS G_CDS: 0.64 Total: -58.95 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: -0.29 Total: -14.78 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.03 Total: 16.47 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.75 -6.47 -38.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029300505.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.455 kcal (2) G-P(sol) polarization free energy of solvation -31.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds