Wall clock time and date at job start Tue Mar 31 2020 18:24:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34773 * 120.00010 * 2 1 4 4 O 1.21281 * 120.00125 * 180.02562 * 3 2 1 5 5 C 1.50707 * 120.00095 * 0.02562 * 3 2 1 6 6 H 1.08995 * 109.43897 * 299.92792 * 5 3 2 7 7 C 1.53117 * 109.44442 * 180.02562 * 5 3 2 8 8 C 1.53468 * 109.38158 * 170.20475 * 7 5 3 9 9 C 1.50792 * 108.08587 * 48.87074 * 8 7 5 10 10 N 1.29606 * 128.73330 * 164.09486 * 9 8 7 11 11 N 1.28870 * 109.79952 * 180.12292 * 10 9 8 12 12 C 1.31382 * 109.92614 * 359.96255 * 11 10 9 13 13 O 1.35530 * 126.57852 * 179.97438 * 12 11 10 14 14 N 1.35426 * 106.84335 * 359.95599 * 12 11 10 15 15 C 1.46204 * 129.14335 * 180.18760 * 14 12 11 16 16 C 1.46497 * 120.00179 * 180.02562 * 2 1 3 17 17 H 1.09001 * 110.78564 * 181.78136 * 16 2 1 18 18 C 1.55162 * 110.72161 * 305.02292 * 16 2 1 19 19 C 1.55133 * 101.48533 * 82.69367 * 18 16 2 20 20 N 1.47427 * 104.72030 * 37.29729 * 19 18 16 21 21 C 1.36937 * 125.64630 * 155.82026 * 20 19 18 22 22 H 1.08003 * 119.99772 * 199.23070 * 21 20 19 23 23 C 1.38804 * 120.00044 * 19.22472 * 21 20 19 24 24 N 1.31623 * 120.00090 * 28.48534 * 23 21 20 25 25 Si 1.86801 * 120.00180 * 208.48002 * 23 21 20 26 26 H 1.48504 * 109.47194 * 180.02562 * 25 23 21 27 27 H 1.48497 * 109.47077 * 60.00413 * 25 23 21 28 28 H 1.48502 * 109.47239 * 300.00420 * 25 23 21 29 29 C 1.47020 * 108.70577 * 335.55182 * 20 19 18 30 30 H 1.09004 * 109.46995 * 269.99679 * 1 2 3 31 31 H 1.08997 * 109.47431 * 29.99362 * 1 2 3 32 32 H 1.08998 * 109.47117 * 150.00320 * 1 2 3 33 33 H 1.09006 * 109.48497 * 290.17518 * 7 5 3 34 34 H 1.08998 * 109.49083 * 50.20905 * 7 5 3 35 35 H 1.08997 * 109.74303 * 168.52471 * 8 7 5 36 36 H 1.09002 * 109.73676 * 289.22796 * 8 7 5 37 37 H 0.96703 * 114.00485 * 269.99557 * 13 12 11 38 38 H 1.09003 * 109.60677 * 43.14198 * 15 14 12 39 39 H 1.09000 * 109.61126 * 282.65038 * 15 14 12 40 40 H 1.08994 * 111.00311 * 200.93299 * 18 16 2 41 41 H 1.08996 * 111.00118 * 324.78538 * 18 16 2 42 42 H 1.08999 * 110.49497 * 278.45672 * 19 18 16 43 43 H 1.08999 * 110.34079 * 156.06097 * 19 18 16 44 44 H 0.96997 * 119.99655 * 5.66495 * 24 23 21 45 45 H 1.08997 * 109.88565 * 120.70608 * 29 20 19 46 46 H 1.08998 * 109.88481 * 241.87271 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3853 2.4723 0.0006 6 1 0.7595 2.5303 -0.8899 7 6 2.3809 3.6357 -0.0002 8 6 1.6280 4.9502 -0.2459 9 6 0.4470 4.9953 0.6906 10 7 -0.2848 6.0116 1.0245 11 7 -1.1979 5.6383 1.8538 12 6 -1.0895 4.3503 2.0892 13 8 -1.8754 3.6100 2.9085 14 7 -0.0421 3.9041 1.3558 15 6 0.5017 2.5510 1.2513 16 6 2.1975 -1.2687 -0.0006 17 1 3.2730 -1.0944 0.0312 18 6 1.7507 -2.1611 1.1875 19 6 0.4680 -2.8189 0.6144 20 7 0.7745 -3.0618 -0.8070 21 6 0.1810 -4.0063 -1.6014 22 1 0.6634 -4.3250 -2.5136 23 6 -1.0403 -4.5541 -1.2340 24 7 -1.8853 -3.8518 -0.5093 25 14 -1.4848 -6.2880 -1.7682 26 1 -2.8330 -6.6349 -1.2512 27 1 -0.4856 -7.2441 -1.2273 28 1 -1.4894 -6.3631 -3.2513 29 6 1.8182 -2.1177 -1.2323 30 1 -0.3633 -0.0001 1.0277 31 1 -0.3634 0.8900 -0.5137 32 1 -0.3633 -0.8900 -0.5138 33 1 2.8873 3.6815 0.9640 34 1 3.1164 3.4844 -0.7903 35 1 2.2876 5.7949 -0.0476 36 1 1.2807 4.9880 -1.2784 37 1 -1.5592 3.5643 3.8212 38 1 -0.3151 1.8340 1.1677 39 1 1.0986 2.3273 2.1355 40 1 2.5077 -2.9102 1.4196 41 1 1.5194 -1.5568 2.0646 42 1 -0.3822 -2.1435 0.7091 43 1 0.2645 -3.7603 1.1248 44 1 -1.6914 -2.9244 -0.3012 45 1 2.6909 -2.6653 -1.5880 46 1 1.4350 -1.4728 -2.0231 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033202513.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:51 Heat of formation + Delta-G solvation = 23.997595 kcal Electronic energy + Delta-G solvation = -30291.486899 eV Core-core repulsion = 26218.366530 eV Total energy + Delta-G solvation = -4073.120369 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.37218 -41.72426 -39.55122 -38.75432 -37.86656 -36.25951 -34.37123 -34.26890 -32.23962 -30.92868 -30.08892 -29.48581 -27.88654 -26.47031 -25.72233 -24.57372 -23.44211 -22.46521 -22.14113 -20.89733 -20.23498 -19.79189 -19.55088 -18.66171 -17.96838 -17.77665 -17.29104 -16.43127 -16.39178 -15.88273 -15.83106 -15.67129 -15.54432 -15.37791 -15.22624 -14.98175 -14.41728 -14.07002 -13.70586 -13.54825 -13.52195 -13.36103 -13.28153 -12.93808 -12.86735 -12.64923 -12.60779 -12.53527 -12.29806 -12.14285 -12.06247 -11.95876 -11.86469 -11.58216 -11.36197 -11.23547 -10.92009 -10.49783 -10.15445 -9.81484 -8.99147 -8.31973 -5.34887 0.50511 0.93785 1.38432 1.56664 1.58459 1.64336 1.76753 1.83701 2.62425 2.64755 3.04023 3.10670 3.18043 3.30008 3.42567 3.50506 3.68680 3.78954 3.85710 3.90114 4.02750 4.06171 4.17103 4.21807 4.31924 4.40053 4.45176 4.47018 4.51892 4.59518 4.73549 4.79858 4.79954 4.89443 4.92722 4.97397 4.99070 5.07768 5.10696 5.24442 5.43561 5.50644 5.69400 6.24592 6.34837 6.38306 6.90941 6.93767 7.48755 7.68770 8.27599 9.00265 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016922 B = 0.003082 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.222644 B = 9082.903988 C =10072.182334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.592 5.592 3 C 0.529 3.471 4 O -0.559 6.559 5 C -0.114 4.114 6 H 0.122 0.878 7 C -0.099 4.099 8 C -0.027 4.027 9 C 0.197 3.803 10 N -0.311 5.311 11 N -0.330 5.330 12 C 0.359 3.641 13 O -0.438 6.438 14 N -0.478 5.478 15 C 0.108 3.892 16 C 0.140 3.860 17 H 0.113 0.887 18 C -0.128 4.128 19 C 0.138 3.862 20 N -0.617 5.617 21 C -0.349 4.349 22 H 0.051 0.949 23 C -0.067 4.067 24 N -0.936 5.936 25 Si 1.109 2.891 26 H -0.291 1.291 27 H -0.284 1.284 28 H -0.279 1.279 29 C 0.125 3.875 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.063 0.937 33 H 0.078 0.922 34 H 0.103 0.897 35 H 0.127 0.873 36 H 0.117 0.883 37 H 0.429 0.571 38 H 0.117 0.883 39 H 0.109 0.891 40 H 0.083 0.917 41 H 0.093 0.907 42 H 0.034 0.966 43 H 0.015 0.985 44 H 0.259 0.741 45 H 0.033 0.967 46 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.960 14.893 5.718 17.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.324 5.324 3 C 0.317 3.683 4 O -0.438 6.438 5 C -0.136 4.136 6 H 0.140 0.860 7 C -0.137 4.137 8 C -0.066 4.066 9 C -0.071 4.071 10 N -0.152 5.152 11 N -0.181 5.181 12 C 0.053 3.947 13 O -0.241 6.241 14 N -0.181 5.181 15 C -0.014 4.014 16 C 0.036 3.964 17 H 0.131 0.869 18 C -0.167 4.167 19 C 0.013 3.987 20 N -0.345 5.345 21 C -0.478 4.478 22 H 0.069 0.931 23 C -0.264 4.264 24 N -0.578 5.578 25 Si 0.934 3.066 26 H -0.217 1.217 27 H -0.210 1.210 28 H -0.205 1.205 29 C -0.001 4.001 30 H 0.095 0.905 31 H 0.106 0.894 32 H 0.081 0.919 33 H 0.097 0.903 34 H 0.121 0.879 35 H 0.145 0.855 36 H 0.135 0.865 37 H 0.291 0.709 38 H 0.135 0.865 39 H 0.127 0.873 40 H 0.102 0.898 41 H 0.112 0.888 42 H 0.051 0.949 43 H 0.033 0.967 44 H 0.070 0.930 45 H 0.051 0.949 46 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 6.438 14.828 5.494 17.073 hybrid contribution 1.244 -0.565 0.164 1.377 sum 7.682 14.263 5.658 17.160 Atomic orbital electron populations 1.22241 0.78723 1.03835 1.02808 1.47831 1.07394 1.05312 1.71825 1.20438 0.87494 0.84887 0.75493 1.90700 1.14651 1.87375 1.51059 1.21637 0.98402 0.93502 1.00013 0.86018 1.21525 0.96705 0.90067 1.05408 1.20510 0.89435 0.99922 0.96737 1.25320 1.00088 0.82097 0.99596 1.73936 1.03882 1.25108 1.12244 1.74759 1.19681 1.07476 1.16152 1.21875 0.87922 0.88421 0.96501 1.84900 1.45467 1.68382 1.25376 1.46681 1.24313 1.11167 1.35938 1.22325 0.99390 0.79945 0.99763 1.21903 0.97278 0.82486 0.94779 0.86879 1.23089 0.97840 0.98646 0.97117 1.21772 0.95508 0.97021 0.84351 1.44727 1.44372 1.38719 1.06681 1.19879 1.03304 1.17142 1.07474 0.93082 1.26908 0.91201 1.08100 1.00236 1.70921 1.34630 1.09973 1.42296 0.82920 0.75457 0.72171 0.76037 1.21681 1.21046 1.20458 1.21739 0.91964 0.90950 0.95401 0.90497 0.89409 0.91853 0.90330 0.87868 0.85451 0.86513 0.70916 0.86518 0.87303 0.89805 0.88830 0.94862 0.96673 0.93011 0.94932 0.96439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.62 6.87 127.77 0.88 2.49 16 2 N -0.59 -14.81 2.82 -815.94 -2.30 -17.11 16 3 C 0.53 11.73 7.06 87.66 0.62 12.35 16 4 O -0.56 -15.57 15.19 -3.03 -0.05 -15.61 16 5 C -0.11 -1.72 1.73 -11.38 -0.02 -1.74 16 6 H 0.12 1.68 7.38 -2.39 -0.02 1.66 16 7 C -0.10 -1.24 4.68 30.79 0.14 -1.09 16 8 C -0.03 -0.31 6.34 30.03 0.19 -0.12 16 9 C 0.20 3.82 7.78 137.83 1.07 4.89 16 10 N -0.31 -8.20 12.17 -49.74 -0.61 -8.81 16 11 N -0.33 -9.24 12.24 -173.86 -2.13 -11.37 16 12 C 0.36 7.88 9.30 179.88 1.67 9.55 16 13 O -0.44 -7.35 13.64 -88.34 -1.20 -8.55 16 14 N -0.48 -8.72 3.16 -630.22 -1.99 -10.71 16 15 C 0.11 1.53 5.83 86.55 0.50 2.04 16 16 C 0.14 4.20 3.58 46.18 0.17 4.36 16 17 H 0.11 3.32 7.00 -2.39 -0.02 3.30 16 18 C -0.13 -3.86 6.54 32.07 0.21 -3.65 16 19 C 0.14 5.69 4.50 86.93 0.39 6.08 16 20 N -0.62 -28.88 2.84 -691.54 -1.97 -30.84 16 21 C -0.35 -18.90 10.00 84.03 0.84 -18.06 16 22 H 0.05 2.82 7.97 -2.91 -0.02 2.79 16 23 C -0.07 -3.65 5.09 84.86 0.43 -3.21 16 24 N -0.94 -53.49 13.01 21.65 0.28 -53.21 16 25 Si 1.11 49.37 30.00 68.60 2.06 51.42 16 26 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 27 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 28 H -0.28 -11.65 7.11 99.48 0.71 -10.95 16 29 C 0.13 4.84 6.25 86.73 0.54 5.39 16 30 H 0.08 1.59 7.01 -2.39 -0.02 1.58 16 31 H 0.09 1.69 5.90 -2.39 -0.01 1.67 16 32 H 0.06 2.19 5.18 -2.39 -0.01 2.17 16 33 H 0.08 1.04 8.12 -2.38 -0.02 1.02 16 34 H 0.10 1.31 7.77 -2.39 -0.02 1.29 16 35 H 0.13 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.43 2.44 9.06 -74.06 -0.67 1.77 16 38 H 0.12 1.64 4.88 -2.39 -0.01 1.63 16 39 H 0.11 1.31 8.12 -2.39 -0.02 1.29 16 40 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 41 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 42 H 0.03 1.39 4.17 -2.39 -0.01 1.38 16 43 H 0.01 0.71 8.07 -2.39 -0.02 0.69 16 44 H 0.26 14.59 6.18 -92.71 -0.57 14.01 16 45 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 46 H 0.02 0.72 8.04 -2.39 -0.02 0.70 16 Total: -1.00 -75.58 357.52 0.30 -75.29 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: 0.56 Total: 10.23 kcal Atomic # 6 Polarization: 11.63 SS G_CDS: 7.64 Total: 19.27 kcal Atomic # 7 Polarization: -123.33 SS G_CDS: -8.71 Total: -132.04 kcal Atomic # 8 Polarization: -22.91 SS G_CDS: -1.25 Total: -24.16 kcal Atomic # 14 Polarization: 49.37 SS G_CDS: 2.06 Total: 51.42 kcal Total: -75.58 0.30 -75.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033202513.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.283 kcal (2) G-P(sol) polarization free energy of solvation -75.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds