Wall clock time and date at job start Tue Mar 31 2020 18:29:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42900 * 113.99515 * 2 1 4 4 C 1.53001 * 109.46719 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.47223 * 180.02562 * 4 3 2 6 6 C 1.34811 * 126.59704 * 125.27389 * 5 4 3 7 7 C 1.36602 * 106.83920 * 180.10937 * 6 5 4 8 8 C 1.47521 * 125.76736 * 179.89722 * 7 6 5 9 9 O 1.21589 * 120.00296 * 6.36810 * 8 7 6 10 10 N 1.34777 * 119.99293 * 186.36680 * 8 7 6 11 11 C 1.47159 * 120.71589 * 6.64341 * 10 8 7 12 12 C 1.53883 * 108.03278 * 132.74821 * 11 10 8 13 13 H 1.08994 * 112.57812 * 182.22931 * 12 11 10 14 14 C 1.54135 * 107.70980 * 306.32726 * 12 11 10 15 15 C 1.54275 * 104.89204 * 89.40899 * 14 12 11 16 16 C 1.54543 * 104.84728 * 359.81043 * 15 14 12 17 17 H 1.09008 * 112.18399 * 146.41174 * 16 15 14 18 18 C 1.49252 * 120.76388 * 186.71880 * 10 8 7 19 19 N 1.48307 * 104.36024 * 24.70121 * 16 15 14 20 20 C 1.36937 * 128.07901 * 139.07794 * 19 16 15 21 21 H 1.07995 * 120.00077 * 343.14537 * 20 19 16 22 22 C 1.38811 * 119.99952 * 163.14575 * 20 19 16 23 23 N 1.31620 * 120.00220 * 351.96223 * 22 20 19 24 24 Si 1.86803 * 119.99953 * 171.96813 * 22 20 19 25 25 H 1.48505 * 109.47019 * 179.97438 * 24 22 20 26 26 H 1.48500 * 109.46829 * 299.99544 * 24 22 20 27 27 H 1.48494 * 109.47124 * 59.99917 * 24 22 20 28 28 N 1.34404 * 108.45742 * 359.62728 * 7 6 5 29 29 N 1.28764 * 109.52364 * 0.23323 * 28 7 6 30 30 H 1.09002 * 109.46849 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46927 * 299.99850 * 1 2 3 32 32 H 1.09003 * 109.47210 * 59.99863 * 1 2 3 33 33 H 1.08994 * 109.47261 * 60.00539 * 3 2 1 34 34 H 1.09002 * 109.47219 * 299.99676 * 3 2 1 35 35 H 1.08998 * 109.47604 * 59.99594 * 4 3 2 36 36 H 1.09003 * 109.47072 * 300.00076 * 4 3 2 37 37 H 1.08004 * 126.57984 * 359.96346 * 6 5 4 38 38 H 1.09004 * 109.74994 * 13.11385 * 11 10 8 39 39 H 1.09001 * 109.74861 * 252.38156 * 11 10 8 40 40 H 1.09004 * 110.50731 * 330.46960 * 14 12 11 41 41 H 1.08999 * 110.27576 * 208.23812 * 14 12 11 42 42 H 1.08999 * 110.36383 * 240.96563 * 15 14 12 43 43 H 1.09000 * 110.35973 * 118.65188 * 15 14 12 44 44 H 1.08996 * 110.51616 * 107.82844 * 18 10 8 45 45 H 1.08997 * 109.74794 * 346.60370 * 18 10 8 46 46 H 0.96997 * 120.00449 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 4.1313 2.5231 0.0000 6 6 5.0295 3.0025 0.8836 7 6 5.3068 4.2865 0.5087 8 6 6.2400 5.2020 1.1924 9 8 6.9268 4.7962 2.1101 10 7 6.3311 6.4880 0.7998 11 6 5.4079 7.0335 -0.2080 12 6 4.8755 8.3801 0.3129 13 1 4.1506 8.8333 -0.3633 14 6 4.2876 8.1401 1.7173 15 6 5.4704 8.3548 2.6843 16 6 6.6693 8.7010 1.7726 17 1 7.3541 9.4065 2.2434 18 6 7.3712 7.3903 1.3758 19 7 6.0496 9.2559 0.5448 20 6 6.4618 10.3300 -0.1979 21 1 7.1567 11.0421 0.2219 22 6 5.9863 10.5035 -1.4904 23 7 5.2673 9.5593 -2.0595 24 14 6.3670 12.0772 -2.4223 25 1 5.7499 12.0150 -3.7716 26 1 5.8161 13.2384 -1.6785 27 1 7.8379 12.2287 -2.5578 28 7 4.5902 4.5727 -0.5918 29 7 3.8814 3.5497 -0.9218 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.6886 1.8464 0.8900 34 1 1.6885 1.8464 -0.8900 35 1 3.8568 0.6439 -0.8908 36 1 3.8574 0.6436 0.8891 37 1 5.4477 2.4738 1.7274 38 1 4.5781 6.3431 -0.3594 39 1 5.9374 7.1858 -1.1485 40 1 3.9073 7.1222 1.8033 41 1 3.4944 8.8590 1.9227 42 1 5.6717 7.4425 3.2457 43 1 5.2596 9.1806 3.3638 44 1 8.1480 7.5967 0.6397 45 1 7.8127 6.9271 2.2582 46 1 4.9347 9.6807 -2.9626 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029300505.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:20 Heat of formation + Delta-G solvation = 56.296048 kcal Electronic energy + Delta-G solvation = -29912.069167 eV Core-core repulsion = 25840.349364 eV Total energy + Delta-G solvation = -4071.719803 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.30878 -41.24420 -39.24009 -39.01721 -36.06696 -35.19514 -34.17819 -32.44333 -31.99736 -31.04116 -30.75335 -27.94789 -27.38022 -25.79945 -25.45937 -24.95495 -23.95848 -22.77279 -21.36143 -21.18646 -20.35822 -19.09681 -18.10309 -17.55823 -17.43451 -17.19362 -17.04727 -16.60926 -16.56846 -16.29373 -15.90839 -15.62930 -15.34781 -15.03856 -14.64689 -14.61571 -14.52091 -14.32847 -13.54450 -13.43542 -13.32018 -13.27259 -13.15593 -12.96410 -12.72436 -12.56162 -12.51980 -12.35721 -12.07521 -11.99251 -11.70905 -11.45648 -11.44314 -11.26679 -11.12352 -11.02461 -10.78404 -10.53003 -10.35463 -9.65900 -8.63455 -7.80389 -5.17160 0.12765 0.63745 0.96171 1.50681 1.52023 1.58267 2.05750 2.26739 2.53870 2.68411 3.17932 3.38280 3.46425 3.56302 3.70172 3.79305 3.96957 4.10889 4.12981 4.15423 4.21081 4.25434 4.34505 4.44379 4.45410 4.50638 4.57396 4.61159 4.67803 4.76876 4.84282 4.84718 4.89683 5.03158 5.11514 5.15329 5.22289 5.38161 5.40166 5.51934 5.59582 5.64720 5.86359 5.99363 6.27181 6.54844 6.87861 7.10933 7.18349 7.76571 8.57217 9.30778 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016011 B = 0.003028 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.343379 B = 9243.348923 C =10115.649463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.400 6.400 3 C 0.053 3.947 4 C 0.121 3.879 5 N -0.349 5.349 6 C 0.122 3.878 7 C -0.122 4.122 8 C 0.595 3.405 9 O -0.575 6.575 10 N -0.584 5.584 11 C 0.117 3.883 12 C 0.164 3.836 13 H 0.078 0.922 14 C -0.125 4.125 15 C -0.110 4.110 16 C 0.129 3.871 17 H 0.089 0.911 18 C 0.109 3.891 19 N -0.604 5.604 20 C -0.236 4.236 21 H 0.077 0.923 22 C -0.053 4.053 23 N -0.932 5.932 24 Si 0.971 3.029 25 H -0.298 1.298 26 H -0.281 1.281 27 H -0.281 1.281 28 N -0.221 5.221 29 N -0.091 5.091 30 H 0.106 0.894 31 H 0.051 0.949 32 H 0.046 0.954 33 H 0.060 0.940 34 H 0.055 0.945 35 H 0.118 0.882 36 H 0.150 0.850 37 H 0.245 0.755 38 H 0.107 0.893 39 H 0.035 0.965 40 H 0.056 0.944 41 H 0.055 0.945 42 H 0.068 0.932 43 H 0.069 0.931 44 H 0.048 0.952 45 H 0.094 0.906 46 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.135 -19.614 8.297 22.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.318 6.318 3 C -0.025 4.025 4 C 0.002 3.998 5 N -0.135 5.135 6 C -0.036 4.036 7 C -0.261 4.261 8 C 0.382 3.618 9 O -0.456 6.456 10 N -0.314 5.314 11 C -0.008 4.008 12 C 0.057 3.943 13 H 0.096 0.904 14 C -0.164 4.164 15 C -0.149 4.149 16 C 0.022 3.978 17 H 0.107 0.893 18 C -0.015 4.015 19 N -0.326 5.326 20 C -0.365 4.365 21 H 0.095 0.905 22 C -0.248 4.248 23 N -0.579 5.579 24 Si 0.801 3.199 25 H -0.224 1.224 26 H -0.207 1.207 27 H -0.207 1.207 28 N -0.094 5.094 29 N -0.071 5.071 30 H 0.125 0.875 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.136 0.864 36 H 0.168 0.832 37 H 0.261 0.739 38 H 0.125 0.875 39 H 0.054 0.946 40 H 0.075 0.925 41 H 0.074 0.926 42 H 0.086 0.914 43 H 0.088 0.912 44 H 0.067 0.933 45 H 0.112 0.888 46 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -7.513 -19.498 7.252 22.119 hybrid contribution 0.456 0.961 -0.414 1.142 sum -7.057 -18.537 6.838 20.981 Atomic orbital electron populations 1.22984 0.78664 1.04363 1.00936 1.87744 1.21948 1.26449 1.95688 1.22546 0.92354 0.85667 1.01944 1.22042 0.92679 0.76313 1.08785 1.50511 1.29695 1.13934 1.19321 1.23819 0.90746 0.93273 0.95714 1.21545 1.08054 0.96768 0.99736 1.17054 0.81396 0.81191 0.82184 1.90700 1.47324 1.76840 1.30771 1.48561 1.32906 1.09130 1.40771 1.22674 0.92655 0.96603 0.88885 1.21662 0.89864 0.88891 0.93880 0.90413 1.22438 0.97676 0.99777 0.96544 1.22367 0.94805 1.00814 0.96890 1.22166 0.94853 0.92341 0.88465 0.89328 1.22683 0.89497 0.91216 0.98107 1.45340 1.27077 1.32389 1.27832 1.19233 1.23937 0.99468 0.93894 0.90500 1.25570 1.01525 1.00696 0.97025 1.70039 1.40763 1.33217 1.13895 0.85277 0.77499 0.79877 0.77296 1.22427 1.20688 1.20744 1.74744 1.04761 1.18738 1.11188 1.81977 1.21145 0.91179 1.12781 0.87547 0.93072 0.93501 0.92147 0.92618 0.86390 0.83211 0.73860 0.87537 0.94643 0.92486 0.92585 0.91382 0.91213 0.93331 0.88828 0.94382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 113.37 1.25 1.50 16 2 O -0.40 -5.42 10.70 -148.98 -1.59 -7.02 16 3 C 0.05 0.70 6.14 71.98 0.44 1.15 16 4 C 0.12 1.36 6.91 86.38 0.60 1.95 16 5 N -0.35 -7.00 3.69 -347.08 -1.28 -8.28 16 6 C 0.12 2.59 11.28 83.85 0.95 3.54 16 7 C -0.12 -3.90 6.68 40.82 0.27 -3.62 16 8 C 0.59 22.06 7.69 86.69 0.67 22.73 16 9 O -0.58 -21.87 16.37 -4.00 -0.07 -21.94 16 10 N -0.58 -23.74 2.28 -813.31 -1.86 -25.59 16 11 C 0.12 5.30 5.29 86.55 0.46 5.75 16 12 C 0.16 7.79 3.09 45.33 0.14 7.93 16 13 H 0.08 4.26 6.47 -2.39 -0.02 4.24 16 14 C -0.13 -4.88 6.16 31.41 0.19 -4.68 16 15 C -0.11 -3.90 6.19 31.55 0.20 -3.71 16 16 C 0.13 5.20 4.27 45.47 0.19 5.40 16 17 H 0.09 3.33 8.14 -2.38 -0.02 3.31 16 18 C 0.11 4.30 6.08 86.15 0.52 4.82 16 19 N -0.60 -29.86 2.80 -637.48 -1.78 -31.64 16 20 C -0.24 -12.81 10.37 84.03 0.87 -11.94 16 21 H 0.08 4.01 7.84 -2.91 -0.02 3.99 16 22 C -0.05 -2.95 5.42 84.86 0.46 -2.49 16 23 N -0.93 -54.09 10.34 21.65 0.22 -53.86 16 24 Si 0.97 45.29 29.56 68.60 2.03 47.32 16 25 H -0.30 -14.11 7.11 99.48 0.71 -13.41 16 26 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 27 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 28 N -0.22 -7.86 8.83 -49.99 -0.44 -8.30 16 29 N -0.09 -2.73 13.65 37.02 0.51 -2.22 16 30 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.06 0.79 8.14 -2.39 -0.02 0.78 16 34 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.15 0.64 8.08 -2.39 -0.02 0.62 16 37 H 0.25 2.98 8.06 -2.91 -0.02 2.96 16 38 H 0.11 4.67 4.47 -6.66 -0.03 4.64 16 39 H 0.04 1.92 7.70 -2.39 -0.02 1.90 16 40 H 0.06 2.10 7.83 -2.39 -0.02 2.08 16 41 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 42 H 0.07 2.27 7.86 -2.39 -0.02 2.25 16 43 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 44 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 45 H 0.09 3.36 7.13 -2.39 -0.02 3.34 16 46 H 0.25 14.17 8.31 -92.71 -0.77 13.40 16 Total: -1.00 -71.26 371.31 3.91 -67.35 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: 0.97 Total: 15.88 kcal Atomic # 6 Polarization: 21.11 SS G_CDS: 7.21 Total: 28.32 kcal Atomic # 7 Polarization: -125.27 SS G_CDS: -4.64 Total: -129.91 kcal Atomic # 8 Polarization: -27.29 SS G_CDS: -1.66 Total: -28.95 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -71.26 3.91 -67.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029300505.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.643 kcal (2) G-P(sol) polarization free energy of solvation -71.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds