Wall clock time and date at job start Tue Mar 31 2020 18:25:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46497 * 1
3 3 C 1.34779 * 120.00041 * 2 1
4 4 O 1.21273 * 120.00178 * 5.14707 * 3 2 1
5 5 C 1.50702 * 119.99739 * 185.15003 * 3 2 1
6 6 H 1.08997 * 109.45478 * 50.10620 * 5 3 2
7 7 C 1.53139 * 109.44864 * 170.06254 * 5 3 2
8 8 C 1.53466 * 109.30487 * 189.46043 * 7 5 3
9 9 C 1.50810 * 108.13198 * 311.28336 * 8 7 5
10 10 N 1.29831 * 128.52485 * 195.90132 * 9 8 7
11 11 N 1.28903 * 109.48181 * 179.90755 * 10 9 8
12 12 C 1.30844 * 109.74022 * 0.02562 * 11 10 9
13 13 N 1.34698 * 107.06735 * 0.03641 * 12 11 10
14 14 C 1.46250 * 128.85367 * 179.90184 * 13 12 11
15 15 C 1.46496 * 119.99821 * 180.02562 * 2 1 3
16 16 H 1.09007 * 110.91652 * 184.84209 * 15 2 1
17 17 C 1.55129 * 110.90753 * 308.91681 * 15 2 1
18 18 N 1.47425 * 104.72498 * 155.27592 * 17 15 2
19 19 C 1.36927 * 125.64863 * 155.81476 * 18 17 15
20 20 H 1.08001 * 120.00345 * 356.06175 * 19 18 17
21 21 C 1.38817 * 119.99851 * 176.06285 * 19 18 17
22 22 N 1.31621 * 119.99824 * 211.92838 * 21 19 18
23 23 Si 1.86800 * 119.99958 * 31.93184 * 21 19 18
24 24 H 1.48500 * 109.47024 * 275.64994 * 23 21 19
25 25 H 1.48493 * 109.47342 * 35.65221 * 23 21 19
26 26 H 1.48506 * 109.47183 * 155.65196 * 23 21 19
27 27 C 1.47030 * 108.70117 * 335.55563 * 18 17 15
28 28 C 1.54324 * 107.27247 * 1.28327 * 27 18 17
29 29 H 1.08998 * 110.72114 * 263.66236 * 28 27 18
30 30 O 1.42891 * 110.72033 * 140.55677 * 28 27 18
31 31 H 1.08998 * 109.47148 * 275.31055 * 1 2 3
32 32 H 1.09004 * 109.47371 * 35.30626 * 1 2 3
33 33 H 1.08993 * 109.47529 * 155.31118 * 1 2 3
34 34 H 1.09006 * 109.49825 * 309.39938 * 7 5 3
35 35 H 1.09000 * 109.50407 * 69.47361 * 7 5 3
36 36 H 1.08993 * 109.73436 * 70.94162 * 8 7 5
37 37 H 1.08995 * 109.73119 * 191.58166 * 8 7 5
38 38 H 1.07990 * 126.46385 * 180.02562 * 12 11 10
39 39 H 1.08992 * 109.61159 * 77.34203 * 14 13 12
40 40 H 1.09001 * 109.57035 * 316.88900 * 14 13 12
41 41 H 1.09000 * 110.49589 * 36.43170 * 17 15 2
42 42 H 1.09001 * 110.33783 * 274.03479 * 17 15 2
43 43 H 0.96994 * 120.00112 * 354.98042 * 22 21 19
44 44 H 1.08998 * 109.88274 * 120.70555 * 27 18 17
45 45 H 1.09001 * 109.87835 * 241.87012 * 27 18 17
46 46 H 0.96705 * 113.99710 * 61.46049 * 30 28 27
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1389 1.1672 0.0000
4 8 1.5362 2.2154 0.0942
5 6 3.6413 1.1698 -0.1172
6 1 3.9408 0.5473 -0.9603
7 6 4.1329 2.6027 -0.3412
8 6 5.6260 2.5775 -0.6947
9 6 6.3321 1.7048 0.3123
10 7 7.6033 1.6268 0.5645
11 7 7.8040 0.7616 1.4987
12 6 6.6617 0.2506 1.8806
13 7 5.7002 0.8333 1.1388
14 6 4.2549 0.6123 1.1726
15 6 2.1974 -1.2687 -0.0006
16 1 3.2707 -1.0985 0.0855
17 6 1.6858 -2.2038 1.1265
18 7 2.0167 -3.5640 0.6641
19 6 2.1949 -4.6586 1.4671
20 1 2.1572 -4.5523 2.5412
21 6 2.4242 -5.9050 0.9006
22 7 1.9923 -6.9919 1.5046
23 14 3.3455 -6.0398 -0.7187
24 1 2.3978 -5.8448 -1.8452
25 1 4.4024 -4.9982 -0.7751
26 1 3.9689 -7.3837 -0.8233
27 6 2.1175 -3.5517 -0.8027
28 6 1.8662 -2.1016 -1.2672
29 1 0.8252 -1.9654 -1.5601
30 8 2.7415 -1.7562 -2.3425
31 1 -0.3633 0.0951 1.0232
32 1 -0.3634 0.8387 -0.5939
33 1 -0.3634 -0.9336 -0.4292
34 1 3.5729 3.0557 -1.1594
35 1 3.9836 3.1850 0.5681
36 1 5.7603 2.1671 -1.6955
37 1 6.0309 3.5886 -0.6543
38 1 6.5171 -0.4974 2.6460
39 1 3.8262 1.1258 2.0331
40 1 4.0505 -0.4561 1.2425
41 1 0.6082 -2.0971 1.2512
42 1 2.2003 -1.9857 2.0624
43 1 1.5787 -6.9286 2.3796
44 1 3.1137 -3.8715 -1.1085
45 1 1.3654 -4.2139 -1.2315
46 1 2.6274 -2.3013 -3.1331
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001047638724.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:25:17
Heat of formation + Delta-G solvation = 47.105995 kcal
Electronic energy + Delta-G solvation = -30884.961580 eV
Core-core repulsion = 26812.843267 eV
Total energy + Delta-G solvation = -4072.118314 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 335.174 amu
Computer time = 0.91 seconds
Orbital eigenvalues (eV)
-43.42165 -40.74432 -38.70612 -37.05509 -35.74417 -35.12268 -33.80881 -32.26199
-31.58605 -29.52866 -29.07415 -28.09126 -27.29867 -25.18044 -24.14093 -23.31027
-22.40284 -21.57454 -20.82798 -20.18109 -19.07533 -18.05895 -17.84735 -17.33132
-17.03614 -16.40973 -16.23371 -15.83905 -15.11125 -15.00955 -14.94724 -14.59784
-14.52395 -14.27693 -13.83723 -13.68592 -13.46500 -13.19053 -12.87631 -12.74932
-12.45219 -12.29070 -12.22331 -12.07230 -11.83972 -11.71593 -11.51937 -11.40332
-11.27842 -10.98382 -10.51786 -10.45989 -10.27762 -10.24846 -10.02983 -9.80296
-9.42165 -9.27022 -8.84257 -8.58201 -7.37167 -6.59709 -3.37999 1.71421
2.10477 2.39232 2.68590 2.80191 3.21087 3.34396 3.50658 3.84008
3.93136 4.01904 4.09589 4.17595 4.39245 4.51466 4.56138 4.63518
4.66053 4.70223 4.83611 4.93011 5.00206 5.03759 5.15282 5.19233
5.26306 5.29191 5.33290 5.41886 5.45412 5.49146 5.62207 5.68973
5.76002 5.77240 5.98680 6.04130 6.13058 6.18451 6.25234 6.31460
6.69281 7.09713 7.38764 7.55575 7.84872 8.10499 8.63175 8.79309
9.34801 9.97455 10.91034
Molecular weight = 335.17amu
Principal moments of inertia in cm(-1)
A = 0.011497 B = 0.004513 C = 0.003729
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2434.834145 B = 6203.462331 C = 7507.581992
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.084 3.916
2 N -0.597 5.597
3 C 0.530 3.470
4 O -0.533 6.533
5 C -0.126 4.126
6 H 0.118 0.882
7 C -0.104 4.104
8 C -0.033 4.033
9 C 0.176 3.824
10 N -0.293 5.293
11 N -0.302 5.302
12 C 0.161 3.839
13 N -0.470 5.470
14 C 0.106 3.894
15 C 0.112 3.888
16 H 0.113 0.887
17 C 0.135 3.865
18 N -0.600 5.600
19 C -0.349 4.349
20 H 0.082 0.918
21 C -0.011 4.011
22 N -0.902 5.902
23 Si 1.060 2.940
24 H -0.293 1.293
25 H -0.291 1.291
26 H -0.296 1.296
27 C 0.077 3.923
28 C 0.082 3.918
29 H 0.073 0.927
30 O -0.562 6.562
31 H 0.060 0.940
32 H 0.073 0.927
33 H 0.076 0.924
34 H 0.094 0.906
35 H 0.079 0.921
36 H 0.098 0.902
37 H 0.105 0.895
38 H 0.221 0.779
39 H 0.098 0.902
40 H 0.112 0.888
41 H 0.039 0.961
42 H 0.053 0.947
43 H 0.267 0.733
44 H 0.049 0.951
45 H 0.049 0.951
46 H 0.381 0.619
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.612 16.226 -5.291 17.078
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.058 4.058
2 N -0.329 5.329
3 C 0.316 3.684
4 O -0.409 6.409
5 C -0.148 4.148
6 H 0.136 0.864
7 C -0.142 4.142
8 C -0.073 4.073
9 C -0.092 4.092
10 N -0.133 5.133
11 N -0.141 5.141
12 C -0.127 4.127
13 N -0.161 5.161
14 C -0.017 4.017
15 C 0.007 3.993
16 H 0.130 0.870
17 C 0.008 3.992
18 N -0.329 5.329
19 C -0.475 4.475
20 H 0.100 0.900
21 C -0.214 4.214
22 N -0.541 5.541
23 Si 0.893 3.107
24 H -0.221 1.221
25 H -0.219 1.219
26 H -0.223 1.223
27 C -0.049 4.049
28 C 0.022 3.978
29 H 0.090 0.910
30 O -0.368 6.368
31 H 0.079 0.921
32 H 0.092 0.908
33 H 0.094 0.906
34 H 0.113 0.887
35 H 0.098 0.902
36 H 0.116 0.884
37 H 0.123 0.877
38 H 0.237 0.763
39 H 0.116 0.884
40 H 0.130 0.870
41 H 0.057 0.943
42 H 0.071 0.929
43 H 0.077 0.923
44 H 0.067 0.933
45 H 0.067 0.933
46 H 0.229 0.771
Dipole moment (debyes) X Y Z Total
from point charges 1.254 16.292 -5.918 17.379
hybrid contribution -2.102 -0.058 0.956 2.310
sum -0.849 16.234 -4.962 16.997
Atomic orbital electron populations
1.21674 0.78665 1.03012 1.02436 1.47781 1.07294 1.05483 1.72306
1.20019 0.88743 0.83321 0.76269 1.90707 1.69927 1.30930 1.49337
1.21720 0.93152 1.00634 0.99290 0.86435 1.21542 0.94191 0.93947
1.04517 1.20266 0.92928 0.98645 0.95456 1.24825 0.90247 0.96502
0.97639 1.74048 1.12244 1.15286 1.11716 1.74492 1.21747 1.08389
1.09484 1.26364 0.84094 1.02008 1.00228 1.46098 1.08916 1.31524
1.29521 1.22232 0.76405 1.04047 0.99044 1.22969 0.97600 0.82831
0.95881 0.86997 1.21857 0.98559 0.84550 0.94276 1.44546 1.83617
1.04845 0.99919 1.19916 1.51988 0.85284 0.90326 0.89976 1.25641
0.99452 0.90818 1.05444 1.70921 1.37164 1.30224 1.15808 0.83928
0.76843 0.74429 0.75481 1.22103 1.21891 1.22316 1.22508 1.00506
0.94492 0.87412 1.23214 0.93210 0.94453 0.86954 0.90975 1.86427
1.62524 1.61909 1.25925 0.92110 0.90804 0.90557 0.88714 0.90212
0.88410 0.87718 0.76270 0.88382 0.87017 0.94290 0.92883 0.92282
0.93344 0.93291 0.77081
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.08 0.90 8.90 59.85 0.53 1.44 16
2 N -0.60 -7.12 2.91 -171.34 -0.50 -7.62 16
3 C 0.53 6.37 6.94 -10.98 -0.08 6.30 16
4 O -0.53 -7.64 15.69 5.56 0.09 -7.55 16
5 C -0.13 -1.28 1.69 -91.53 -0.15 -1.44 16
6 H 0.12 1.26 7.58 -51.93 -0.39 0.87 16
7 C -0.10 -0.92 4.61 -26.42 -0.12 -1.04 16
8 C -0.03 -0.30 6.34 -27.59 -0.17 -0.47 16
9 C 0.18 2.21 7.75 -155.30 -1.20 1.00 16
10 N -0.29 -4.57 12.21 32.76 0.40 -4.17 16
11 N -0.30 -4.74 12.23 29.59 0.36 -4.38 16
12 C 0.16 2.01 12.83 -90.40 -1.16 0.85 16
13 N -0.47 -5.51 3.11 -115.53 -0.36 -5.87 16
14 C 0.11 1.06 5.88 -4.01 -0.02 1.04 16
15 C 0.11 1.51 2.42 -65.66 -0.16 1.35 16
16 H 0.11 1.49 3.93 -51.92 -0.20 1.29 16
17 C 0.13 2.21 6.78 -2.41 -0.02 2.20 16
18 N -0.60 -12.78 3.37 -169.93 -0.57 -13.35 16
19 C -0.35 -9.02 10.42 -15.06 -0.16 -9.18 16
20 H 0.08 2.24 8.06 -52.49 -0.42 1.81 16
21 C -0.01 -0.30 5.44 -17.43 -0.09 -0.39 16
22 N -0.90 -26.37 13.70 55.49 0.76 -25.61 16
23 Si 1.06 24.60 24.66 -169.99 -4.19 20.41 16
24 H -0.29 -6.28 6.40 56.52 0.36 -5.92 16
25 H -0.29 -6.47 6.45 56.52 0.36 -6.10 16
26 H -0.30 -7.08 7.11 56.52 0.40 -6.68 16
27 C 0.08 1.44 4.61 -3.06 -0.01 1.42 16
28 C 0.08 1.16 3.87 -24.89 -0.10 1.07 16
29 H 0.07 0.93 6.54 -51.93 -0.34 0.59 16
30 O -0.56 -7.19 13.39 -35.23 -0.47 -7.67 16
31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16
32 H 0.07 0.78 7.67 -51.93 -0.40 0.38 16
33 H 0.08 0.77 6.39 -51.93 -0.33 0.44 16
34 H 0.09 0.80 7.96 -51.93 -0.41 0.39 16
35 H 0.08 0.74 8.12 -51.93 -0.42 0.32 16
36 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16
37 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16
38 H 0.22 1.96 8.06 -52.49 -0.42 1.53 16
39 H 0.10 0.89 8.12 -51.93 -0.42 0.46 16
40 H 0.11 1.16 5.46 -51.93 -0.28 0.88 16
41 H 0.04 0.63 6.89 -51.93 -0.36 0.27 16
42 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16
43 H 0.27 7.69 8.73 -40.82 -0.36 7.34 16
44 H 0.05 0.98 4.20 -51.93 -0.22 0.76 16
45 H 0.05 0.97 6.93 -51.93 -0.36 0.61 16
46 H 0.38 3.48 9.11 45.56 0.42 3.89 16
LS Contribution 356.03 15.07 5.37 5.37
Total: -1.00 -34.29 356.03 -7.53 -41.82
By element:
Atomic # 1 Polarization: 9.97 SS G_CDS: -5.49 Total: 4.47 kcal
Atomic # 6 Polarization: 7.06 SS G_CDS: -2.92 Total: 4.14 kcal
Atomic # 7 Polarization: -61.09 SS G_CDS: 0.09 Total: -61.00 kcal
Atomic # 8 Polarization: -14.83 SS G_CDS: -0.38 Total: -15.21 kcal
Atomic # 14 Polarization: 24.60 SS G_CDS: -4.19 Total: 20.41 kcal
Total LS contribution 5.37 Total: 5.37 kcal
Total: -34.29 -7.53 -41.82 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001047638724.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 88.930 kcal
(2) G-P(sol) polarization free energy of solvation -34.291 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.639 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.533 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.824 kcal
(6) G-S(sol) free energy of system = (1) + (5) 47.106 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.92 seconds