Wall clock time and date at job start Tue Mar 31 2020 18:24:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34773 * 120.00010 * 2 1 4 4 O 1.21281 * 120.00125 * 180.02562 * 3 2 1 5 5 C 1.50707 * 120.00095 * 0.02562 * 3 2 1 6 6 H 1.08995 * 109.43897 * 299.92792 * 5 3 2 7 7 C 1.53117 * 109.44442 * 180.02562 * 5 3 2 8 8 C 1.53468 * 109.38158 * 170.20475 * 7 5 3 9 9 C 1.50792 * 108.08587 * 48.87074 * 8 7 5 10 10 N 1.29606 * 128.73330 * 164.09486 * 9 8 7 11 11 N 1.28870 * 109.79952 * 180.12292 * 10 9 8 12 12 C 1.31382 * 109.92614 * 359.96255 * 11 10 9 13 13 O 1.35530 * 126.57852 * 179.97438 * 12 11 10 14 14 N 1.35426 * 106.84335 * 359.95599 * 12 11 10 15 15 C 1.46204 * 129.14335 * 180.18760 * 14 12 11 16 16 C 1.46497 * 120.00179 * 180.02562 * 2 1 3 17 17 H 1.09001 * 110.78564 * 181.78136 * 16 2 1 18 18 C 1.55162 * 110.72161 * 305.02292 * 16 2 1 19 19 C 1.55133 * 101.48533 * 82.69367 * 18 16 2 20 20 N 1.47427 * 104.72030 * 37.29729 * 19 18 16 21 21 C 1.36937 * 125.64630 * 155.82026 * 20 19 18 22 22 H 1.08003 * 119.99772 * 199.23070 * 21 20 19 23 23 C 1.38804 * 120.00044 * 19.22472 * 21 20 19 24 24 N 1.31623 * 120.00090 * 28.48534 * 23 21 20 25 25 Si 1.86801 * 120.00180 * 208.48002 * 23 21 20 26 26 H 1.48504 * 109.47194 * 180.02562 * 25 23 21 27 27 H 1.48497 * 109.47077 * 60.00413 * 25 23 21 28 28 H 1.48502 * 109.47239 * 300.00420 * 25 23 21 29 29 C 1.47020 * 108.70577 * 335.55182 * 20 19 18 30 30 H 1.09004 * 109.46995 * 269.99679 * 1 2 3 31 31 H 1.08997 * 109.47431 * 29.99362 * 1 2 3 32 32 H 1.08998 * 109.47117 * 150.00320 * 1 2 3 33 33 H 1.09006 * 109.48497 * 290.17518 * 7 5 3 34 34 H 1.08998 * 109.49083 * 50.20905 * 7 5 3 35 35 H 1.08997 * 109.74303 * 168.52471 * 8 7 5 36 36 H 1.09002 * 109.73676 * 289.22796 * 8 7 5 37 37 H 0.96703 * 114.00485 * 269.99557 * 13 12 11 38 38 H 1.09003 * 109.60677 * 43.14198 * 15 14 12 39 39 H 1.09000 * 109.61126 * 282.65038 * 15 14 12 40 40 H 1.08994 * 111.00311 * 200.93299 * 18 16 2 41 41 H 1.08996 * 111.00118 * 324.78538 * 18 16 2 42 42 H 1.08999 * 110.49497 * 278.45672 * 19 18 16 43 43 H 1.08999 * 110.34079 * 156.06097 * 19 18 16 44 44 H 0.96997 * 119.99655 * 5.66495 * 24 23 21 45 45 H 1.08997 * 109.88565 * 120.70608 * 29 20 19 46 46 H 1.08998 * 109.88481 * 241.87271 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3853 2.4723 0.0006 6 1 0.7595 2.5303 -0.8899 7 6 2.3809 3.6357 -0.0002 8 6 1.6280 4.9502 -0.2459 9 6 0.4470 4.9953 0.6906 10 7 -0.2848 6.0116 1.0245 11 7 -1.1979 5.6383 1.8538 12 6 -1.0895 4.3503 2.0892 13 8 -1.8754 3.6100 2.9085 14 7 -0.0421 3.9041 1.3558 15 6 0.5017 2.5510 1.2513 16 6 2.1975 -1.2687 -0.0006 17 1 3.2730 -1.0944 0.0312 18 6 1.7507 -2.1611 1.1875 19 6 0.4680 -2.8189 0.6144 20 7 0.7745 -3.0618 -0.8070 21 6 0.1810 -4.0063 -1.6014 22 1 0.6634 -4.3250 -2.5136 23 6 -1.0403 -4.5541 -1.2340 24 7 -1.8853 -3.8518 -0.5093 25 14 -1.4848 -6.2880 -1.7682 26 1 -2.8330 -6.6349 -1.2512 27 1 -0.4856 -7.2441 -1.2273 28 1 -1.4894 -6.3631 -3.2513 29 6 1.8182 -2.1177 -1.2323 30 1 -0.3633 -0.0001 1.0277 31 1 -0.3634 0.8900 -0.5137 32 1 -0.3633 -0.8900 -0.5138 33 1 2.8873 3.6815 0.9640 34 1 3.1164 3.4844 -0.7903 35 1 2.2876 5.7949 -0.0476 36 1 1.2807 4.9880 -1.2784 37 1 -1.5592 3.5643 3.8212 38 1 -0.3151 1.8340 1.1677 39 1 1.0986 2.3273 2.1355 40 1 2.5077 -2.9102 1.4196 41 1 1.5194 -1.5568 2.0646 42 1 -0.3822 -2.1435 0.7091 43 1 0.2645 -3.7603 1.1248 44 1 -1.6914 -2.9244 -0.3012 45 1 2.6909 -2.6653 -1.5880 46 1 1.4350 -1.4728 -2.0231 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033202513.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:52 Heat of formation + Delta-G solvation = 49.262990 kcal Electronic energy + Delta-G solvation = -30290.391309 eV Core-core repulsion = 26218.366530 eV Total energy + Delta-G solvation = -4072.024779 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.54310 -40.64623 -38.25543 -37.99813 -36.94706 -34.88842 -33.62741 -32.63352 -31.24157 -29.37621 -29.03179 -28.26463 -26.68568 -25.31786 -24.29658 -23.68419 -22.62517 -21.40164 -20.42718 -19.95844 -19.38704 -18.78812 -17.74365 -17.64500 -17.10696 -16.87110 -16.15949 -15.47140 -15.10213 -14.98901 -14.80749 -14.60076 -14.43517 -14.27691 -13.81436 -13.33780 -13.24415 -12.89437 -12.86842 -12.61733 -12.29053 -12.24936 -12.06128 -12.01146 -11.89499 -11.62539 -11.41307 -11.22774 -10.86909 -10.79636 -10.61698 -10.54078 -10.44009 -10.40977 -10.09623 -9.81404 -9.66335 -9.31046 -8.65101 -8.51158 -7.07367 -6.24061 -3.30131 1.27317 1.72920 2.35405 2.42841 2.81923 3.38116 3.42801 3.46797 3.64286 3.76323 3.90812 4.05523 4.09709 4.47936 4.53866 4.56759 4.73119 4.80809 4.96706 5.02941 5.06490 5.12278 5.16269 5.20521 5.28588 5.42659 5.45181 5.46861 5.54319 5.55599 5.60933 5.70001 5.85187 5.91841 5.95042 6.16197 6.18350 6.24020 6.46047 6.67723 6.80528 6.83661 6.98278 7.31012 7.68644 7.96736 8.34578 8.36266 8.86803 9.66830 10.21590 11.08164 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016922 B = 0.003082 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.222644 B = 9082.903988 C =10072.182334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.590 5.590 3 C 0.522 3.478 4 O -0.536 6.536 5 C -0.122 4.122 6 H 0.112 0.888 7 C -0.106 4.106 8 C -0.033 4.033 9 C 0.191 3.809 10 N -0.276 5.276 11 N -0.288 5.288 12 C 0.354 3.646 13 O -0.434 6.434 14 N -0.480 5.480 15 C 0.105 3.895 16 C 0.125 3.875 17 H 0.105 0.895 18 C -0.145 4.145 19 C 0.134 3.866 20 N -0.600 5.600 21 C -0.339 4.339 22 H 0.064 0.936 23 C -0.021 4.021 24 N -0.911 5.911 25 Si 1.063 2.937 26 H -0.285 1.285 27 H -0.293 1.293 28 H -0.293 1.293 29 C 0.126 3.874 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.107 0.893 33 H 0.079 0.921 34 H 0.100 0.900 35 H 0.109 0.891 36 H 0.100 0.900 37 H 0.407 0.593 38 H 0.115 0.885 39 H 0.095 0.905 40 H 0.078 0.922 41 H 0.065 0.935 42 H 0.035 0.965 43 H 0.050 0.950 44 H 0.265 0.735 45 H 0.037 0.963 46 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.937 14.197 5.316 16.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.322 5.322 3 C 0.308 3.692 4 O -0.413 6.413 5 C -0.144 4.144 6 H 0.130 0.870 7 C -0.144 4.144 8 C -0.073 4.073 9 C -0.076 4.076 10 N -0.117 5.117 11 N -0.139 5.139 12 C 0.050 3.950 13 O -0.233 6.233 14 N -0.183 5.183 15 C -0.018 4.018 16 C 0.022 3.978 17 H 0.123 0.877 18 C -0.184 4.184 19 C 0.009 3.991 20 N -0.328 5.328 21 C -0.467 4.467 22 H 0.081 0.919 23 C -0.223 4.223 24 N -0.552 5.552 25 Si 0.893 3.107 26 H -0.210 1.210 27 H -0.221 1.221 28 H -0.220 1.220 29 C -0.001 4.001 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.125 0.875 33 H 0.097 0.903 34 H 0.118 0.882 35 H 0.127 0.873 36 H 0.119 0.881 37 H 0.264 0.736 38 H 0.132 0.868 39 H 0.113 0.887 40 H 0.096 0.904 41 H 0.083 0.917 42 H 0.052 0.948 43 H 0.068 0.932 44 H 0.077 0.923 45 H 0.055 0.945 46 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 5.393 14.104 5.073 15.929 hybrid contribution 1.528 -0.353 0.307 1.598 sum 6.920 13.750 5.380 16.307 Atomic orbital electron populations 1.22313 0.79172 1.04857 1.01945 1.47845 1.07266 1.05643 1.71433 1.20018 0.87777 0.84532 0.76836 1.90702 1.13400 1.87024 1.50140 1.21668 0.98242 0.95153 0.99298 0.87011 1.21565 0.97083 0.90519 1.05268 1.20340 0.90516 0.99665 0.96740 1.24700 1.00110 0.82628 1.00168 1.74023 1.02897 1.23640 1.11159 1.74863 1.18430 1.05854 1.14764 1.21843 0.87965 0.88720 0.96505 1.84940 1.45412 1.69026 1.23913 1.46641 1.24683 1.10780 1.36236 1.22271 0.99318 0.80744 0.99464 1.22190 0.96725 0.81928 0.96977 0.87691 1.23194 1.00307 0.98553 0.96371 1.21809 0.93155 0.98419 0.85697 1.44569 1.44152 1.38385 1.05668 1.19701 1.03327 1.16333 1.07333 0.91867 1.25758 0.90981 1.05517 1.00074 1.70848 1.33795 1.09939 1.40597 0.83542 0.75976 0.75644 0.75568 1.21042 1.22064 1.21960 1.21679 0.93338 0.91192 0.93860 0.92287 0.91810 0.87500 0.90261 0.88164 0.87275 0.88147 0.73575 0.86761 0.88651 0.90361 0.91652 0.94769 0.93174 0.92347 0.94547 0.95324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.78 6.87 59.85 0.41 1.19 16 2 N -0.59 -8.02 2.82 -171.83 -0.49 -8.51 16 3 C 0.52 6.52 7.06 -10.98 -0.08 6.44 16 4 O -0.54 -8.17 15.19 5.56 0.08 -8.09 16 5 C -0.12 -1.11 1.73 -91.53 -0.16 -1.27 16 6 H 0.11 0.96 7.38 -51.93 -0.38 0.58 16 7 C -0.11 -0.83 4.68 -26.43 -0.12 -0.96 16 8 C -0.03 -0.24 6.34 -27.60 -0.17 -0.41 16 9 C 0.19 2.05 7.78 -154.45 -1.20 0.85 16 10 N -0.28 -3.77 12.17 32.93 0.40 -3.37 16 11 N -0.29 -4.12 12.24 29.53 0.36 -3.76 16 12 C 0.35 4.16 9.30 -89.29 -0.83 3.33 16 13 O -0.43 -4.03 13.64 -18.28 -0.25 -4.28 16 14 N -0.48 -4.94 3.16 -115.37 -0.36 -5.31 16 15 C 0.10 0.91 5.83 -4.03 -0.02 0.88 16 16 C 0.12 1.98 3.58 -66.09 -0.24 1.74 16 17 H 0.11 1.66 7.00 -51.93 -0.36 1.29 16 18 C -0.14 -2.32 6.54 -24.46 -0.16 -2.48 16 19 C 0.13 2.75 4.50 -2.41 -0.01 2.74 16 20 N -0.60 -13.84 2.84 -169.93 -0.48 -14.32 16 21 C -0.34 -9.01 10.00 -15.06 -0.15 -9.16 16 22 H 0.06 1.71 7.97 -52.48 -0.42 1.29 16 23 C -0.02 -0.57 5.09 -17.43 -0.09 -0.66 16 24 N -0.91 -25.58 13.01 55.49 0.72 -24.86 16 25 Si 1.06 24.25 30.00 -169.99 -5.10 19.15 16 26 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 27 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 28 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 29 C 0.13 2.43 6.25 -3.06 -0.02 2.41 16 30 H 0.06 0.68 7.01 -51.93 -0.36 0.32 16 31 H 0.06 0.69 5.90 -51.93 -0.31 0.38 16 32 H 0.11 1.86 5.18 -51.93 -0.27 1.59 16 33 H 0.08 0.65 8.12 -51.93 -0.42 0.23 16 34 H 0.10 0.80 7.77 -51.93 -0.40 0.39 16 35 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.41 1.57 9.06 45.56 0.41 1.99 16 38 H 0.11 0.99 4.88 -51.93 -0.25 0.74 16 39 H 0.10 0.75 8.12 -51.93 -0.42 0.33 16 40 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 41 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 42 H 0.03 0.71 4.17 -51.93 -0.22 0.50 16 43 H 0.05 1.16 8.07 -51.93 -0.42 0.74 16 44 H 0.27 7.27 6.18 -40.82 -0.25 7.02 16 45 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.03 0.58 8.04 -51.93 -0.42 0.16 16 LS Contribution 357.52 15.07 5.39 5.39 Total: -1.00 -34.12 357.52 -7.98 -42.10 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -5.41 Total: 1.18 kcal Atomic # 6 Polarization: 7.51 SS G_CDS: -2.84 Total: 4.66 kcal Atomic # 7 Polarization: -60.27 SS G_CDS: 0.15 Total: -60.12 kcal Atomic # 8 Polarization: -12.20 SS G_CDS: -0.16 Total: -12.36 kcal Atomic # 14 Polarization: 24.25 SS G_CDS: -5.10 Total: 19.15 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -34.12 -7.98 -42.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033202513.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.359 kcal (2) G-P(sol) polarization free energy of solvation -34.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds