Wall clock time and date at job start Tue Mar 31 2020 18:24:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34770 * 120.00206 * 2 1 4 4 O 1.21598 * 120.00032 * 183.43728 * 3 2 1 5 5 C 1.47526 * 120.00024 * 3.44160 * 3 2 1 6 6 C 1.36597 * 125.76883 * 173.20368 * 5 3 2 7 7 N 1.34811 * 106.83786 * 180.13414 * 6 5 3 8 8 C 1.46501 * 126.59495 * 179.90963 * 7 6 5 9 9 H 1.08997 * 110.98902 * 208.90632 * 8 7 6 10 10 C 1.55308 * 111.12850 * 84.70860 * 8 7 6 11 11 C 1.54379 * 102.25271 * 207.94957 * 10 8 7 12 12 O 1.43240 * 107.58961 * 21.35512 * 11 10 8 13 13 C 1.43641 * 109.97215 * 1.71370 * 12 11 10 14 14 N 1.40208 * 106.81061 * 359.64139 * 7 6 5 15 15 N 1.28757 * 108.36882 * 0.23238 * 14 7 6 16 16 C 1.46494 * 119.99520 * 179.97438 * 2 1 3 17 17 H 1.09000 * 110.88739 * 179.29600 * 16 2 1 18 18 C 1.55161 * 111.00979 * 303.18008 * 16 2 1 19 19 C 1.54323 * 102.94501 * 153.57461 * 18 16 2 20 20 N 1.47025 * 107.26928 * 337.80979 * 19 18 16 21 21 C 1.36934 * 125.64324 * 178.99391 * 20 19 18 22 22 H 1.08010 * 120.00006 * 179.97438 * 21 20 19 23 23 C 1.38818 * 120.00586 * 359.97408 * 21 20 19 24 24 N 1.31614 * 119.99310 * 0.02562 * 23 21 20 25 25 Si 1.86792 * 120.00099 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47302 * 90.00414 * 25 23 21 27 27 H 1.48503 * 109.47104 * 210.00131 * 25 23 21 28 28 H 1.48493 * 109.47587 * 330.00132 * 25 23 21 29 29 C 1.47462 * 108.72601 * 358.97304 * 20 19 18 30 30 H 1.08993 * 109.47339 * 83.96100 * 1 2 3 31 31 H 1.09000 * 109.47321 * 203.96518 * 1 2 3 32 32 H 1.09012 * 109.46855 * 323.96431 * 1 2 3 33 33 H 1.08002 * 126.58234 * 0.02562 * 6 5 3 34 34 H 1.08996 * 110.84791 * 89.75839 * 10 8 7 35 35 H 1.09007 * 110.84483 * 326.13884 * 10 8 7 36 36 H 1.09000 * 109.82689 * 261.84076 * 11 10 8 37 37 H 1.09006 * 109.90338 * 140.91255 * 11 10 8 38 38 H 1.09005 * 110.31393 * 94.48595 * 13 12 11 39 39 H 1.08994 * 110.31024 * 216.65761 * 13 12 11 40 40 H 1.08993 * 110.72102 * 271.94321 * 18 16 2 41 41 H 1.09004 * 110.71520 * 35.21588 * 18 16 2 42 42 H 1.08999 * 109.88314 * 97.22297 * 19 18 16 43 43 H 1.09001 * 109.88387 * 218.39103 * 19 18 16 44 44 H 0.97008 * 119.99704 * 179.97438 * 24 23 21 45 45 H 1.08996 * 110.34899 * 265.25584 * 29 20 19 46 46 H 1.09001 * 110.40449 * 142.91377 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3533 1.1680 -0.0631 5 6 1.4033 2.4436 0.0767 6 6 1.9643 3.6813 0.2161 7 7 0.9499 4.5686 0.2468 8 6 1.0651 6.0224 0.3858 9 1 0.1844 6.4389 0.8746 10 6 1.3138 6.6984 -0.9902 11 6 2.0940 7.9703 -0.5941 12 8 2.6721 7.7394 0.6960 13 6 2.3606 6.4101 1.1424 14 7 -0.2364 3.8331 0.1138 15 7 0.0683 2.5859 0.0162 16 6 2.1974 -1.2687 0.0006 17 1 3.2736 -1.0962 -0.0120 18 6 1.7890 -2.1463 1.2133 19 6 2.0702 -3.5790 0.7135 20 7 2.0609 -3.5384 -0.7561 21 6 2.2896 -4.6038 -1.5853 22 1 2.2601 -4.4704 -2.6567 23 6 2.5594 -5.8555 -1.0490 24 7 2.5949 -6.0182 0.2565 25 14 2.8706 -7.3090 -2.1803 26 1 4.3219 -7.3999 -2.4816 27 1 2.4241 -8.5590 -1.5144 28 1 2.1133 -7.1237 -3.4441 29 6 1.7641 -2.1606 -1.1897 30 1 -0.3633 0.1081 -1.0219 31 1 -0.3634 -0.9391 0.4174 32 1 -0.3633 0.8311 0.6046 33 1 3.0182 3.9057 0.2896 34 1 0.3706 6.9561 -1.4719 35 1 1.9171 6.0579 -1.6336 36 1 1.4145 8.8214 -0.5478 37 1 2.8811 8.1648 -1.3226 38 1 3.1685 5.7253 0.8847 39 1 2.1867 6.4034 2.2183 40 1 2.4040 -1.9133 2.0824 41 1 0.7310 -2.0186 1.4426 42 1 3.0458 -3.9108 1.0690 43 1 1.2936 -4.2554 1.0706 44 1 2.7830 -6.8929 0.6314 45 1 0.6974 -2.0451 -1.3816 46 1 2.3400 -1.9101 -2.0807 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033565375.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:39 Heat of formation + Delta-G solvation = 49.782658 kcal Electronic energy + Delta-G solvation = -28869.325678 eV Core-core repulsion = 24797.323433 eV Total energy + Delta-G solvation = -4072.002245 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.45801 -41.01844 -40.41745 -38.91669 -36.43144 -35.72515 -34.06029 -32.40522 -31.93466 -31.00059 -30.03355 -29.14826 -27.85887 -26.61566 -25.34563 -24.42055 -23.39214 -22.11915 -22.07978 -21.93441 -20.47928 -19.02312 -18.92524 -17.94111 -17.78436 -17.30558 -17.10718 -16.69989 -16.31129 -16.12314 -15.95469 -15.81954 -15.49186 -15.14970 -14.70793 -14.48293 -14.22999 -14.06785 -13.95311 -13.88509 -13.70735 -13.53599 -13.38943 -12.91625 -12.85021 -12.73244 -12.69999 -12.33653 -12.16737 -12.07061 -12.02367 -11.96922 -11.79325 -11.46518 -11.34535 -11.16749 -10.71519 -10.67468 -10.44793 -9.67750 -8.91096 -7.84973 -5.21690 0.00221 0.53688 0.81154 1.46854 1.49307 1.57770 1.82245 2.11581 2.50865 2.63509 2.96080 3.18128 3.25582 3.33487 3.44556 3.66852 3.68502 3.81083 3.87732 3.90033 3.96873 4.05860 4.13327 4.18989 4.32346 4.36750 4.53722 4.57298 4.59673 4.67193 4.73382 4.78591 4.79796 4.83829 4.91774 4.98053 5.07079 5.21177 5.29920 5.43336 5.52759 5.63025 5.73275 5.78583 6.18050 6.29819 6.75440 7.02251 7.09202 7.74524 8.38719 9.25233 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.033616 B = 0.002074 C = 0.002060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.739190 B =13494.759772 C =13590.006465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.585 5.585 3 C 0.598 3.402 4 O -0.572 6.572 5 C -0.110 4.110 6 C 0.109 3.891 7 N -0.338 5.338 8 C 0.110 3.890 9 H 0.149 0.851 10 C -0.161 4.161 11 C 0.051 3.949 12 O -0.388 6.388 13 C 0.045 3.955 14 N -0.075 5.075 15 N -0.211 5.211 16 C 0.140 3.860 17 H 0.090 0.910 18 C -0.135 4.135 19 C 0.189 3.811 20 N -0.624 5.624 21 C -0.244 4.244 22 H 0.082 0.918 23 C -0.066 4.066 24 N -0.950 5.950 25 Si 0.982 3.018 26 H -0.286 1.286 27 H -0.293 1.293 28 H -0.269 1.269 29 C 0.132 3.868 30 H 0.061 0.939 31 H 0.074 0.926 32 H 0.103 0.897 33 H 0.230 0.770 34 H 0.111 0.889 35 H 0.083 0.917 36 H 0.096 0.904 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.115 0.885 40 H 0.078 0.922 41 H 0.084 0.916 42 H 0.014 0.986 43 H 0.017 0.983 44 H 0.248 0.752 45 H 0.037 0.963 46 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.807 31.424 1.554 31.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.314 5.314 3 C 0.386 3.614 4 O -0.451 6.451 5 C -0.249 4.249 6 C -0.048 4.048 7 N -0.123 5.123 8 C 0.009 3.991 9 H 0.166 0.834 10 C -0.200 4.200 11 C -0.025 4.025 12 O -0.307 6.307 13 C -0.032 4.032 14 N -0.055 5.055 15 N -0.085 5.085 16 C 0.035 3.965 17 H 0.108 0.892 18 C -0.174 4.174 19 C 0.063 3.937 20 N -0.351 5.351 21 C -0.373 4.373 22 H 0.100 0.900 23 C -0.259 4.259 24 N -0.599 5.599 25 Si 0.810 3.190 26 H -0.213 1.213 27 H -0.219 1.219 28 H -0.193 1.193 29 C 0.006 3.994 30 H 0.079 0.921 31 H 0.093 0.907 32 H 0.121 0.879 33 H 0.246 0.754 34 H 0.129 0.871 35 H 0.102 0.898 36 H 0.114 0.886 37 H 0.104 0.896 38 H 0.099 0.901 39 H 0.133 0.867 40 H 0.097 0.903 41 H 0.102 0.898 42 H 0.032 0.968 43 H 0.035 0.965 44 H 0.057 0.943 45 H 0.055 0.945 46 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -5.577 31.499 1.566 32.028 hybrid contribution 1.130 -1.461 -0.576 1.935 sum -4.447 30.039 0.990 30.382 Atomic orbital electron populations 1.22226 0.77038 1.04134 1.03176 1.47589 1.08489 1.04485 1.70882 1.17117 0.85836 0.82458 0.76030 1.90784 1.14015 1.87262 1.53035 1.21187 0.90213 0.94785 1.18688 1.23602 0.97607 0.87673 0.95948 1.50408 1.05220 1.08691 1.48009 1.23669 1.03434 0.72544 0.99453 0.83383 1.23590 1.03613 0.97301 0.95448 1.23288 0.97636 0.97103 0.84498 1.88517 1.76260 1.30597 1.35336 1.23823 0.93571 0.85129 1.00708 1.81984 1.04836 0.96433 1.22226 1.74763 1.12731 1.10091 1.10869 1.22044 0.96674 0.81778 0.95969 0.89190 1.23082 1.02268 0.94796 0.97223 1.20887 0.98051 0.91800 0.82917 1.44671 1.83397 1.04431 1.02631 1.19440 1.40769 0.87340 0.89703 0.90013 1.25685 1.02296 1.00309 0.97588 1.70175 1.56380 1.22629 1.10691 0.85034 0.77718 0.78366 0.77921 1.21326 1.21891 1.19338 1.21852 0.97981 0.84297 0.95306 0.92061 0.90702 0.87894 0.75416 0.87061 0.89836 0.88618 0.89628 0.90130 0.86661 0.90300 0.89754 0.96794 0.96527 0.94267 0.94498 0.94577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.04 8.25 127.77 1.05 3.09 16 2 N -0.58 -18.59 2.91 -818.57 -2.38 -20.97 16 3 C 0.60 18.64 7.67 86.69 0.66 19.30 16 4 O -0.57 -20.82 16.25 -4.03 -0.07 -20.88 16 5 C -0.11 -2.67 6.69 40.82 0.27 -2.40 16 6 C 0.11 1.82 10.39 83.85 0.87 2.69 16 7 N -0.34 -4.79 3.70 -319.64 -1.18 -5.97 16 8 C 0.11 0.79 4.28 46.45 0.20 0.99 16 9 H 0.15 0.68 8.14 -2.39 -0.02 0.66 16 10 C -0.16 -0.83 6.72 31.86 0.21 -0.62 16 11 C 0.05 0.25 7.79 72.45 0.56 0.81 16 12 O -0.39 -3.79 11.36 -148.98 -1.69 -5.48 16 13 C 0.05 0.30 7.16 72.65 0.52 0.82 16 14 N -0.08 -1.55 13.78 37.02 0.51 -1.04 16 15 N -0.21 -5.08 8.82 -49.99 -0.44 -5.52 16 16 C 0.14 5.33 3.45 46.39 0.16 5.49 16 17 H 0.09 3.79 7.01 -2.39 -0.02 3.77 16 18 C -0.13 -5.15 6.49 31.78 0.21 -4.94 16 19 C 0.19 9.55 5.37 86.73 0.47 10.02 16 20 N -0.62 -33.19 3.40 -691.86 -2.35 -35.53 16 21 C -0.24 -14.02 10.28 84.04 0.86 -13.16 16 22 H 0.08 4.51 7.83 -2.91 -0.02 4.48 16 23 C -0.07 -3.81 5.49 84.86 0.47 -3.35 16 24 N -0.95 -57.91 10.31 21.65 0.22 -57.69 16 25 Si 0.98 46.55 29.55 68.60 2.03 48.58 16 26 H -0.29 -13.38 7.11 99.48 0.71 -12.68 16 27 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 28 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 29 C 0.13 5.71 6.81 86.85 0.59 6.30 16 30 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.07 1.99 6.27 -2.39 -0.01 1.97 16 32 H 0.10 2.54 5.33 -2.38 -0.01 2.52 16 33 H 0.23 2.52 6.84 -2.91 -0.02 2.50 16 34 H 0.11 0.37 8.14 -2.39 -0.02 0.35 16 35 H 0.08 0.58 8.14 -2.38 -0.02 0.56 16 36 H 0.10 0.20 8.14 -2.39 -0.02 0.18 16 37 H 0.09 0.34 8.14 -2.38 -0.02 0.32 16 38 H 0.08 0.47 6.28 -2.38 -0.01 0.45 16 39 H 0.12 0.54 8.14 -2.39 -0.02 0.52 16 40 H 0.08 2.78 8.14 -2.39 -0.02 2.77 16 41 H 0.08 2.88 6.27 -2.38 -0.01 2.86 16 42 H 0.01 0.79 7.38 -2.39 -0.02 0.77 16 43 H 0.02 0.92 7.50 -2.39 -0.02 0.90 16 44 H 0.25 14.65 8.31 -92.70 -0.77 13.88 16 45 H 0.04 1.52 7.14 -2.39 -0.02 1.50 16 46 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -75.27 367.68 2.77 -72.50 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: 1.01 Total: 6.96 kcal Atomic # 6 Polarization: 17.93 SS G_CDS: 7.11 Total: 25.05 kcal Atomic # 7 Polarization: -121.11 SS G_CDS: -5.62 Total: -126.73 kcal Atomic # 8 Polarization: -24.60 SS G_CDS: -1.76 Total: -26.36 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.58 kcal Total: -75.27 2.77 -72.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033565375.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.280 kcal (2) G-P(sol) polarization free energy of solvation -75.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds