Wall clock time and date at job start Tue Mar 31 2020 18:24:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34779 * 120.00126 * 2 1 4 4 O 1.21590 * 119.99997 * 185.27062 * 3 2 1 5 5 C 1.47524 * 119.99662 * 5.27004 * 3 2 1 6 6 C 1.36597 * 125.76719 * 185.17585 * 5 3 2 7 7 N 1.34814 * 106.83895 * 179.97438 * 6 5 3 8 8 C 1.46508 * 126.59482 * 179.97438 * 7 6 5 9 9 H 1.08996 * 110.43592 * 154.30055 * 8 7 6 10 10 C 1.54809 * 110.48651 * 276.84876 * 8 7 6 11 11 C 1.55351 * 101.93026 * 97.82513 * 10 8 7 12 12 O 1.44374 * 103.50450 * 37.05086 * 11 10 8 13 13 C 1.43752 * 106.97306 * 319.90983 * 12 11 10 14 14 N 1.40204 * 106.81143 * 0.02562 * 7 6 5 15 15 N 1.28764 * 108.36829 * 359.74297 * 14 7 6 16 16 C 1.46499 * 119.99870 * 179.97438 * 2 1 3 17 17 H 1.09000 * 110.88525 * 189.58022 * 16 2 1 18 18 C 1.55166 * 111.00341 * 65.70492 * 16 2 1 19 19 C 1.54321 * 102.94094 * 277.42937 * 18 16 2 20 20 N 1.47028 * 107.27175 * 337.80374 * 19 18 16 21 21 C 1.36934 * 125.64821 * 178.98778 * 20 19 18 22 22 H 1.08004 * 119.99857 * 174.97305 * 21 20 19 23 23 C 1.38811 * 120.00128 * 354.97449 * 21 20 19 24 24 N 1.31613 * 119.99905 * 5.14527 * 23 21 20 25 25 Si 1.86802 * 120.00137 * 185.14818 * 23 21 20 26 26 H 1.48503 * 109.47082 * 94.99554 * 25 23 21 27 27 H 1.48494 * 109.47214 * 214.99773 * 25 23 21 28 28 H 1.48507 * 109.46872 * 335.00073 * 25 23 21 29 29 C 1.47422 * 108.70256 * 358.94576 * 20 19 18 30 30 H 1.08998 * 109.47362 * 175.09653 * 1 2 3 31 31 H 1.09001 * 109.46995 * 55.09926 * 1 2 3 32 32 H 1.08998 * 109.47111 * 295.10189 * 1 2 3 33 33 H 1.07997 * 126.58105 * 359.97438 * 6 5 3 34 34 H 1.09000 * 110.90741 * 215.99177 * 10 8 7 35 35 H 1.08994 * 110.91328 * 339.59482 * 10 8 7 36 36 H 1.09000 * 110.63755 * 278.52722 * 11 10 8 37 37 H 1.09003 * 110.71708 * 155.60554 * 11 10 8 38 38 H 1.08999 * 109.87447 * 267.08538 * 13 12 11 39 39 H 1.08999 * 110.00070 * 146.01254 * 13 12 11 40 40 H 1.08999 * 110.71717 * 35.78795 * 18 16 2 41 41 H 1.08999 * 110.71883 * 159.06446 * 18 16 2 42 42 H 1.08998 * 109.88788 * 97.22025 * 19 18 16 43 43 H 1.09000 * 109.88451 * 218.23622 * 19 18 16 44 44 H 0.97003 * 119.99918 * 179.97438 * 24 23 21 45 45 H 1.09003 * 110.36511 * 265.29050 * 29 20 19 46 46 H 1.08997 * 110.37023 * 142.96468 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3510 1.1694 -0.0967 5 6 1.4059 2.4421 0.1174 6 6 1.9552 3.6897 0.0306 7 7 0.9482 4.5717 0.1908 8 6 1.0560 6.0327 0.1747 9 1 0.1083 6.4810 -0.1233 10 6 1.4915 6.5592 1.5639 11 6 3.0208 6.7513 1.3695 12 8 3.1309 7.2270 0.0108 13 6 2.1857 6.4797 -0.7732 14 7 -0.2218 3.8220 0.3768 15 7 0.0841 2.5724 0.3226 16 6 2.1975 -1.2687 0.0006 17 1 3.2614 -1.1031 0.1700 18 6 1.9594 -2.0490 -1.3194 19 6 0.6135 -2.7592 -1.0630 20 7 0.4355 -2.8445 0.3939 21 6 -0.6445 -3.3896 1.0354 22 1 -0.6451 -3.4782 2.1118 23 6 -1.7385 -3.8284 0.3023 24 7 -1.6975 -3.8145 -1.0132 25 14 -3.2690 -4.4385 1.1826 26 1 -4.2455 -3.3265 1.3059 27 1 -3.8777 -5.5480 0.4058 28 1 -2.9003 -4.9257 2.5362 29 6 1.6128 -2.2469 1.0498 30 1 -0.3634 -1.0239 -0.0878 31 1 -0.3633 0.5880 -0.8428 32 1 -0.3633 0.4360 0.9306 33 1 2.9963 3.9246 -0.1346 34 1 1.0051 7.5080 1.7903 35 1 1.2858 5.8231 2.3409 36 1 3.5453 5.8032 1.4880 37 1 3.4082 7.4928 2.0683 38 1 2.6726 5.6065 -1.2074 39 1 1.7782 7.1085 -1.5649 40 1 1.8792 -1.3637 -2.1632 41 1 2.7538 -2.7764 -1.4860 42 1 -0.1999 -2.1821 -1.5026 43 1 0.6340 -3.7596 -1.4954 44 1 -2.4619 -4.1214 -1.5255 45 1 2.3420 -3.0186 1.2967 46 1 1.3132 -1.7059 1.9473 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033565372.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:37 Heat of formation + Delta-G solvation = 78.530887 kcal Electronic energy + Delta-G solvation = -29748.526102 eV Core-core repulsion = 25677.770474 eV Total energy + Delta-G solvation = -4070.755628 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.46039 -40.04023 -39.43230 -37.37931 -35.00435 -34.09296 -32.18487 -31.56523 -30.75159 -29.55005 -29.17964 -27.74013 -25.95135 -24.84443 -24.16841 -23.39985 -22.98046 -21.21176 -20.76278 -20.04900 -19.02378 -17.92327 -17.20490 -16.94643 -16.60311 -16.12995 -15.95868 -15.71348 -15.27488 -14.79663 -14.68260 -14.56944 -14.08626 -13.77047 -13.73484 -13.09213 -12.98117 -12.83985 -12.61071 -12.21875 -12.07575 -11.95455 -11.94296 -11.84990 -11.66555 -11.56192 -11.04850 -10.91582 -10.79810 -10.70865 -10.50581 -10.40194 -10.20604 -10.10779 -9.91494 -9.66359 -9.43307 -9.36297 -8.62349 -8.09209 -6.82945 -5.73308 -3.07319 0.96795 1.69939 1.77763 3.13245 3.33431 3.41342 3.45130 3.47135 3.48425 3.65776 3.82703 4.09038 4.13995 4.31869 4.48314 4.49695 4.57848 4.77498 4.89735 4.97923 5.06882 5.14763 5.18817 5.24543 5.39375 5.46130 5.50551 5.66056 5.75381 5.92558 5.98091 6.09916 6.20883 6.30844 6.37942 6.43098 6.57394 6.62137 6.68993 6.98095 7.19474 7.55168 7.61343 7.80645 7.85978 7.92392 8.22500 8.44455 9.19875 9.79343 10.44722 11.37790 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.019948 B = 0.002790 C = 0.002584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.332493 B =10033.216111 C =10832.590886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.569 5.569 3 C 0.593 3.407 4 O -0.556 6.556 5 C -0.084 4.084 6 C 0.083 3.917 7 N -0.361 5.361 8 C 0.116 3.884 9 H 0.131 0.869 10 C -0.165 4.165 11 C 0.040 3.960 12 O -0.365 6.365 13 C 0.037 3.963 14 N -0.067 5.067 15 N -0.187 5.187 16 C 0.123 3.877 17 H 0.099 0.901 18 C -0.155 4.155 19 C 0.171 3.829 20 N -0.602 5.602 21 C -0.230 4.230 22 H 0.078 0.922 23 C -0.004 4.004 24 N -0.919 5.919 25 Si 0.910 3.090 26 H -0.288 1.288 27 H -0.292 1.292 28 H -0.281 1.281 29 C 0.126 3.874 30 H 0.133 0.867 31 H 0.048 0.952 32 H 0.059 0.941 33 H 0.200 0.800 34 H 0.104 0.896 35 H 0.095 0.905 36 H 0.068 0.932 37 H 0.105 0.895 38 H 0.076 0.924 39 H 0.110 0.890 40 H 0.063 0.937 41 H 0.068 0.932 42 H 0.054 0.946 43 H 0.041 0.959 44 H 0.253 0.747 45 H 0.033 0.967 46 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.303 22.024 1.622 23.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.298 5.298 3 C 0.379 3.621 4 O -0.435 6.435 5 C -0.223 4.223 6 C -0.073 4.073 7 N -0.147 5.147 8 C 0.013 3.987 9 H 0.149 0.851 10 C -0.203 4.203 11 C -0.036 4.036 12 O -0.283 6.283 13 C -0.042 4.042 14 N -0.047 5.047 15 N -0.061 5.061 16 C 0.019 3.981 17 H 0.117 0.883 18 C -0.194 4.194 19 C 0.047 3.953 20 N -0.329 5.329 21 C -0.359 4.359 22 H 0.096 0.904 23 C -0.201 4.201 24 N -0.566 5.566 25 Si 0.740 3.260 26 H -0.215 1.215 27 H -0.218 1.218 28 H -0.207 1.207 29 C -0.001 4.001 30 H 0.151 0.849 31 H 0.067 0.933 32 H 0.077 0.923 33 H 0.216 0.784 34 H 0.122 0.878 35 H 0.113 0.887 36 H 0.086 0.914 37 H 0.123 0.877 38 H 0.094 0.906 39 H 0.128 0.872 40 H 0.081 0.919 41 H 0.087 0.913 42 H 0.073 0.927 43 H 0.059 0.941 44 H 0.063 0.937 45 H 0.051 0.949 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 7.330 22.138 1.667 23.379 hybrid contribution -0.109 -0.379 0.289 0.489 sum 7.221 21.759 1.957 23.009 Atomic orbital electron populations 1.22496 0.77010 1.07555 1.00838 1.47585 1.08504 1.04413 1.69300 1.16866 0.85924 0.82047 0.77257 1.90747 1.12959 1.86963 1.52844 1.21542 0.90528 0.94925 1.15307 1.23180 0.96348 0.88911 0.98870 1.50578 1.07271 1.07440 1.49400 1.22958 1.03189 0.74661 0.97854 0.85104 1.23683 0.97194 1.03626 0.95807 1.23789 0.94762 1.00860 0.84180 1.88977 1.59196 1.60653 1.19492 1.23651 0.88450 0.97943 0.94110 1.82076 1.04189 0.96315 1.22107 1.75004 1.12476 1.09370 1.09213 1.22315 0.95969 0.82361 0.97437 0.88288 1.23260 1.00882 0.98944 0.96320 1.21263 0.91132 0.98294 0.84609 1.44617 1.17794 1.69003 1.01487 1.19033 0.92139 1.33546 0.91133 0.90389 1.24796 0.98237 1.01459 0.95607 1.69970 1.30191 1.52571 1.03850 0.86134 0.83383 0.78026 0.78442 1.21508 1.21841 1.20700 1.21888 0.90521 0.93223 0.94456 0.84871 0.93288 0.92290 0.78361 0.87800 0.88695 0.91412 0.87679 0.90620 0.87246 0.91858 0.91318 0.92749 0.94111 0.93690 0.94924 0.93574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.25 8.12 59.85 0.49 1.74 16 2 N -0.57 -10.66 2.91 -172.71 -0.50 -11.16 16 3 C 0.59 10.54 7.66 -12.47 -0.10 10.44 16 4 O -0.56 -10.53 16.30 5.29 0.09 -10.44 16 5 C -0.08 -1.29 6.72 -83.55 -0.56 -1.85 16 6 C 0.08 0.95 10.02 -16.83 -0.17 0.78 16 7 N -0.36 -3.71 3.58 -53.08 -0.19 -3.90 16 8 C 0.12 0.74 4.18 -66.40 -0.28 0.46 16 9 H 0.13 0.66 8.14 -51.93 -0.42 0.23 16 10 C -0.16 -0.85 6.91 -24.53 -0.17 -1.02 16 11 C 0.04 0.22 7.73 38.40 0.30 0.51 16 12 O -0.36 -2.61 11.52 -35.23 -0.41 -3.01 16 13 C 0.04 0.21 7.27 37.73 0.27 0.49 16 14 N -0.07 -0.95 13.78 60.35 0.83 -0.11 16 15 N -0.19 -3.03 8.98 32.85 0.30 -2.73 16 16 C 0.12 2.32 3.62 -65.78 -0.24 2.08 16 17 H 0.10 1.78 7.11 -51.93 -0.37 1.41 16 18 C -0.15 -2.96 6.55 -24.89 -0.16 -3.13 16 19 C 0.17 4.02 4.32 -3.06 -0.01 4.01 16 20 N -0.60 -14.63 1.96 -170.07 -0.33 -14.97 16 21 C -0.23 -6.16 9.99 -15.06 -0.15 -6.31 16 22 H 0.08 2.04 7.83 -52.48 -0.41 1.63 16 23 C 0.00 -0.12 5.48 -17.43 -0.10 -0.21 16 24 N -0.92 -26.05 10.34 55.49 0.57 -25.48 16 25 Si 0.91 21.72 29.56 -169.99 -5.02 16.70 16 26 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 27 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 28 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 29 C 0.13 2.59 6.41 -2.53 -0.02 2.57 16 30 H 0.13 3.08 3.40 -51.93 -0.18 2.90 16 31 H 0.05 0.94 7.40 -51.93 -0.38 0.56 16 32 H 0.06 1.16 7.14 -51.93 -0.37 0.79 16 33 H 0.20 1.76 7.35 -52.49 -0.39 1.38 16 34 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.09 0.60 8.06 -51.93 -0.42 0.18 16 36 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.11 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.08 0.47 6.21 -51.93 -0.32 0.15 16 39 H 0.11 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 41 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 42 H 0.05 1.40 6.15 -51.93 -0.32 1.08 16 43 H 0.04 1.06 7.64 -51.93 -0.40 0.67 16 44 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 45 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 365.10 15.07 5.50 5.50 Total: -1.00 -32.01 365.10 -6.55 -38.56 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -6.49 Total: 0.50 kcal Atomic # 6 Polarization: 11.45 SS G_CDS: -0.89 Total: 10.55 kcal Atomic # 7 Polarization: -59.03 SS G_CDS: 0.67 Total: -58.36 kcal Atomic # 8 Polarization: -13.14 SS G_CDS: -0.32 Total: -13.46 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.01 -6.55 -38.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033565372.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.093 kcal (2) G-P(sol) polarization free energy of solvation -32.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds