Wall clock time and date at job start Tue Mar 31 2020 18:24:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34779 * 120.00126 * 2 1 4 4 O 1.21590 * 119.99997 * 185.27062 * 3 2 1 5 5 C 1.47524 * 119.99662 * 5.27004 * 3 2 1 6 6 C 1.36597 * 125.76719 * 185.17585 * 5 3 2 7 7 N 1.34814 * 106.83895 * 179.97438 * 6 5 3 8 8 C 1.46508 * 126.59482 * 179.97438 * 7 6 5 9 9 H 1.08996 * 110.43592 * 154.30055 * 8 7 6 10 10 C 1.54809 * 110.48651 * 276.84876 * 8 7 6 11 11 C 1.55351 * 101.93026 * 97.82513 * 10 8 7 12 12 O 1.44374 * 103.50450 * 37.05086 * 11 10 8 13 13 C 1.43752 * 106.97306 * 319.90983 * 12 11 10 14 14 N 1.40204 * 106.81143 * 0.02562 * 7 6 5 15 15 N 1.28764 * 108.36829 * 359.74297 * 14 7 6 16 16 C 1.46499 * 119.99870 * 179.97438 * 2 1 3 17 17 H 1.09000 * 110.88525 * 189.58022 * 16 2 1 18 18 C 1.55166 * 111.00341 * 65.70492 * 16 2 1 19 19 C 1.54321 * 102.94094 * 277.42937 * 18 16 2 20 20 N 1.47028 * 107.27175 * 337.80374 * 19 18 16 21 21 C 1.36934 * 125.64821 * 178.98778 * 20 19 18 22 22 H 1.08004 * 119.99857 * 174.97305 * 21 20 19 23 23 C 1.38811 * 120.00128 * 354.97449 * 21 20 19 24 24 N 1.31613 * 119.99905 * 5.14527 * 23 21 20 25 25 Si 1.86802 * 120.00137 * 185.14818 * 23 21 20 26 26 H 1.48503 * 109.47082 * 94.99554 * 25 23 21 27 27 H 1.48494 * 109.47214 * 214.99773 * 25 23 21 28 28 H 1.48507 * 109.46872 * 335.00073 * 25 23 21 29 29 C 1.47422 * 108.70256 * 358.94576 * 20 19 18 30 30 H 1.08998 * 109.47362 * 175.09653 * 1 2 3 31 31 H 1.09001 * 109.46995 * 55.09926 * 1 2 3 32 32 H 1.08998 * 109.47111 * 295.10189 * 1 2 3 33 33 H 1.07997 * 126.58105 * 359.97438 * 6 5 3 34 34 H 1.09000 * 110.90741 * 215.99177 * 10 8 7 35 35 H 1.08994 * 110.91328 * 339.59482 * 10 8 7 36 36 H 1.09000 * 110.63755 * 278.52722 * 11 10 8 37 37 H 1.09003 * 110.71708 * 155.60554 * 11 10 8 38 38 H 1.08999 * 109.87447 * 267.08538 * 13 12 11 39 39 H 1.08999 * 110.00070 * 146.01254 * 13 12 11 40 40 H 1.08999 * 110.71717 * 35.78795 * 18 16 2 41 41 H 1.08999 * 110.71883 * 159.06446 * 18 16 2 42 42 H 1.08998 * 109.88788 * 97.22025 * 19 18 16 43 43 H 1.09000 * 109.88451 * 218.23622 * 19 18 16 44 44 H 0.97003 * 119.99918 * 179.97438 * 24 23 21 45 45 H 1.09003 * 110.36511 * 265.29050 * 29 20 19 46 46 H 1.08997 * 110.37023 * 142.96468 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3510 1.1694 -0.0967 5 6 1.4059 2.4421 0.1174 6 6 1.9552 3.6897 0.0306 7 7 0.9482 4.5717 0.1908 8 6 1.0560 6.0327 0.1747 9 1 0.1083 6.4810 -0.1233 10 6 1.4915 6.5592 1.5639 11 6 3.0208 6.7513 1.3695 12 8 3.1309 7.2270 0.0108 13 6 2.1857 6.4797 -0.7732 14 7 -0.2218 3.8220 0.3768 15 7 0.0841 2.5724 0.3226 16 6 2.1975 -1.2687 0.0006 17 1 3.2614 -1.1031 0.1700 18 6 1.9594 -2.0490 -1.3194 19 6 0.6135 -2.7592 -1.0630 20 7 0.4355 -2.8445 0.3939 21 6 -0.6445 -3.3896 1.0354 22 1 -0.6451 -3.4782 2.1118 23 6 -1.7385 -3.8284 0.3023 24 7 -1.6975 -3.8145 -1.0132 25 14 -3.2690 -4.4385 1.1826 26 1 -4.2455 -3.3265 1.3059 27 1 -3.8777 -5.5480 0.4058 28 1 -2.9003 -4.9257 2.5362 29 6 1.6128 -2.2469 1.0498 30 1 -0.3634 -1.0239 -0.0878 31 1 -0.3633 0.5880 -0.8428 32 1 -0.3633 0.4360 0.9306 33 1 2.9963 3.9246 -0.1346 34 1 1.0051 7.5080 1.7903 35 1 1.2858 5.8231 2.3409 36 1 3.5453 5.8032 1.4880 37 1 3.4082 7.4928 2.0683 38 1 2.6726 5.6065 -1.2074 39 1 1.7782 7.1085 -1.5649 40 1 1.8792 -1.3637 -2.1632 41 1 2.7538 -2.7764 -1.4860 42 1 -0.1999 -2.1821 -1.5026 43 1 0.6340 -3.7596 -1.4954 44 1 -2.4619 -4.1214 -1.5255 45 1 2.3420 -3.0186 1.2967 46 1 1.3132 -1.7059 1.9473 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033565372.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:36 Heat of formation + Delta-G solvation = 57.308633 kcal Electronic energy + Delta-G solvation = -29749.446368 eV Core-core repulsion = 25677.770474 eV Total energy + Delta-G solvation = -4071.675894 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.45099 -41.10261 -40.39250 -38.98823 -36.02196 -35.51538 -34.00286 -32.34209 -31.80853 -31.01899 -30.03241 -29.40694 -27.56412 -26.40005 -25.32276 -24.40172 -23.72355 -22.03722 -21.97539 -21.92215 -20.31798 -18.98066 -18.83496 -17.89302 -17.70449 -17.32437 -17.01800 -16.64946 -16.32793 -16.10459 -15.93293 -15.74853 -15.55242 -15.46771 -14.59992 -14.29519 -14.17543 -13.82487 -13.67630 -13.55722 -13.42865 -13.39149 -13.23959 -12.98547 -12.79580 -12.77990 -12.53246 -12.31143 -12.30798 -12.22339 -11.98915 -11.83457 -11.74804 -11.52625 -11.36551 -10.97759 -10.85362 -10.66228 -10.42981 -9.62877 -8.81229 -7.81086 -5.15702 0.02227 0.57489 0.90337 1.49646 1.51216 1.58990 1.95871 2.14968 2.52695 2.69658 3.04197 3.19543 3.32524 3.38806 3.48041 3.65884 3.68062 3.83506 3.85772 3.91705 4.00749 4.10248 4.20464 4.31967 4.42073 4.52508 4.54810 4.64252 4.68280 4.69963 4.74658 4.77470 4.81839 4.87535 4.94414 5.01713 5.07730 5.29926 5.35518 5.51463 5.62230 5.66773 5.69480 5.81718 6.22132 6.39491 6.79663 7.06849 7.14000 7.79295 8.43852 9.28743 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.019948 B = 0.002790 C = 0.002584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.332493 B =10033.216111 C =10832.590886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.577 5.577 3 C 0.597 3.403 4 O -0.568 6.568 5 C -0.115 4.115 6 C 0.108 3.892 7 N -0.341 5.341 8 C 0.107 3.893 9 H 0.149 0.851 10 C -0.157 4.157 11 C 0.037 3.963 12 O -0.379 6.379 13 C 0.039 3.961 14 N -0.083 5.083 15 N -0.218 5.218 16 C 0.133 3.867 17 H 0.117 0.883 18 C -0.140 4.140 19 C 0.185 3.815 20 N -0.615 5.615 21 C -0.236 4.236 22 H 0.080 0.920 23 C -0.056 4.056 24 N -0.945 5.945 25 Si 0.970 3.030 26 H -0.289 1.289 27 H -0.297 1.297 28 H -0.271 1.271 29 C 0.126 3.874 30 H 0.101 0.899 31 H 0.048 0.952 32 H 0.055 0.945 33 H 0.227 0.773 34 H 0.125 0.875 35 H 0.084 0.916 36 H 0.064 0.936 37 H 0.121 0.879 38 H 0.072 0.928 39 H 0.130 0.870 40 H 0.070 0.930 41 H 0.090 0.910 42 H 0.025 0.975 43 H 0.006 0.994 44 H 0.246 0.754 45 H 0.047 0.953 46 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.502 24.357 2.286 26.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.306 5.306 3 C 0.385 3.615 4 O -0.447 6.447 5 C -0.254 4.254 6 C -0.049 4.049 7 N -0.127 5.127 8 C 0.006 3.994 9 H 0.167 0.833 10 C -0.196 4.196 11 C -0.039 4.039 12 O -0.298 6.298 13 C -0.039 4.039 14 N -0.063 5.063 15 N -0.091 5.091 16 C 0.029 3.971 17 H 0.134 0.866 18 C -0.180 4.180 19 C 0.060 3.940 20 N -0.342 5.342 21 C -0.365 4.365 22 H 0.098 0.902 23 C -0.250 4.250 24 N -0.594 5.594 25 Si 0.799 3.201 26 H -0.216 1.216 27 H -0.224 1.224 28 H -0.195 1.195 29 C 0.000 4.000 30 H 0.119 0.881 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.244 0.756 34 H 0.144 0.856 35 H 0.102 0.898 36 H 0.082 0.918 37 H 0.139 0.861 38 H 0.090 0.910 39 H 0.147 0.853 40 H 0.088 0.912 41 H 0.108 0.892 42 H 0.043 0.957 43 H 0.025 0.975 44 H 0.056 0.944 45 H 0.065 0.935 46 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 8.543 24.513 2.360 26.066 hybrid contribution -0.409 -0.949 0.113 1.040 sum 8.134 23.564 2.473 25.051 Atomic orbital electron populations 1.22091 0.77809 1.05140 1.00598 1.47586 1.07941 1.04961 1.70148 1.17074 0.85849 0.82364 0.76239 1.90727 1.13371 1.87274 1.53377 1.21390 0.90730 0.95140 1.18168 1.23483 0.97384 0.87696 0.96384 1.50842 1.05973 1.08761 1.47112 1.23439 1.04636 0.72109 0.99224 0.83341 1.23689 0.97250 1.04199 0.94448 1.23906 0.94832 1.01253 0.83878 1.88976 1.59581 1.60970 1.20267 1.23725 0.87891 0.98195 0.94118 1.81981 1.05596 0.95964 1.22722 1.74961 1.13179 1.10602 1.10351 1.22232 0.96587 0.82111 0.96185 0.86559 1.23134 0.98804 0.99133 0.96879 1.20963 0.92679 0.96307 0.84057 1.44767 1.18381 1.68953 1.02072 1.19327 0.93000 1.32731 0.91428 0.90196 1.25504 1.00797 1.02436 0.96257 1.70164 1.30411 1.53780 1.05003 0.85185 0.80062 0.77089 0.77752 1.21569 1.22430 1.19548 1.22004 0.89534 0.93780 0.94679 0.88052 0.93373 0.92666 0.75638 0.85635 0.89776 0.91808 0.86104 0.90959 0.85265 0.91155 0.89199 0.95701 0.97527 0.94439 0.93507 0.93827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.50 8.12 127.77 1.04 4.53 16 2 N -0.58 -21.40 2.91 -818.58 -2.38 -23.78 16 3 C 0.60 20.60 7.66 86.69 0.66 21.27 16 4 O -0.57 -20.48 16.30 -4.00 -0.07 -20.54 16 5 C -0.11 -3.42 6.72 40.82 0.27 -3.14 16 6 C 0.11 2.25 10.02 83.85 0.84 3.09 16 7 N -0.34 -6.33 3.58 -321.85 -1.15 -7.48 16 8 C 0.11 1.06 4.18 45.98 0.19 1.25 16 9 H 0.15 1.02 8.14 -2.39 -0.02 1.00 16 10 C -0.16 -1.18 6.91 32.02 0.22 -0.96 16 11 C 0.04 0.30 7.73 72.79 0.56 0.86 16 12 O -0.38 -4.33 11.52 -148.98 -1.72 -6.05 16 13 C 0.04 0.33 7.27 72.35 0.53 0.85 16 14 N -0.08 -2.25 13.78 37.02 0.51 -1.74 16 15 N -0.22 -6.99 8.98 -49.99 -0.45 -7.44 16 16 C 0.13 4.86 3.62 46.39 0.17 5.03 16 17 H 0.12 3.93 7.11 -2.39 -0.02 3.91 16 18 C -0.14 -5.29 6.55 31.78 0.21 -5.08 16 19 C 0.18 8.90 4.32 86.73 0.37 9.28 16 20 N -0.61 -30.38 1.96 -691.99 -1.36 -31.73 16 21 C -0.24 -12.82 9.99 84.03 0.84 -11.98 16 22 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16 23 C -0.06 -3.13 5.48 84.86 0.47 -2.66 16 24 N -0.94 -55.44 10.34 21.65 0.22 -55.22 16 25 Si 0.97 45.43 29.56 68.60 2.03 47.46 16 26 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 27 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 28 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 29 C 0.13 5.11 6.41 86.86 0.56 5.67 16 30 H 0.10 4.84 3.40 -2.39 -0.01 4.83 16 31 H 0.05 1.91 7.40 -2.39 -0.02 1.89 16 32 H 0.05 2.23 7.14 -2.39 -0.02 2.21 16 33 H 0.23 3.34 7.35 -2.91 -0.02 3.32 16 34 H 0.13 0.44 8.14 -2.39 -0.02 0.42 16 35 H 0.08 0.87 8.06 -2.39 -0.02 0.85 16 36 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 37 H 0.12 0.58 8.14 -2.39 -0.02 0.56 16 38 H 0.07 0.68 6.21 -2.39 -0.01 0.67 16 39 H 0.13 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 41 H 0.09 3.01 8.14 -2.39 -0.02 2.99 16 42 H 0.02 1.34 6.15 -2.39 -0.01 1.33 16 43 H 0.01 0.35 7.64 -2.39 -0.02 0.34 16 44 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 45 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 46 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -70.45 365.10 3.57 -66.88 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: 1.00 Total: 11.64 kcal Atomic # 6 Polarization: 21.08 SS G_CDS: 6.93 Total: 28.01 kcal Atomic # 7 Polarization: -122.79 SS G_CDS: -4.61 Total: -127.40 kcal Atomic # 8 Polarization: -24.81 SS G_CDS: -1.78 Total: -26.59 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Total: -70.45 3.57 -66.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033565372.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.185 kcal (2) G-P(sol) polarization free energy of solvation -70.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds