Wall clock time and date at job start Tue Mar 31 2020 18:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34771 * 119.99920 * 2 1 4 4 O 1.21597 * 119.99901 * 176.19087 * 3 2 1 5 5 C 1.47520 * 120.00233 * 356.18678 * 3 2 1 6 6 C 1.36602 * 125.77108 * 185.90469 * 5 3 2 7 7 N 1.34811 * 106.83905 * 179.90029 * 6 5 3 8 8 C 1.46499 * 126.59460 * 180.10801 * 7 6 5 9 9 C 1.53001 * 109.47210 * 125.27159 * 8 7 6 10 10 C 1.53004 * 117.49910 * 243.62409 * 9 8 7 11 11 C 1.52998 * 117.49927 * 175.00143 * 9 8 7 12 12 N 1.40206 * 106.81205 * 0.35399 * 7 6 5 13 13 N 1.28761 * 108.36742 * 359.77443 * 12 7 6 14 14 C 1.46500 * 119.99787 * 180.02562 * 2 1 3 15 15 H 1.09000 * 110.88210 * 183.87996 * 14 2 1 16 16 C 1.54909 * 111.00215 * 307.80020 * 14 2 1 17 17 N 1.47421 * 104.83334 * 155.08466 * 16 14 2 18 18 C 1.36935 * 125.65118 * 155.90356 * 17 16 14 19 19 H 1.08002 * 120.00174 * 0.02562 * 18 17 16 20 20 C 1.38809 * 120.00194 * 180.02562 * 18 17 16 21 21 N 1.31621 * 120.00087 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00259 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.46849 * 60.00045 * 22 20 18 24 24 H 1.48502 * 109.47326 * 179.97438 * 22 20 18 25 25 H 1.48494 * 109.47251 * 300.00126 * 22 20 18 26 26 C 1.47325 * 108.73382 * 335.71996 * 17 16 14 27 27 C 1.54319 * 107.11971 * 1.29277 * 26 17 16 28 28 H 1.08990 * 110.72488 * 263.52758 * 27 26 17 29 29 O 1.42903 * 110.71514 * 140.42896 * 27 26 17 30 30 H 1.09004 * 109.47090 * 275.72002 * 1 2 3 31 31 H 1.09005 * 109.47011 * 35.71545 * 1 2 3 32 32 H 1.09000 * 109.47187 * 155.71389 * 1 2 3 33 33 H 1.08000 * 126.57946 * 0.03443 * 6 5 3 34 34 H 1.09000 * 109.47391 * 245.26785 * 8 7 6 35 35 H 1.09000 * 109.47402 * 5.27309 * 8 7 6 36 36 H 1.09003 * 115.54983 * 29.32953 * 9 8 7 37 37 H 1.08994 * 117.50060 * 359.97438 * 10 9 8 38 38 H 1.08999 * 117.49639 * 145.02141 * 10 9 8 39 39 H 1.09011 * 117.49767 * 214.97881 * 11 9 8 40 40 H 1.08994 * 117.50148 * 0.02562 * 11 9 8 41 41 H 1.09005 * 110.36701 * 273.92265 * 16 14 2 42 42 H 1.09001 * 110.36887 * 36.13777 * 16 14 2 43 43 H 0.96998 * 120.00203 * 180.02562 * 21 20 18 44 44 H 1.09004 * 110.05783 * 241.87092 * 26 17 16 45 45 H 1.08998 * 109.85140 * 120.61208 * 26 17 16 46 46 H 0.96702 * 113.99660 * 63.84658 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3528 1.1683 0.0700 5 6 1.4038 2.4433 -0.0850 6 6 1.9661 3.6821 -0.2081 7 7 0.9517 4.5688 -0.2533 8 6 1.0682 6.0233 -0.3836 9 6 0.2419 6.4959 -1.5815 10 6 0.9934 7.1409 -2.7477 11 6 0.1385 8.0040 -1.8175 12 7 -0.2362 3.8318 -0.1459 13 7 0.0677 2.5843 -0.0485 14 6 2.1975 -1.2688 -0.0006 15 1 3.2717 -1.0973 0.0684 16 6 1.7074 -2.1933 1.1417 17 7 2.0263 -3.5583 0.6855 18 6 2.2161 -4.6464 1.4950 19 1 2.1344 -4.5429 2.5669 20 6 2.5133 -5.8826 0.9378 21 7 2.6123 -6.0090 -0.3686 22 14 2.7729 -7.3668 2.0420 23 1 1.5411 -7.6166 2.8330 24 1 3.0749 -8.5576 1.2079 25 1 3.9081 -7.1061 2.9630 26 6 2.1029 -3.5598 -0.7857 27 6 1.8482 -2.1120 -1.2553 28 1 0.8034 -1.9749 -1.5335 29 8 2.7082 -1.7756 -2.3458 30 1 -0.3633 0.1024 1.0226 31 1 -0.3633 0.8344 -0.5999 32 1 -0.3633 -0.9367 -0.4227 33 1 3.0210 3.9077 -0.2613 34 1 0.6980 6.5003 0.5239 35 1 2.1137 6.2920 -0.5348 36 1 -0.6312 5.8882 -1.8194 37 1 2.0763 7.2290 -2.6615 38 1 0.6148 6.9576 -3.7533 39 1 -0.8025 8.3885 -2.2112 40 1 0.6595 8.6595 -1.1198 41 1 2.2391 -1.9683 2.0663 42 1 0.6328 -2.0811 1.2860 43 1 2.8197 -6.8728 -0.7579 44 1 1.3427 -4.2226 -1.1990 45 1 3.0935 -3.8841 -1.1045 46 1 2.5560 -2.3010 -3.1433 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047581390.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:04 Heat of formation + Delta-G solvation = 92.611534 kcal Electronic energy + Delta-G solvation = -28932.534797 eV Core-core repulsion = 24862.389752 eV Total energy + Delta-G solvation = -4070.145045 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.38768 -39.61480 -38.25964 -37.66606 -35.19644 -34.79689 -34.21226 -31.90226 -31.03038 -28.85961 -28.05926 -27.18339 -26.53519 -24.56982 -23.34889 -22.99912 -22.79241 -21.42577 -20.40317 -20.32507 -19.11679 -17.91694 -17.01668 -16.91900 -16.50896 -16.25530 -15.91808 -15.53172 -15.04569 -14.76908 -14.69246 -14.47449 -14.00765 -13.97980 -13.76503 -13.00553 -12.81937 -12.63725 -12.59697 -12.52190 -12.22556 -12.16026 -12.01915 -11.89350 -11.35047 -11.17175 -11.14150 -10.91638 -10.84668 -10.79467 -10.75415 -10.44203 -10.14581 -9.89411 -9.84082 -9.75561 -9.40043 -9.22138 -8.66475 -8.24161 -6.87935 -5.72604 -3.07557 0.96811 1.67827 1.74475 3.08998 3.15507 3.39594 3.42308 3.46198 3.47486 3.74080 4.08793 4.14450 4.30548 4.35929 4.48144 4.55011 4.63784 4.75209 4.77953 4.83436 5.04401 5.17560 5.29028 5.31681 5.43922 5.47543 5.49712 5.52294 5.54924 5.62848 5.74821 5.93377 5.93951 6.12444 6.12656 6.18924 6.27715 6.57264 6.68918 6.95684 7.39490 7.51119 7.60767 7.76777 7.81519 8.20075 8.25445 8.35210 9.17603 9.78064 10.41655 11.38825 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.032781 B = 0.002204 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.951680 B =12700.382931 C =12941.804779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.584 5.584 3 C 0.601 3.399 4 O -0.539 6.539 5 C -0.089 4.089 6 C 0.092 3.908 7 N -0.359 5.359 8 C 0.155 3.845 9 C -0.176 4.176 10 C -0.176 4.176 11 C -0.165 4.165 12 N -0.070 5.070 13 N -0.201 5.201 14 C 0.134 3.866 15 H 0.116 0.884 16 C 0.133 3.867 17 N -0.600 5.600 18 C -0.229 4.229 19 H 0.080 0.920 20 C -0.008 4.008 21 N -0.923 5.923 22 Si 0.916 3.084 23 H -0.285 1.285 24 H -0.290 1.290 25 H -0.284 1.284 26 C 0.154 3.846 27 C 0.064 3.936 28 H 0.057 0.943 29 O -0.561 6.561 30 H 0.058 0.942 31 H 0.094 0.906 32 H 0.070 0.930 33 H 0.204 0.796 34 H 0.103 0.897 35 H 0.106 0.894 36 H 0.121 0.879 37 H 0.099 0.901 38 H 0.099 0.901 39 H 0.101 0.899 40 H 0.099 0.901 41 H 0.049 0.951 42 H 0.028 0.972 43 H 0.254 0.746 44 H 0.048 0.952 45 H 0.061 0.939 46 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.048 27.292 -4.174 28.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.314 5.314 3 C 0.386 3.614 4 O -0.415 6.415 5 C -0.229 4.229 6 C -0.064 4.064 7 N -0.144 5.144 8 C 0.034 3.966 9 C -0.195 4.195 10 C -0.213 4.213 11 C -0.203 4.203 12 N -0.050 5.050 13 N -0.075 5.075 14 C 0.030 3.970 15 H 0.134 0.866 16 C 0.005 3.995 17 N -0.327 5.327 18 C -0.357 4.357 19 H 0.098 0.902 20 C -0.204 4.204 21 N -0.571 5.571 22 Si 0.746 3.254 23 H -0.211 1.211 24 H -0.216 1.216 25 H -0.211 1.211 26 C 0.028 3.972 27 C 0.004 3.996 28 H 0.075 0.925 29 O -0.366 6.366 30 H 0.076 0.924 31 H 0.112 0.888 32 H 0.089 0.911 33 H 0.221 0.779 34 H 0.121 0.879 35 H 0.124 0.876 36 H 0.139 0.861 37 H 0.117 0.883 38 H 0.117 0.883 39 H 0.120 0.880 40 H 0.118 0.882 41 H 0.067 0.933 42 H 0.046 0.954 43 H 0.064 0.936 44 H 0.066 0.934 45 H 0.079 0.921 46 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -5.647 27.595 -3.678 28.406 hybrid contribution 0.827 -1.174 0.044 1.436 sum -4.820 26.421 -3.634 27.102 Atomic orbital electron populations 1.22169 0.78704 1.03610 1.02694 1.47526 1.07523 1.05241 1.71127 1.16765 0.86025 0.81721 0.76839 1.90801 1.12739 1.86667 1.51308 1.21514 0.89894 0.95159 1.16283 1.23352 0.96285 0.88700 0.98103 1.50409 1.06029 1.08578 1.49375 1.21581 1.01977 0.73579 0.99504 1.22542 1.02733 0.97185 0.97046 1.23151 0.98917 1.03529 0.95699 1.22994 1.02573 0.91768 1.02933 1.81966 1.04167 0.96648 1.22175 1.74784 1.12751 1.09433 1.10491 1.22435 0.98439 0.81045 0.95043 0.86630 1.21767 0.97588 0.85376 0.94736 1.44298 1.83367 1.03226 1.01841 1.19028 1.41431 0.85825 0.89400 0.90192 1.24821 1.01736 0.97750 0.96078 1.69922 1.54832 1.23597 1.08701 0.86145 0.78052 0.82005 0.79224 1.21130 1.21588 1.21072 1.21892 1.01903 0.89067 0.84306 1.23591 0.92172 0.97278 0.86598 0.92549 1.86489 1.62043 1.63898 1.24148 0.92356 0.88792 0.91107 0.77940 0.87921 0.87622 0.86118 0.88269 0.88266 0.88036 0.88211 0.93290 0.95424 0.93608 0.93426 0.92085 0.78009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.05 8.20 59.85 0.49 1.54 16 2 N -0.58 -10.17 2.91 -172.71 -0.50 -10.67 16 3 C 0.60 10.42 7.67 -12.48 -0.10 10.33 16 4 O -0.54 -10.74 16.25 5.28 0.09 -10.65 16 5 C -0.09 -1.26 6.70 -83.55 -0.56 -1.82 16 6 C 0.09 0.96 11.28 -16.83 -0.19 0.77 16 7 N -0.36 -3.29 3.69 -61.06 -0.23 -3.51 16 8 C 0.15 0.77 6.82 -4.04 -0.03 0.74 16 9 C -0.18 -0.93 5.93 -90.62 -0.54 -1.47 16 10 C -0.18 -0.77 10.18 -26.73 -0.27 -1.04 16 11 C -0.17 -0.59 10.25 -26.73 -0.27 -0.87 16 12 N -0.07 -0.85 13.48 60.35 0.81 -0.04 16 13 N -0.20 -2.78 8.79 32.85 0.29 -2.49 16 14 C 0.13 2.71 3.17 -65.78 -0.21 2.50 16 15 H 0.12 2.64 7.02 -51.93 -0.36 2.27 16 16 C 0.13 2.87 6.79 -2.53 -0.02 2.85 16 17 N -0.60 -15.53 3.40 -169.83 -0.58 -16.11 16 18 C -0.23 -6.42 10.28 -15.06 -0.15 -6.57 16 19 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 20 C -0.01 -0.22 5.49 -17.43 -0.10 -0.31 16 21 N -0.92 -27.03 10.31 55.49 0.57 -26.46 16 22 Si 0.92 22.21 29.55 -169.99 -5.02 17.19 16 23 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 24 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 25 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 26 C 0.15 3.76 5.16 -2.90 -0.01 3.74 16 27 C 0.06 1.28 3.86 -24.90 -0.10 1.19 16 28 H 0.06 1.04 6.47 -51.93 -0.34 0.71 16 29 O -0.56 -10.80 13.39 -35.23 -0.47 -11.27 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.09 1.32 5.25 -51.93 -0.27 1.05 16 32 H 0.07 1.03 6.37 -51.93 -0.33 0.70 16 33 H 0.20 1.51 8.06 -52.49 -0.42 1.09 16 34 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.11 0.26 7.82 -51.93 -0.41 -0.15 16 36 H 0.12 0.88 7.94 -51.93 -0.41 0.46 16 37 H 0.10 0.34 8.03 -51.93 -0.42 -0.08 16 38 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.10 0.34 8.14 -51.92 -0.42 -0.08 16 40 H 0.10 0.23 8.14 -51.93 -0.42 -0.19 16 41 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.03 0.57 6.95 -51.93 -0.36 0.21 16 43 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 44 H 0.05 1.25 7.53 -51.93 -0.39 0.86 16 45 H 0.06 1.67 7.29 -51.93 -0.38 1.30 16 46 H 0.37 5.57 9.12 45.56 0.42 5.99 16 LS Contribution 377.70 15.07 5.69 5.69 Total: -1.00 -35.27 377.70 -7.16 -42.43 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -5.76 Total: 4.31 kcal Atomic # 6 Polarization: 13.64 SS G_CDS: -2.05 Total: 11.59 kcal Atomic # 7 Polarization: -59.66 SS G_CDS: 0.37 Total: -59.29 kcal Atomic # 8 Polarization: -21.53 SS G_CDS: -0.39 Total: -21.92 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.27 -7.16 -42.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047581390.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.046 kcal (2) G-P(sol) polarization free energy of solvation -35.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds