Wall clock time and date at job start Tue Mar 31 2020 18:25:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34776 * 120.00354 * 2 1 4 4 O 1.21280 * 120.00274 * 179.97438 * 3 2 1 5 5 C 1.50704 * 119.99395 * 359.72057 * 3 2 1 6 6 H 1.08994 * 109.45835 * 60.31065 * 5 3 2 7 7 C 1.53110 * 109.45120 * 180.28022 * 5 3 2 8 8 C 1.53421 * 109.57763 * 190.07598 * 7 5 3 9 9 C 1.50592 * 108.33816 * 310.17740 * 8 7 5 10 10 N 1.32912 * 129.16418 * 196.55757 * 9 8 7 11 11 N 1.29021 * 108.63647 * 179.88363 * 10 9 8 12 12 N 1.29108 * 110.25813 * 0.02562 * 11 10 9 13 13 H 0.96998 * 126.00804 * 180.08179 * 12 11 10 14 14 C 1.34401 * 107.98711 * 0.05325 * 12 11 10 15 15 C 1.50532 * 129.25641 * 179.85220 * 14 12 11 16 16 C 1.46503 * 120.00049 * 179.97438 * 2 1 3 17 17 H 1.08999 * 110.88633 * 180.70500 * 16 2 1 18 18 C 1.54917 * 111.00464 * 304.58348 * 16 2 1 19 19 N 1.47421 * 104.82997 * 155.08236 * 18 16 2 20 20 C 1.36938 * 125.64748 * 155.91236 * 19 18 16 21 21 H 1.07999 * 119.99802 * 353.93399 * 20 19 18 22 22 C 1.38813 * 120.00105 * 173.93809 * 20 19 18 23 23 N 1.31617 * 120.00224 * 6.84375 * 22 20 19 24 24 Si 1.86805 * 119.99786 * 186.84372 * 22 20 19 25 25 H 1.48500 * 109.47121 * 94.98467 * 24 22 20 26 26 H 1.48501 * 109.46895 * 214.98550 * 24 22 20 27 27 H 1.48496 * 109.47257 * 334.98218 * 24 22 20 28 28 C 1.47018 * 108.70689 * 335.87046 * 19 18 16 29 29 C 1.54372 * 107.28675 * 1.09242 * 28 19 18 30 30 H 1.08992 * 110.70944 * 263.79151 * 29 28 19 31 31 O 1.42902 * 110.75416 * 140.50534 * 29 28 19 32 32 H 1.09002 * 109.46582 * 90.00356 * 1 2 3 33 33 H 1.09000 * 109.47070 * 210.00108 * 1 2 3 34 34 H 1.08994 * 109.47145 * 330.00636 * 1 2 3 35 35 H 1.08994 * 109.45530 * 310.10578 * 7 5 3 36 36 H 1.08993 * 109.45763 * 70.06902 * 7 5 3 37 37 H 1.09007 * 109.69348 * 69.88844 * 8 7 5 38 38 H 1.09003 * 109.69095 * 190.42183 * 8 7 5 39 39 H 1.09001 * 109.69571 * 76.80065 * 15 14 12 40 40 H 1.08995 * 109.69278 * 316.21222 * 15 14 12 41 41 H 1.08994 * 110.36574 * 273.92406 * 18 16 2 42 42 H 1.08997 * 110.36421 * 36.13582 * 18 16 2 43 43 H 0.96995 * 120.00428 * 179.97438 * 23 22 20 44 44 H 1.09006 * 109.88224 * 120.47885 * 28 19 18 45 45 H 1.09004 * 109.88666 * 241.48970 * 28 19 18 46 46 H 0.96701 * 113.99998 * 66.48385 * 31 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3518 1.1671 0.0005 5 6 1.3854 2.4722 -0.0064 6 1 0.7593 2.5343 0.8836 7 6 2.3807 3.6357 -0.0121 8 6 1.6335 4.9527 0.2344 9 6 0.4614 5.0162 -0.7090 10 7 -0.2754 6.0643 -1.0630 11 7 -1.1775 5.6711 -1.8974 12 7 -1.0675 4.4024 -2.1098 13 1 -1.6276 3.8719 -2.6977 14 6 -0.0398 3.9459 -1.3737 15 6 0.5018 2.5461 -1.2586 16 6 2.1976 -1.2687 0.0006 17 1 3.2737 -1.0961 0.0130 18 6 1.7643 -2.1596 1.1916 19 7 2.0617 -3.5374 0.7601 20 6 2.2912 -4.6019 1.5905 21 1 2.3593 -4.4494 2.6575 22 6 2.4365 -5.8767 1.0608 23 7 2.4886 -6.0455 -0.2435 24 14 2.5581 -7.3528 2.1992 25 1 1.2135 -7.9602 2.3675 26 1 3.4842 -8.3549 1.6131 27 1 3.0734 -6.9167 3.5218 28 6 2.0700 -3.5798 -0.7095 29 6 1.7891 -2.1473 -1.2113 30 1 0.7313 -2.0198 -1.4409 31 8 2.5955 -1.8427 -2.3511 32 1 -0.3632 -0.0001 -1.0277 33 1 -0.3633 -0.8900 0.5138 34 1 -0.3633 0.8900 0.5137 35 1 3.1198 3.4850 0.7747 36 1 2.8829 3.6791 -0.9784 37 1 1.2781 4.9862 1.2644 38 1 2.3011 5.7941 0.0489 39 1 1.0952 2.3081 -2.1414 40 1 -0.3230 1.8394 -1.1683 41 1 2.3401 -1.9083 2.0823 42 1 0.6980 -2.0425 1.3846 43 1 2.5905 -6.9362 -0.6136 44 1 3.0454 -3.9120 -1.0652 45 1 1.2950 -4.2587 -1.0652 46 1 2.3802 -2.3649 -3.1360 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047597669.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:13 Heat of formation + Delta-G solvation = 16.648362 kcal Electronic energy + Delta-G solvation = -29838.633108 eV Core-core repulsion = 25765.194052 eV Total energy + Delta-G solvation = -4073.439056 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.46047 -41.49978 -39.62833 -37.55139 -36.71198 -36.36999 -34.89272 -33.83748 -31.64343 -31.27711 -30.13620 -28.90581 -27.91358 -26.49578 -25.46713 -24.24831 -23.78797 -22.31711 -22.02299 -20.77123 -20.01684 -19.03294 -18.99578 -18.63580 -17.82219 -17.46615 -17.08997 -16.63564 -16.53514 -15.79306 -15.58217 -15.40972 -14.90412 -14.84471 -14.71034 -14.59947 -14.45054 -14.12006 -13.93347 -13.58374 -13.17470 -13.15444 -13.07748 -12.93598 -12.88849 -12.73434 -12.65624 -12.54322 -12.19676 -12.06430 -12.03109 -11.87598 -11.60581 -11.46416 -11.28857 -11.01924 -10.75126 -10.68968 -9.88690 -9.65331 -8.93201 -7.89245 -5.25705 0.54310 1.46528 1.47101 1.48024 1.53024 1.57151 1.84244 1.93111 2.48205 3.13050 3.18703 3.32723 3.42159 3.61198 3.66556 3.74391 3.87675 3.91074 3.97079 4.08817 4.14430 4.20573 4.30958 4.38946 4.47519 4.48901 4.53063 4.59081 4.66777 4.74237 4.83935 4.86487 4.98647 5.03016 5.09424 5.15077 5.23961 5.36536 5.41124 5.43140 5.54456 5.67031 6.00137 6.13855 6.43872 6.86876 7.04454 7.18447 7.41280 7.70180 8.32662 9.20732 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.027219 B = 0.002524 C = 0.002479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.443625 B =11092.938570 C =11293.709835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 N -0.595 5.595 3 C 0.518 3.482 4 O -0.580 6.580 5 C -0.088 4.088 6 H 0.132 0.868 7 C -0.097 4.097 8 C -0.027 4.027 9 C -0.031 4.031 10 N -0.293 5.293 11 N -0.115 5.115 12 N -0.362 5.362 13 H 0.466 0.534 14 C 0.005 3.995 15 C -0.040 4.040 16 C 0.146 3.854 17 H 0.075 0.925 18 C 0.132 3.868 19 N -0.622 5.622 20 C -0.245 4.245 21 H 0.084 0.916 22 C -0.061 4.061 23 N -0.948 5.948 24 Si 0.978 3.022 25 H -0.283 1.283 26 H -0.297 1.297 27 H -0.269 1.269 28 C 0.161 3.839 29 C 0.087 3.913 30 H 0.091 0.909 31 O -0.571 6.571 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.108 0.892 35 H 0.081 0.919 36 H 0.062 0.938 37 H 0.101 0.899 38 H 0.091 0.909 39 H 0.093 0.907 40 H 0.127 0.873 41 H 0.040 0.960 42 H 0.056 0.944 43 H 0.248 0.752 44 H 0.010 0.990 45 H 0.027 0.973 46 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.410 18.367 -3.201 21.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 N -0.327 5.327 3 C 0.307 3.693 4 O -0.459 6.459 5 C -0.109 4.109 6 H 0.150 0.850 7 C -0.135 4.135 8 C -0.066 4.066 9 C -0.171 4.171 10 N -0.158 5.158 11 N -0.094 5.094 12 N -0.084 5.084 13 H 0.315 0.685 14 C -0.132 4.132 15 C -0.079 4.079 16 C 0.040 3.960 17 H 0.094 0.906 18 C 0.006 3.994 19 N -0.349 5.349 20 C -0.374 4.374 21 H 0.102 0.898 22 C -0.255 4.255 23 N -0.596 5.596 24 Si 0.807 3.193 25 H -0.209 1.209 26 H -0.224 1.224 27 H -0.194 1.194 28 C 0.035 3.965 29 C 0.027 3.973 30 H 0.108 0.892 31 O -0.378 6.378 32 H 0.101 0.899 33 H 0.096 0.904 34 H 0.126 0.874 35 H 0.100 0.900 36 H 0.081 0.919 37 H 0.119 0.881 38 H 0.110 0.890 39 H 0.111 0.889 40 H 0.145 0.855 41 H 0.058 0.942 42 H 0.074 0.926 43 H 0.058 0.942 44 H 0.028 0.972 45 H 0.045 0.955 46 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -10.244 19.997 -3.086 22.679 hybrid contribution 0.425 -2.950 -0.289 2.994 sum -9.818 17.047 -3.374 19.960 Atomic orbital electron populations 1.22431 0.77139 1.05346 1.03883 1.47740 1.08309 1.04177 1.72443 1.21081 0.87548 0.85817 0.74821 1.90711 1.16273 1.87692 1.51192 1.21298 0.97709 0.90652 1.01275 0.85017 1.21415 0.96968 0.91520 1.03625 1.20008 0.91281 0.98118 0.97191 1.22143 1.01880 0.88959 1.04145 1.74799 1.03890 1.27363 1.09784 1.78517 1.20380 0.93827 1.16679 1.44690 1.23602 1.07978 1.32142 0.68508 1.21865 0.93392 0.99143 0.98829 1.20412 1.00112 0.89118 0.98249 1.21843 0.96988 0.83087 0.94072 0.90641 1.21924 0.98983 0.83581 0.94948 1.44505 1.83403 1.04814 1.02205 1.19445 1.42046 0.85798 0.90070 0.89772 1.25659 1.02165 1.00151 0.97516 1.70150 1.57191 1.21310 1.10998 0.85063 0.77250 0.78911 0.78121 1.20947 1.22383 1.19382 1.21628 0.98462 0.92528 0.83886 1.23286 0.94417 0.93710 0.85908 0.89184 1.86472 1.62948 1.65711 1.22710 0.89871 0.90403 0.87353 0.90001 0.91936 0.88118 0.89038 0.88902 0.85471 0.94204 0.92617 0.94236 0.97180 0.95517 0.75892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.70 7.61 127.77 0.97 1.68 16 2 N -0.60 -14.19 2.91 -814.81 -2.37 -16.56 16 3 C 0.52 12.78 7.06 87.66 0.62 13.40 16 4 O -0.58 -20.46 15.19 -3.03 -0.05 -20.50 16 5 C -0.09 -1.28 1.69 -11.36 -0.02 -1.30 16 6 H 0.13 1.29 7.38 -2.39 -0.02 1.27 16 7 C -0.10 -1.58 4.64 30.77 0.14 -1.44 16 8 C -0.03 -0.38 6.30 29.96 0.19 -0.20 16 9 C -0.03 -0.55 7.11 41.75 0.30 -0.25 16 10 N -0.29 -6.79 12.40 -48.99 -0.61 -7.40 16 11 N -0.12 -2.35 13.40 37.02 0.50 -1.86 16 12 N -0.36 -4.43 6.97 -48.27 -0.34 -4.77 16 13 H 0.47 1.77 8.96 -219.68 -1.97 -0.20 16 14 C 0.00 0.06 7.15 41.50 0.30 0.36 16 15 C -0.04 -0.41 5.08 29.94 0.15 -0.25 16 16 C 0.15 5.04 3.18 46.38 0.15 5.18 16 17 H 0.08 3.26 7.01 -2.39 -0.02 3.24 16 18 C 0.13 5.02 6.80 86.86 0.59 5.61 16 19 N -0.62 -30.61 3.39 -691.90 -2.35 -32.96 16 20 C -0.24 -13.31 10.26 84.03 0.86 -12.44 16 21 H 0.08 4.38 7.84 -2.91 -0.02 4.35 16 22 C -0.06 -3.40 5.48 84.86 0.47 -2.93 16 23 N -0.95 -55.22 10.36 21.65 0.22 -54.99 16 24 Si 0.98 44.48 29.56 68.60 2.03 46.50 16 25 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 26 H -0.30 -13.71 7.11 99.48 0.71 -13.01 16 27 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 28 C 0.16 7.53 5.16 86.75 0.45 7.98 16 29 C 0.09 3.00 3.91 31.80 0.12 3.13 16 30 H 0.09 2.50 7.17 -2.39 -0.02 2.48 16 31 O -0.57 -19.19 13.39 -148.98 -1.99 -21.19 16 32 H 0.08 0.73 7.11 -2.39 -0.02 0.71 16 33 H 0.08 1.20 6.11 -2.39 -0.01 1.19 16 34 H 0.11 0.71 5.90 -2.39 -0.01 0.69 16 35 H 0.08 1.50 7.76 -2.39 -0.02 1.48 16 36 H 0.06 1.18 8.12 -2.39 -0.02 1.16 16 37 H 0.10 1.14 8.14 -2.38 -0.02 1.12 16 38 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.09 1.11 8.12 -2.39 -0.02 1.09 16 40 H 0.13 0.57 4.91 -2.39 -0.01 0.56 16 41 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.06 1.84 6.09 -2.39 -0.01 1.82 16 43 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 44 H 0.01 0.55 7.46 -2.38 -0.02 0.53 16 45 H 0.03 1.36 7.36 -2.39 -0.02 1.34 16 46 H 0.39 9.81 9.12 -74.06 -0.68 9.13 16 Total: -1.00 -81.59 359.46 -1.26 -82.85 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: -1.59 Total: 12.35 kcal Atomic # 6 Polarization: 13.23 SS G_CDS: 5.29 Total: 18.52 kcal Atomic # 7 Polarization: -113.60 SS G_CDS: -4.94 Total: -118.54 kcal Atomic # 8 Polarization: -39.65 SS G_CDS: -2.04 Total: -41.69 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.50 kcal Total: -81.59 -1.26 -82.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047597669.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.503 kcal (2) G-P(sol) polarization free energy of solvation -81.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds