Wall clock time and date at job start Tue Mar 31 2020 18:25:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34776 * 120.00354 * 2 1 4 4 O 1.21280 * 120.00274 * 179.97438 * 3 2 1 5 5 C 1.50704 * 119.99395 * 359.72057 * 3 2 1 6 6 H 1.08994 * 109.45835 * 60.31065 * 5 3 2 7 7 C 1.53110 * 109.45120 * 180.28022 * 5 3 2 8 8 C 1.53421 * 109.57763 * 190.07598 * 7 5 3 9 9 C 1.50592 * 108.33816 * 310.17740 * 8 7 5 10 10 N 1.32912 * 129.16418 * 196.55757 * 9 8 7 11 11 N 1.29021 * 108.63647 * 179.88363 * 10 9 8 12 12 N 1.29108 * 110.25813 * 0.02562 * 11 10 9 13 13 H 0.96998 * 126.00804 * 180.08179 * 12 11 10 14 14 C 1.34401 * 107.98711 * 0.05325 * 12 11 10 15 15 C 1.50532 * 129.25641 * 179.85220 * 14 12 11 16 16 C 1.46503 * 120.00049 * 179.97438 * 2 1 3 17 17 H 1.08999 * 110.88633 * 180.70500 * 16 2 1 18 18 C 1.54917 * 111.00464 * 304.58348 * 16 2 1 19 19 N 1.47421 * 104.82997 * 155.08236 * 18 16 2 20 20 C 1.36938 * 125.64748 * 155.91236 * 19 18 16 21 21 H 1.07999 * 119.99802 * 353.93399 * 20 19 18 22 22 C 1.38813 * 120.00105 * 173.93809 * 20 19 18 23 23 N 1.31617 * 120.00224 * 6.84375 * 22 20 19 24 24 Si 1.86805 * 119.99786 * 186.84372 * 22 20 19 25 25 H 1.48500 * 109.47121 * 94.98467 * 24 22 20 26 26 H 1.48501 * 109.46895 * 214.98550 * 24 22 20 27 27 H 1.48496 * 109.47257 * 334.98218 * 24 22 20 28 28 C 1.47018 * 108.70689 * 335.87046 * 19 18 16 29 29 C 1.54372 * 107.28675 * 1.09242 * 28 19 18 30 30 H 1.08992 * 110.70944 * 263.79151 * 29 28 19 31 31 O 1.42902 * 110.75416 * 140.50534 * 29 28 19 32 32 H 1.09002 * 109.46582 * 90.00356 * 1 2 3 33 33 H 1.09000 * 109.47070 * 210.00108 * 1 2 3 34 34 H 1.08994 * 109.47145 * 330.00636 * 1 2 3 35 35 H 1.08994 * 109.45530 * 310.10578 * 7 5 3 36 36 H 1.08993 * 109.45763 * 70.06902 * 7 5 3 37 37 H 1.09007 * 109.69348 * 69.88844 * 8 7 5 38 38 H 1.09003 * 109.69095 * 190.42183 * 8 7 5 39 39 H 1.09001 * 109.69571 * 76.80065 * 15 14 12 40 40 H 1.08995 * 109.69278 * 316.21222 * 15 14 12 41 41 H 1.08994 * 110.36574 * 273.92406 * 18 16 2 42 42 H 1.08997 * 110.36421 * 36.13582 * 18 16 2 43 43 H 0.96995 * 120.00428 * 179.97438 * 23 22 20 44 44 H 1.09006 * 109.88224 * 120.47885 * 28 19 18 45 45 H 1.09004 * 109.88666 * 241.48970 * 28 19 18 46 46 H 0.96701 * 113.99998 * 66.48385 * 31 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3518 1.1671 0.0005 5 6 1.3854 2.4722 -0.0064 6 1 0.7593 2.5343 0.8836 7 6 2.3807 3.6357 -0.0121 8 6 1.6335 4.9527 0.2344 9 6 0.4614 5.0162 -0.7090 10 7 -0.2754 6.0643 -1.0630 11 7 -1.1775 5.6711 -1.8974 12 7 -1.0675 4.4024 -2.1098 13 1 -1.6276 3.8719 -2.6977 14 6 -0.0398 3.9459 -1.3737 15 6 0.5018 2.5461 -1.2586 16 6 2.1976 -1.2687 0.0006 17 1 3.2737 -1.0961 0.0130 18 6 1.7643 -2.1596 1.1916 19 7 2.0617 -3.5374 0.7601 20 6 2.2912 -4.6019 1.5905 21 1 2.3593 -4.4494 2.6575 22 6 2.4365 -5.8767 1.0608 23 7 2.4886 -6.0455 -0.2435 24 14 2.5581 -7.3528 2.1992 25 1 1.2135 -7.9602 2.3675 26 1 3.4842 -8.3549 1.6131 27 1 3.0734 -6.9167 3.5218 28 6 2.0700 -3.5798 -0.7095 29 6 1.7891 -2.1473 -1.2113 30 1 0.7313 -2.0198 -1.4409 31 8 2.5955 -1.8427 -2.3511 32 1 -0.3632 -0.0001 -1.0277 33 1 -0.3633 -0.8900 0.5138 34 1 -0.3633 0.8900 0.5137 35 1 3.1198 3.4850 0.7747 36 1 2.8829 3.6791 -0.9784 37 1 1.2781 4.9862 1.2644 38 1 2.3011 5.7941 0.0489 39 1 1.0952 2.3081 -2.1414 40 1 -0.3230 1.8394 -1.1683 41 1 2.3401 -1.9083 2.0823 42 1 0.6980 -2.0425 1.3846 43 1 2.5905 -6.9362 -0.6136 44 1 3.0454 -3.9120 -1.0652 45 1 1.2950 -4.2587 -1.0652 46 1 2.3802 -2.3649 -3.1360 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047597669.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:14 Heat of formation + Delta-G solvation = 45.477167 kcal Electronic energy + Delta-G solvation = -29837.382997 eV Core-core repulsion = 25765.194052 eV Total energy + Delta-G solvation = -4072.188945 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.76108 -40.42268 -38.23471 -36.67627 -35.38546 -34.91593 -34.14749 -32.06971 -30.68818 -30.58328 -28.56012 -27.43491 -26.91025 -25.10272 -24.33321 -23.42956 -23.03631 -20.97560 -20.49599 -19.79819 -19.04455 -18.30140 -17.51228 -17.15585 -16.75058 -16.34188 -15.98126 -15.68124 -14.90468 -14.63608 -14.34441 -14.21392 -14.15675 -13.92188 -13.87725 -13.26881 -13.06476 -12.80285 -12.48878 -12.42403 -12.26408 -12.10775 -12.03614 -11.84986 -11.56502 -11.44741 -11.32039 -11.29389 -10.91407 -10.87720 -10.84843 -10.61616 -10.20183 -10.01547 -9.88470 -9.74653 -9.34924 -9.19937 -8.76892 -8.46383 -6.98558 -5.84419 -3.19003 1.20822 2.21063 2.29555 2.67240 2.95888 3.33725 3.39521 3.41474 3.84490 4.12708 4.36142 4.37722 4.40644 4.54491 4.61464 4.71462 4.83410 4.96725 5.02999 5.10998 5.12362 5.20317 5.32594 5.34719 5.38546 5.44877 5.52438 5.56831 5.64341 5.69825 5.75316 5.79782 5.91052 5.96922 6.05714 6.06475 6.39382 6.48605 6.50360 6.78077 7.28070 7.38604 7.46752 7.66996 8.09262 8.10543 8.13197 8.21797 9.06909 9.67327 10.30218 11.27293 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.027219 B = 0.002524 C = 0.002479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.443625 B =11092.938570 C =11293.709835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.599 5.599 3 C 0.520 3.480 4 O -0.529 6.529 5 C -0.099 4.099 6 H 0.105 0.895 7 C -0.101 4.101 8 C -0.034 4.034 9 C -0.015 4.015 10 N -0.258 5.258 11 N -0.091 5.091 12 N -0.382 5.382 13 H 0.448 0.552 14 C -0.009 4.009 15 C -0.048 4.048 16 C 0.133 3.867 17 H 0.116 0.884 18 C 0.131 3.869 19 N -0.599 5.599 20 C -0.233 4.233 21 H 0.081 0.919 22 C -0.005 4.005 23 N -0.920 5.920 24 Si 0.914 3.086 25 H -0.288 1.288 26 H -0.290 1.290 27 H -0.280 1.280 28 C 0.151 3.849 29 C 0.067 3.933 30 H 0.055 0.945 31 O -0.561 6.561 32 H 0.056 0.944 33 H 0.083 0.917 34 H 0.072 0.928 35 H 0.090 0.910 36 H 0.075 0.925 37 H 0.086 0.914 38 H 0.090 0.910 39 H 0.095 0.905 40 H 0.097 0.903 41 H 0.048 0.952 42 H 0.026 0.974 43 H 0.254 0.746 44 H 0.056 0.944 45 H 0.051 0.949 46 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.068 17.425 -3.540 19.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.331 5.331 3 C 0.307 3.693 4 O -0.404 6.404 5 C -0.121 4.121 6 H 0.123 0.877 7 C -0.139 4.139 8 C -0.073 4.073 9 C -0.155 4.155 10 N -0.124 5.124 11 N -0.070 5.070 12 N -0.101 5.101 13 H 0.294 0.706 14 C -0.144 4.144 15 C -0.087 4.087 16 C 0.029 3.971 17 H 0.134 0.866 18 C 0.004 3.996 19 N -0.326 5.326 20 C -0.360 4.360 21 H 0.099 0.901 22 C -0.201 4.201 23 N -0.567 5.567 24 Si 0.744 3.256 25 H -0.215 1.215 26 H -0.217 1.217 27 H -0.205 1.205 28 C 0.026 3.974 29 C 0.006 3.994 30 H 0.072 0.928 31 O -0.365 6.365 32 H 0.074 0.926 33 H 0.102 0.898 34 H 0.090 0.910 35 H 0.109 0.891 36 H 0.094 0.906 37 H 0.104 0.896 38 H 0.108 0.892 39 H 0.113 0.887 40 H 0.115 0.885 41 H 0.067 0.933 42 H 0.044 0.956 43 H 0.064 0.936 44 H 0.075 0.925 45 H 0.069 0.931 46 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -7.834 19.015 -3.408 20.846 hybrid contribution -0.345 -2.673 -0.171 2.701 sum -8.179 16.342 -3.579 18.622 Atomic orbital electron populations 1.22024 0.80298 1.03775 1.01610 1.47735 1.06593 1.05995 1.72798 1.20322 0.87947 0.84731 0.76304 1.90722 1.13726 1.86981 1.49015 1.21323 0.97798 0.93832 0.99132 0.87737 1.21491 0.96967 0.90849 1.04625 1.20031 0.91832 0.98764 0.96688 1.21802 1.01465 0.88816 1.03414 1.74832 1.02876 1.25998 1.08715 1.78579 1.19922 0.92427 1.16065 1.44695 1.23967 1.08727 1.32734 0.70604 1.21824 0.93827 0.99188 0.99585 1.20406 0.99652 0.89270 0.99375 1.22414 0.98542 0.81175 0.94978 0.86637 1.21781 0.97630 0.85645 0.94564 1.44230 1.83383 1.03353 1.01656 1.19074 1.42869 0.84699 0.89399 0.90105 1.24842 1.01671 0.97527 0.96102 1.69942 1.55928 1.21360 1.09490 0.86068 0.77437 0.82463 0.79626 1.21529 1.21663 1.20493 1.21857 1.01832 0.89474 0.84253 1.23529 0.92672 0.97418 0.85777 0.92752 1.86500 1.62461 1.65475 1.22103 0.92551 0.89827 0.90957 0.89111 0.90605 0.89597 0.89192 0.88694 0.88474 0.93344 0.95612 0.93588 0.92538 0.93117 0.78005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.60 7.61 59.85 0.46 1.06 16 2 N -0.60 -7.96 2.91 -171.47 -0.50 -8.46 16 3 C 0.52 6.94 7.06 -10.98 -0.08 6.86 16 4 O -0.53 -9.33 15.19 5.56 0.08 -9.24 16 5 C -0.10 -0.88 1.69 -91.49 -0.15 -1.04 16 6 H 0.10 0.77 7.38 -51.93 -0.38 0.39 16 7 C -0.10 -0.91 4.64 -26.46 -0.12 -1.03 16 8 C -0.03 -0.28 6.30 -27.72 -0.17 -0.45 16 9 C -0.02 -0.15 7.11 -83.12 -0.59 -0.74 16 10 N -0.26 -3.18 12.40 33.16 0.41 -2.77 16 11 N -0.09 -1.01 13.40 60.35 0.81 -0.20 16 12 N -0.38 -2.92 6.97 33.39 0.23 -2.69 16 13 H 0.45 1.65 8.96 -190.07 -1.70 -0.05 16 14 C -0.01 -0.07 7.15 -82.50 -0.59 -0.66 16 15 C -0.05 -0.34 5.08 -27.74 -0.14 -0.49 16 16 C 0.13 2.35 3.18 -65.78 -0.21 2.14 16 17 H 0.12 2.43 7.01 -51.93 -0.36 2.06 16 18 C 0.13 2.55 6.80 -2.53 -0.02 2.53 16 19 N -0.60 -14.56 3.39 -170.04 -0.58 -15.14 16 20 C -0.23 -6.24 10.26 -15.06 -0.15 -6.39 16 21 H 0.08 2.10 7.84 -52.49 -0.41 1.68 16 22 C 0.00 -0.13 5.48 -17.43 -0.10 -0.23 16 23 N -0.92 -26.01 10.36 55.49 0.57 -25.43 16 24 Si 0.91 21.41 29.56 -169.99 -5.02 16.39 16 25 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 26 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 27 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 28 C 0.15 3.46 5.16 -3.04 -0.02 3.45 16 29 C 0.07 1.18 3.91 -24.87 -0.10 1.08 16 30 H 0.05 0.85 7.17 -51.93 -0.37 0.48 16 31 O -0.56 -9.67 13.39 -35.23 -0.47 -10.14 16 32 H 0.06 0.43 7.11 -51.93 -0.37 0.06 16 33 H 0.08 0.85 6.11 -51.93 -0.32 0.53 16 34 H 0.07 0.47 5.90 -51.93 -0.31 0.16 16 35 H 0.09 0.87 7.76 -51.93 -0.40 0.46 16 36 H 0.08 0.75 8.12 -51.93 -0.42 0.33 16 37 H 0.09 0.60 8.14 -51.92 -0.42 0.18 16 38 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.09 0.75 8.12 -51.93 -0.42 0.33 16 40 H 0.10 0.52 4.91 -51.93 -0.26 0.26 16 41 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.03 0.47 6.09 -51.93 -0.32 0.15 16 43 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 44 H 0.06 1.48 7.46 -51.93 -0.39 1.10 16 45 H 0.05 1.26 7.36 -51.93 -0.38 0.87 16 46 H 0.37 4.89 9.12 45.56 0.42 5.31 16 LS Contribution 359.46 15.07 5.42 5.42 Total: -1.00 -35.44 359.46 -7.83 -43.27 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -6.80 Total: 2.92 kcal Atomic # 6 Polarization: 8.07 SS G_CDS: -1.99 Total: 6.09 kcal Atomic # 7 Polarization: -55.65 SS G_CDS: 0.95 Total: -54.70 kcal Atomic # 8 Polarization: -19.00 SS G_CDS: -0.39 Total: -19.39 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -35.44 -7.83 -43.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047597669.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.749 kcal (2) G-P(sol) polarization free energy of solvation -35.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds