Wall clock time and date at job start Tue Mar 31 2020 18:24:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34770 * 120.00206 * 2 1 4 4 O 1.21598 * 120.00032 * 183.43728 * 3 2 1 5 5 C 1.47526 * 120.00024 * 3.44160 * 3 2 1 6 6 C 1.36597 * 125.76883 * 173.20368 * 5 3 2 7 7 N 1.34811 * 106.83786 * 180.13414 * 6 5 3 8 8 C 1.46501 * 126.59495 * 179.90963 * 7 6 5 9 9 H 1.08997 * 110.98902 * 208.90632 * 8 7 6 10 10 C 1.55308 * 111.12850 * 84.70860 * 8 7 6 11 11 C 1.54379 * 102.25271 * 207.94957 * 10 8 7 12 12 O 1.43240 * 107.58961 * 21.35512 * 11 10 8 13 13 C 1.43641 * 109.97215 * 1.71370 * 12 11 10 14 14 N 1.40208 * 106.81061 * 359.64139 * 7 6 5 15 15 N 1.28757 * 108.36882 * 0.23238 * 14 7 6 16 16 C 1.46494 * 119.99520 * 179.97438 * 2 1 3 17 17 H 1.09000 * 110.88739 * 179.29600 * 16 2 1 18 18 C 1.55161 * 111.00979 * 303.18008 * 16 2 1 19 19 C 1.54323 * 102.94501 * 153.57461 * 18 16 2 20 20 N 1.47025 * 107.26928 * 337.80979 * 19 18 16 21 21 C 1.36934 * 125.64324 * 178.99391 * 20 19 18 22 22 H 1.08010 * 120.00006 * 179.97438 * 21 20 19 23 23 C 1.38818 * 120.00586 * 359.97408 * 21 20 19 24 24 N 1.31614 * 119.99310 * 0.02562 * 23 21 20 25 25 Si 1.86792 * 120.00099 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47302 * 90.00414 * 25 23 21 27 27 H 1.48503 * 109.47104 * 210.00131 * 25 23 21 28 28 H 1.48493 * 109.47587 * 330.00132 * 25 23 21 29 29 C 1.47462 * 108.72601 * 358.97304 * 20 19 18 30 30 H 1.08993 * 109.47339 * 83.96100 * 1 2 3 31 31 H 1.09000 * 109.47321 * 203.96518 * 1 2 3 32 32 H 1.09012 * 109.46855 * 323.96431 * 1 2 3 33 33 H 1.08002 * 126.58234 * 0.02562 * 6 5 3 34 34 H 1.08996 * 110.84791 * 89.75839 * 10 8 7 35 35 H 1.09007 * 110.84483 * 326.13884 * 10 8 7 36 36 H 1.09000 * 109.82689 * 261.84076 * 11 10 8 37 37 H 1.09006 * 109.90338 * 140.91255 * 11 10 8 38 38 H 1.09005 * 110.31393 * 94.48595 * 13 12 11 39 39 H 1.08994 * 110.31024 * 216.65761 * 13 12 11 40 40 H 1.08993 * 110.72102 * 271.94321 * 18 16 2 41 41 H 1.09004 * 110.71520 * 35.21588 * 18 16 2 42 42 H 1.08999 * 109.88314 * 97.22297 * 19 18 16 43 43 H 1.09001 * 109.88387 * 218.39103 * 19 18 16 44 44 H 0.97008 * 119.99704 * 179.97438 * 24 23 21 45 45 H 1.08996 * 110.34899 * 265.25584 * 29 20 19 46 46 H 1.09001 * 110.40449 * 142.91377 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3533 1.1680 -0.0631 5 6 1.4033 2.4436 0.0767 6 6 1.9643 3.6813 0.2161 7 7 0.9499 4.5686 0.2468 8 6 1.0651 6.0224 0.3858 9 1 0.1844 6.4389 0.8746 10 6 1.3138 6.6984 -0.9902 11 6 2.0940 7.9703 -0.5941 12 8 2.6721 7.7394 0.6960 13 6 2.3606 6.4101 1.1424 14 7 -0.2364 3.8331 0.1138 15 7 0.0683 2.5859 0.0162 16 6 2.1974 -1.2687 0.0006 17 1 3.2736 -1.0962 -0.0120 18 6 1.7890 -2.1463 1.2133 19 6 2.0702 -3.5790 0.7135 20 7 2.0609 -3.5384 -0.7561 21 6 2.2896 -4.6038 -1.5853 22 1 2.2601 -4.4704 -2.6567 23 6 2.5594 -5.8555 -1.0490 24 7 2.5949 -6.0182 0.2565 25 14 2.8706 -7.3090 -2.1803 26 1 4.3219 -7.3999 -2.4816 27 1 2.4241 -8.5590 -1.5144 28 1 2.1133 -7.1237 -3.4441 29 6 1.7641 -2.1606 -1.1897 30 1 -0.3633 0.1081 -1.0219 31 1 -0.3634 -0.9391 0.4174 32 1 -0.3633 0.8311 0.6046 33 1 3.0182 3.9057 0.2896 34 1 0.3706 6.9561 -1.4719 35 1 1.9171 6.0579 -1.6336 36 1 1.4145 8.8214 -0.5478 37 1 2.8811 8.1648 -1.3226 38 1 3.1685 5.7253 0.8847 39 1 2.1867 6.4034 2.2183 40 1 2.4040 -1.9133 2.0824 41 1 0.7310 -2.0186 1.4426 42 1 3.0458 -3.9108 1.0690 43 1 1.2936 -4.2554 1.0706 44 1 2.7830 -6.8929 0.6314 45 1 0.6974 -2.0451 -1.3816 46 1 2.3400 -1.9101 -2.0807 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033565375.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:40 Heat of formation + Delta-G solvation = 73.811274 kcal Electronic energy + Delta-G solvation = -28868.283719 eV Core-core repulsion = 24797.323433 eV Total energy + Delta-G solvation = -4070.960286 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.63255 -40.18025 -39.50487 -37.26820 -35.33132 -34.63601 -32.17402 -31.81886 -30.98121 -29.63185 -29.11484 -27.53132 -26.58298 -25.00982 -24.28310 -23.41065 -22.96412 -21.48595 -20.79500 -20.08295 -19.18524 -18.13651 -17.41468 -16.93092 -16.78871 -16.23590 -16.17593 -15.82490 -15.40540 -14.86736 -14.68921 -14.59386 -14.31531 -14.06982 -13.87457 -13.48454 -12.90334 -12.82269 -12.76946 -12.62082 -12.39321 -12.34356 -12.24357 -12.03631 -11.80380 -11.68844 -11.01611 -10.91967 -10.82918 -10.76489 -10.60351 -10.34852 -10.27436 -10.07947 -9.87172 -9.76492 -9.65404 -9.55412 -8.59311 -8.29563 -6.81113 -5.68503 -3.02351 0.77850 1.46319 1.54949 2.97595 3.07436 3.26748 3.43179 3.47888 3.49508 3.50209 3.65032 3.91740 4.00696 4.17540 4.27621 4.43688 4.53852 4.58778 4.74841 4.84900 4.98776 5.02072 5.03687 5.15753 5.31306 5.41119 5.48076 5.52103 5.68667 5.71781 5.83532 5.90767 5.93629 6.10865 6.20361 6.25317 6.34988 6.54303 6.63966 6.73753 6.98444 7.53546 7.58394 7.63547 7.68569 7.84878 8.23616 8.28995 9.24210 9.84085 10.49370 11.43130 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.033616 B = 0.002074 C = 0.002060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.739190 B =13494.759772 C =13590.006465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.582 5.582 3 C 0.597 3.403 4 O -0.542 6.542 5 C -0.085 4.085 6 C 0.088 3.912 7 N -0.355 5.355 8 C 0.116 3.884 9 H 0.133 0.867 10 C -0.167 4.167 11 C 0.052 3.948 12 O -0.369 6.369 13 C 0.045 3.955 14 N -0.065 5.065 15 N -0.196 5.196 16 C 0.123 3.877 17 H 0.108 0.892 18 C -0.153 4.153 19 C 0.180 3.820 20 N -0.603 5.603 21 C -0.227 4.227 22 H 0.078 0.922 23 C -0.009 4.009 24 N -0.922 5.922 25 Si 0.913 3.087 26 H -0.289 1.289 27 H -0.291 1.291 28 H -0.281 1.281 29 C 0.132 3.868 30 H 0.057 0.943 31 H 0.075 0.925 32 H 0.091 0.909 33 H 0.204 0.796 34 H 0.100 0.900 35 H 0.090 0.910 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.106 0.894 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.049 0.951 43 H 0.046 0.954 44 H 0.252 0.748 45 H 0.024 0.976 46 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.165 29.037 1.941 29.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.312 5.312 3 C 0.382 3.618 4 O -0.419 6.419 5 C -0.223 4.223 6 C -0.068 4.068 7 N -0.140 5.140 8 C 0.013 3.987 9 H 0.151 0.849 10 C -0.205 4.205 11 C -0.025 4.025 12 O -0.287 6.287 13 C -0.033 4.033 14 N -0.044 5.044 15 N -0.070 5.070 16 C 0.019 3.981 17 H 0.126 0.874 18 C -0.192 4.192 19 C 0.055 3.945 20 N -0.330 5.330 21 C -0.355 4.355 22 H 0.096 0.904 23 C -0.205 4.205 24 N -0.570 5.570 25 Si 0.744 3.256 26 H -0.216 1.216 27 H -0.217 1.217 28 H -0.207 1.207 29 C 0.004 3.996 30 H 0.076 0.924 31 H 0.093 0.907 32 H 0.109 0.891 33 H 0.221 0.779 34 H 0.119 0.881 35 H 0.108 0.892 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.095 0.905 39 H 0.124 0.876 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.067 0.933 43 H 0.064 0.936 44 H 0.063 0.937 45 H 0.042 0.958 46 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -4.896 29.043 1.967 29.519 hybrid contribution 0.929 -0.890 -0.673 1.452 sum -3.966 28.154 1.294 28.461 Atomic orbital electron populations 1.22145 0.78633 1.03662 1.02637 1.47628 1.07704 1.05364 1.70509 1.16787 0.86059 0.81765 0.77177 1.90805 1.12663 1.86708 1.51771 1.21546 0.89859 0.95227 1.15702 1.23287 0.96490 0.88676 0.98333 1.50236 1.06323 1.07624 1.49864 1.23311 1.02359 0.74703 0.98337 0.84886 1.23604 1.03160 0.97495 0.96279 1.23173 0.97267 0.96860 0.85200 1.88531 1.75797 1.30052 1.34339 1.23758 0.93882 0.85468 1.00203 1.82053 1.03729 0.96743 1.21900 1.74827 1.12727 1.09182 1.10278 1.22533 0.97368 0.80718 0.97471 0.87409 1.23270 1.00617 0.98462 0.96883 1.21149 1.00985 0.89095 0.83292 1.44396 1.83415 1.03102 1.02099 1.19058 1.41114 0.86287 0.89031 0.90384 1.24813 1.02022 0.97614 0.96059 1.69959 1.55476 1.22458 1.09080 0.86093 0.77935 0.82127 0.79448 1.21591 1.21700 1.20708 1.21758 0.97480 0.85821 0.94514 0.92427 0.90665 0.89138 0.77918 0.88102 0.89173 0.90040 0.90130 0.90488 0.87633 0.91836 0.91872 0.93280 0.93612 0.93740 0.95834 0.94030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.02 8.25 59.85 0.49 1.51 16 2 N -0.58 -9.52 2.91 -172.70 -0.50 -10.03 16 3 C 0.60 9.58 7.67 -12.48 -0.10 9.48 16 4 O -0.54 -10.01 16.25 5.28 0.09 -9.92 16 5 C -0.08 -1.10 6.69 -83.55 -0.56 -1.65 16 6 C 0.09 0.84 10.39 -16.84 -0.17 0.66 16 7 N -0.35 -2.96 3.70 -52.38 -0.19 -3.16 16 8 C 0.12 0.58 4.28 -65.68 -0.28 0.29 16 9 H 0.13 0.51 8.14 -51.93 -0.42 0.09 16 10 C -0.17 -0.65 6.72 -24.78 -0.17 -0.82 16 11 C 0.05 0.19 7.79 37.88 0.30 0.49 16 12 O -0.37 -2.23 11.36 -35.23 -0.40 -2.63 16 13 C 0.04 0.21 7.16 38.19 0.27 0.48 16 14 N -0.07 -0.74 13.78 60.35 0.83 0.09 16 15 N -0.20 -2.54 8.82 32.85 0.29 -2.25 16 16 C 0.12 2.34 3.45 -65.78 -0.23 2.12 16 17 H 0.11 2.24 7.01 -51.93 -0.36 1.88 16 18 C -0.15 -2.95 6.49 -24.89 -0.16 -3.11 16 19 C 0.18 4.41 5.37 -3.06 -0.02 4.40 16 20 N -0.60 -15.71 3.40 -170.03 -0.58 -16.29 16 21 C -0.23 -6.42 10.28 -15.06 -0.15 -6.57 16 22 H 0.08 2.14 7.83 -52.48 -0.41 1.73 16 23 C -0.01 -0.26 5.49 -17.43 -0.10 -0.35 16 24 N -0.92 -27.30 10.31 55.49 0.57 -26.73 16 25 Si 0.91 22.37 29.55 -169.99 -5.02 17.35 16 26 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 27 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 28 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 29 C 0.13 2.84 6.81 -2.50 -0.02 2.82 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.07 1.06 6.27 -51.93 -0.33 0.74 16 32 H 0.09 1.19 5.33 -51.92 -0.28 0.92 16 33 H 0.20 1.40 6.84 -52.49 -0.36 1.04 16 34 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 37 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 38 H 0.08 0.33 6.28 -51.93 -0.33 0.00 16 39 H 0.11 0.39 8.14 -51.93 -0.42 -0.04 16 40 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.06 1.12 6.27 -51.93 -0.33 0.79 16 42 H 0.05 1.33 7.38 -51.93 -0.38 0.95 16 43 H 0.05 1.23 7.50 -51.93 -0.39 0.84 16 44 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 45 H 0.02 0.50 7.14 -51.93 -0.37 0.13 16 46 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 LS Contribution 367.68 15.07 5.54 5.54 Total: -1.00 -34.23 367.68 -6.73 -40.97 By element: Atomic # 1 Polarization: 3.77 SS G_CDS: -6.47 Total: -2.70 kcal Atomic # 6 Polarization: 10.63 SS G_CDS: -0.89 Total: 9.74 kcal Atomic # 7 Polarization: -58.77 SS G_CDS: 0.42 Total: -58.35 kcal Atomic # 8 Polarization: -12.24 SS G_CDS: -0.31 Total: -12.55 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.23 -6.73 -40.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033565375.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.779 kcal (2) G-P(sol) polarization free energy of solvation -34.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds