Wall clock time and date at job start Tue Mar 31 2020 18:25:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34779 * 120.00041 * 2 1 4 4 O 1.21273 * 120.00178 * 5.14707 * 3 2 1 5 5 C 1.50702 * 119.99739 * 185.15003 * 3 2 1 6 6 H 1.08997 * 109.45478 * 50.10620 * 5 3 2 7 7 C 1.53139 * 109.44864 * 170.06254 * 5 3 2 8 8 C 1.53466 * 109.30487 * 189.46043 * 7 5 3 9 9 C 1.50810 * 108.13198 * 311.28336 * 8 7 5 10 10 N 1.29831 * 128.52485 * 195.90132 * 9 8 7 11 11 N 1.28903 * 109.48181 * 179.90755 * 10 9 8 12 12 C 1.30844 * 109.74022 * 0.02562 * 11 10 9 13 13 N 1.34698 * 107.06735 * 0.03641 * 12 11 10 14 14 C 1.46250 * 128.85367 * 179.90184 * 13 12 11 15 15 C 1.46496 * 119.99821 * 180.02562 * 2 1 3 16 16 H 1.09007 * 110.91652 * 184.84209 * 15 2 1 17 17 C 1.55129 * 110.90753 * 308.91681 * 15 2 1 18 18 N 1.47425 * 104.72498 * 155.27592 * 17 15 2 19 19 C 1.36927 * 125.64863 * 155.81476 * 18 17 15 20 20 H 1.08001 * 120.00345 * 356.06175 * 19 18 17 21 21 C 1.38817 * 119.99851 * 176.06285 * 19 18 17 22 22 N 1.31621 * 119.99824 * 211.92838 * 21 19 18 23 23 Si 1.86800 * 119.99958 * 31.93184 * 21 19 18 24 24 H 1.48500 * 109.47024 * 275.64994 * 23 21 19 25 25 H 1.48493 * 109.47342 * 35.65221 * 23 21 19 26 26 H 1.48506 * 109.47183 * 155.65196 * 23 21 19 27 27 C 1.47030 * 108.70117 * 335.55563 * 18 17 15 28 28 C 1.54324 * 107.27247 * 1.28327 * 27 18 17 29 29 H 1.08998 * 110.72114 * 263.66236 * 28 27 18 30 30 O 1.42891 * 110.72033 * 140.55677 * 28 27 18 31 31 H 1.08998 * 109.47148 * 275.31055 * 1 2 3 32 32 H 1.09004 * 109.47371 * 35.30626 * 1 2 3 33 33 H 1.08993 * 109.47529 * 155.31118 * 1 2 3 34 34 H 1.09006 * 109.49825 * 309.39938 * 7 5 3 35 35 H 1.09000 * 109.50407 * 69.47361 * 7 5 3 36 36 H 1.08993 * 109.73436 * 70.94162 * 8 7 5 37 37 H 1.08995 * 109.73119 * 191.58166 * 8 7 5 38 38 H 1.07990 * 126.46385 * 180.02562 * 12 11 10 39 39 H 1.08992 * 109.61159 * 77.34203 * 14 13 12 40 40 H 1.09001 * 109.57035 * 316.88900 * 14 13 12 41 41 H 1.09000 * 110.49589 * 36.43170 * 17 15 2 42 42 H 1.09001 * 110.33783 * 274.03479 * 17 15 2 43 43 H 0.96994 * 120.00112 * 354.98042 * 22 21 19 44 44 H 1.08998 * 109.88274 * 120.70555 * 27 18 17 45 45 H 1.09001 * 109.87835 * 241.87012 * 27 18 17 46 46 H 0.96705 * 113.99710 * 61.46049 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5362 2.2154 0.0942 5 6 3.6413 1.1698 -0.1172 6 1 3.9408 0.5473 -0.9603 7 6 4.1329 2.6027 -0.3412 8 6 5.6260 2.5775 -0.6947 9 6 6.3321 1.7048 0.3123 10 7 7.6033 1.6268 0.5645 11 7 7.8040 0.7616 1.4987 12 6 6.6617 0.2506 1.8806 13 7 5.7002 0.8333 1.1388 14 6 4.2549 0.6123 1.1726 15 6 2.1974 -1.2687 -0.0006 16 1 3.2707 -1.0985 0.0855 17 6 1.6858 -2.2038 1.1265 18 7 2.0167 -3.5640 0.6641 19 6 2.1949 -4.6586 1.4671 20 1 2.1572 -4.5523 2.5412 21 6 2.4242 -5.9050 0.9006 22 7 1.9923 -6.9919 1.5046 23 14 3.3455 -6.0398 -0.7187 24 1 2.3978 -5.8448 -1.8452 25 1 4.4024 -4.9982 -0.7751 26 1 3.9689 -7.3837 -0.8233 27 6 2.1175 -3.5517 -0.8027 28 6 1.8662 -2.1016 -1.2672 29 1 0.8252 -1.9654 -1.5601 30 8 2.7415 -1.7562 -2.3425 31 1 -0.3633 0.0951 1.0232 32 1 -0.3634 0.8387 -0.5939 33 1 -0.3634 -0.9336 -0.4292 34 1 3.5729 3.0557 -1.1594 35 1 3.9836 3.1850 0.5681 36 1 5.7603 2.1671 -1.6955 37 1 6.0309 3.5886 -0.6543 38 1 6.5171 -0.4974 2.6460 39 1 3.8262 1.1258 2.0331 40 1 4.0505 -0.4561 1.2425 41 1 0.6082 -2.0971 1.2512 42 1 2.2003 -1.9857 2.0624 43 1 1.5787 -6.9286 2.3796 44 1 3.1137 -3.8715 -1.1085 45 1 1.3654 -4.2139 -1.2315 46 1 2.6274 -2.3013 -3.1331 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047638724.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:17 Heat of formation + Delta-G solvation = 47.105995 kcal Electronic energy + Delta-G solvation = -30884.961580 eV Core-core repulsion = 26812.843267 eV Total energy + Delta-G solvation = -4072.118314 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.42165 -40.74432 -38.70612 -37.05509 -35.74417 -35.12268 -33.80881 -32.26199 -31.58605 -29.52866 -29.07415 -28.09126 -27.29867 -25.18044 -24.14093 -23.31027 -22.40284 -21.57454 -20.82798 -20.18109 -19.07533 -18.05895 -17.84735 -17.33132 -17.03614 -16.40973 -16.23371 -15.83905 -15.11125 -15.00955 -14.94724 -14.59784 -14.52395 -14.27693 -13.83723 -13.68592 -13.46500 -13.19053 -12.87631 -12.74932 -12.45219 -12.29070 -12.22331 -12.07230 -11.83972 -11.71593 -11.51937 -11.40332 -11.27842 -10.98382 -10.51786 -10.45989 -10.27762 -10.24846 -10.02983 -9.80296 -9.42165 -9.27022 -8.84257 -8.58201 -7.37167 -6.59709 -3.37999 1.71421 2.10477 2.39232 2.68590 2.80191 3.21087 3.34396 3.50658 3.84008 3.93136 4.01904 4.09589 4.17595 4.39245 4.51466 4.56138 4.63518 4.66053 4.70223 4.83611 4.93011 5.00206 5.03759 5.15282 5.19233 5.26306 5.29191 5.33290 5.41886 5.45412 5.49146 5.62207 5.68973 5.76002 5.77240 5.98680 6.04130 6.13058 6.18451 6.25234 6.31460 6.69281 7.09713 7.38764 7.55575 7.84872 8.10499 8.63175 8.79309 9.34801 9.97455 10.91034 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011497 B = 0.004513 C = 0.003729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2434.834145 B = 6203.462331 C = 7507.581992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.597 5.597 3 C 0.530 3.470 4 O -0.533 6.533 5 C -0.126 4.126 6 H 0.118 0.882 7 C -0.104 4.104 8 C -0.033 4.033 9 C 0.176 3.824 10 N -0.293 5.293 11 N -0.302 5.302 12 C 0.161 3.839 13 N -0.470 5.470 14 C 0.106 3.894 15 C 0.112 3.888 16 H 0.113 0.887 17 C 0.135 3.865 18 N -0.600 5.600 19 C -0.349 4.349 20 H 0.082 0.918 21 C -0.011 4.011 22 N -0.902 5.902 23 Si 1.060 2.940 24 H -0.293 1.293 25 H -0.291 1.291 26 H -0.296 1.296 27 C 0.077 3.923 28 C 0.082 3.918 29 H 0.073 0.927 30 O -0.562 6.562 31 H 0.060 0.940 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.094 0.906 35 H 0.079 0.921 36 H 0.098 0.902 37 H 0.105 0.895 38 H 0.221 0.779 39 H 0.098 0.902 40 H 0.112 0.888 41 H 0.039 0.961 42 H 0.053 0.947 43 H 0.267 0.733 44 H 0.049 0.951 45 H 0.049 0.951 46 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.612 16.226 -5.291 17.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.329 5.329 3 C 0.316 3.684 4 O -0.409 6.409 5 C -0.148 4.148 6 H 0.136 0.864 7 C -0.142 4.142 8 C -0.073 4.073 9 C -0.092 4.092 10 N -0.133 5.133 11 N -0.141 5.141 12 C -0.127 4.127 13 N -0.161 5.161 14 C -0.017 4.017 15 C 0.007 3.993 16 H 0.130 0.870 17 C 0.008 3.992 18 N -0.329 5.329 19 C -0.475 4.475 20 H 0.100 0.900 21 C -0.214 4.214 22 N -0.541 5.541 23 Si 0.893 3.107 24 H -0.221 1.221 25 H -0.219 1.219 26 H -0.223 1.223 27 C -0.049 4.049 28 C 0.022 3.978 29 H 0.090 0.910 30 O -0.368 6.368 31 H 0.079 0.921 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.113 0.887 35 H 0.098 0.902 36 H 0.116 0.884 37 H 0.123 0.877 38 H 0.237 0.763 39 H 0.116 0.884 40 H 0.130 0.870 41 H 0.057 0.943 42 H 0.071 0.929 43 H 0.077 0.923 44 H 0.067 0.933 45 H 0.067 0.933 46 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 1.254 16.292 -5.918 17.379 hybrid contribution -2.102 -0.058 0.956 2.310 sum -0.849 16.234 -4.962 16.997 Atomic orbital electron populations 1.21674 0.78665 1.03012 1.02436 1.47781 1.07294 1.05483 1.72306 1.20019 0.88743 0.83321 0.76269 1.90707 1.69927 1.30930 1.49337 1.21720 0.93152 1.00634 0.99290 0.86435 1.21542 0.94191 0.93947 1.04517 1.20266 0.92928 0.98645 0.95456 1.24825 0.90247 0.96502 0.97639 1.74048 1.12244 1.15286 1.11716 1.74492 1.21747 1.08389 1.09484 1.26364 0.84094 1.02008 1.00228 1.46098 1.08916 1.31524 1.29521 1.22232 0.76405 1.04047 0.99044 1.22969 0.97600 0.82831 0.95881 0.86997 1.21857 0.98559 0.84550 0.94276 1.44546 1.83617 1.04845 0.99919 1.19916 1.51988 0.85284 0.90326 0.89976 1.25641 0.99452 0.90818 1.05444 1.70921 1.37164 1.30224 1.15808 0.83928 0.76843 0.74429 0.75481 1.22103 1.21891 1.22316 1.22508 1.00506 0.94492 0.87412 1.23214 0.93210 0.94453 0.86954 0.90975 1.86427 1.62524 1.61909 1.25925 0.92110 0.90804 0.90557 0.88714 0.90212 0.88410 0.87718 0.76270 0.88382 0.87017 0.94290 0.92883 0.92282 0.93344 0.93291 0.77081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.90 8.90 59.85 0.53 1.44 16 2 N -0.60 -7.12 2.91 -171.34 -0.50 -7.62 16 3 C 0.53 6.37 6.94 -10.98 -0.08 6.30 16 4 O -0.53 -7.64 15.69 5.56 0.09 -7.55 16 5 C -0.13 -1.28 1.69 -91.53 -0.15 -1.44 16 6 H 0.12 1.26 7.58 -51.93 -0.39 0.87 16 7 C -0.10 -0.92 4.61 -26.42 -0.12 -1.04 16 8 C -0.03 -0.30 6.34 -27.59 -0.17 -0.47 16 9 C 0.18 2.21 7.75 -155.30 -1.20 1.00 16 10 N -0.29 -4.57 12.21 32.76 0.40 -4.17 16 11 N -0.30 -4.74 12.23 29.59 0.36 -4.38 16 12 C 0.16 2.01 12.83 -90.40 -1.16 0.85 16 13 N -0.47 -5.51 3.11 -115.53 -0.36 -5.87 16 14 C 0.11 1.06 5.88 -4.01 -0.02 1.04 16 15 C 0.11 1.51 2.42 -65.66 -0.16 1.35 16 16 H 0.11 1.49 3.93 -51.92 -0.20 1.29 16 17 C 0.13 2.21 6.78 -2.41 -0.02 2.20 16 18 N -0.60 -12.78 3.37 -169.93 -0.57 -13.35 16 19 C -0.35 -9.02 10.42 -15.06 -0.16 -9.18 16 20 H 0.08 2.24 8.06 -52.49 -0.42 1.81 16 21 C -0.01 -0.30 5.44 -17.43 -0.09 -0.39 16 22 N -0.90 -26.37 13.70 55.49 0.76 -25.61 16 23 Si 1.06 24.60 24.66 -169.99 -4.19 20.41 16 24 H -0.29 -6.28 6.40 56.52 0.36 -5.92 16 25 H -0.29 -6.47 6.45 56.52 0.36 -6.10 16 26 H -0.30 -7.08 7.11 56.52 0.40 -6.68 16 27 C 0.08 1.44 4.61 -3.06 -0.01 1.42 16 28 C 0.08 1.16 3.87 -24.89 -0.10 1.07 16 29 H 0.07 0.93 6.54 -51.93 -0.34 0.59 16 30 O -0.56 -7.19 13.39 -35.23 -0.47 -7.67 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.78 7.67 -51.93 -0.40 0.38 16 33 H 0.08 0.77 6.39 -51.93 -0.33 0.44 16 34 H 0.09 0.80 7.96 -51.93 -0.41 0.39 16 35 H 0.08 0.74 8.12 -51.93 -0.42 0.32 16 36 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.22 1.96 8.06 -52.49 -0.42 1.53 16 39 H 0.10 0.89 8.12 -51.93 -0.42 0.46 16 40 H 0.11 1.16 5.46 -51.93 -0.28 0.88 16 41 H 0.04 0.63 6.89 -51.93 -0.36 0.27 16 42 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.27 7.69 8.73 -40.82 -0.36 7.34 16 44 H 0.05 0.98 4.20 -51.93 -0.22 0.76 16 45 H 0.05 0.97 6.93 -51.93 -0.36 0.61 16 46 H 0.38 3.48 9.11 45.56 0.42 3.89 16 LS Contribution 356.03 15.07 5.37 5.37 Total: -1.00 -34.29 356.03 -7.53 -41.82 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -5.49 Total: 4.47 kcal Atomic # 6 Polarization: 7.06 SS G_CDS: -2.92 Total: 4.14 kcal Atomic # 7 Polarization: -61.09 SS G_CDS: 0.09 Total: -61.00 kcal Atomic # 8 Polarization: -14.83 SS G_CDS: -0.38 Total: -15.21 kcal Atomic # 14 Polarization: 24.60 SS G_CDS: -4.19 Total: 20.41 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -34.29 -7.53 -41.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047638724.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.930 kcal (2) G-P(sol) polarization free energy of solvation -34.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds