Wall clock time and date at job start Tue Mar 31 2020 18:25:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34779 * 120.00041 * 2 1 4 4 O 1.21273 * 120.00178 * 5.14707 * 3 2 1 5 5 C 1.50702 * 119.99739 * 185.15003 * 3 2 1 6 6 H 1.08997 * 109.45478 * 50.10620 * 5 3 2 7 7 C 1.53139 * 109.44864 * 170.06254 * 5 3 2 8 8 C 1.53466 * 109.30487 * 189.46043 * 7 5 3 9 9 C 1.50810 * 108.13198 * 311.28336 * 8 7 5 10 10 N 1.29831 * 128.52485 * 195.90132 * 9 8 7 11 11 N 1.28903 * 109.48181 * 179.90755 * 10 9 8 12 12 C 1.30844 * 109.74022 * 0.02562 * 11 10 9 13 13 N 1.34698 * 107.06735 * 0.03641 * 12 11 10 14 14 C 1.46250 * 128.85367 * 179.90184 * 13 12 11 15 15 C 1.46496 * 119.99821 * 180.02562 * 2 1 3 16 16 H 1.09007 * 110.91652 * 184.84209 * 15 2 1 17 17 C 1.55129 * 110.90753 * 308.91681 * 15 2 1 18 18 N 1.47425 * 104.72498 * 155.27592 * 17 15 2 19 19 C 1.36927 * 125.64863 * 155.81476 * 18 17 15 20 20 H 1.08001 * 120.00345 * 356.06175 * 19 18 17 21 21 C 1.38817 * 119.99851 * 176.06285 * 19 18 17 22 22 N 1.31621 * 119.99824 * 211.92838 * 21 19 18 23 23 Si 1.86800 * 119.99958 * 31.93184 * 21 19 18 24 24 H 1.48500 * 109.47024 * 275.64994 * 23 21 19 25 25 H 1.48493 * 109.47342 * 35.65221 * 23 21 19 26 26 H 1.48506 * 109.47183 * 155.65196 * 23 21 19 27 27 C 1.47030 * 108.70117 * 335.55563 * 18 17 15 28 28 C 1.54324 * 107.27247 * 1.28327 * 27 18 17 29 29 H 1.08998 * 110.72114 * 263.66236 * 28 27 18 30 30 O 1.42891 * 110.72033 * 140.55677 * 28 27 18 31 31 H 1.08998 * 109.47148 * 275.31055 * 1 2 3 32 32 H 1.09004 * 109.47371 * 35.30626 * 1 2 3 33 33 H 1.08993 * 109.47529 * 155.31118 * 1 2 3 34 34 H 1.09006 * 109.49825 * 309.39938 * 7 5 3 35 35 H 1.09000 * 109.50407 * 69.47361 * 7 5 3 36 36 H 1.08993 * 109.73436 * 70.94162 * 8 7 5 37 37 H 1.08995 * 109.73119 * 191.58166 * 8 7 5 38 38 H 1.07990 * 126.46385 * 180.02562 * 12 11 10 39 39 H 1.08992 * 109.61159 * 77.34203 * 14 13 12 40 40 H 1.09001 * 109.57035 * 316.88900 * 14 13 12 41 41 H 1.09000 * 110.49589 * 36.43170 * 17 15 2 42 42 H 1.09001 * 110.33783 * 274.03479 * 17 15 2 43 43 H 0.96994 * 120.00112 * 354.98042 * 22 21 19 44 44 H 1.08998 * 109.88274 * 120.70555 * 27 18 17 45 45 H 1.09001 * 109.87835 * 241.87012 * 27 18 17 46 46 H 0.96705 * 113.99710 * 61.46049 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5362 2.2154 0.0942 5 6 3.6413 1.1698 -0.1172 6 1 3.9408 0.5473 -0.9603 7 6 4.1329 2.6027 -0.3412 8 6 5.6260 2.5775 -0.6947 9 6 6.3321 1.7048 0.3123 10 7 7.6033 1.6268 0.5645 11 7 7.8040 0.7616 1.4987 12 6 6.6617 0.2506 1.8806 13 7 5.7002 0.8333 1.1388 14 6 4.2549 0.6123 1.1726 15 6 2.1974 -1.2687 -0.0006 16 1 3.2707 -1.0985 0.0855 17 6 1.6858 -2.2038 1.1265 18 7 2.0167 -3.5640 0.6641 19 6 2.1949 -4.6586 1.4671 20 1 2.1572 -4.5523 2.5412 21 6 2.4242 -5.9050 0.9006 22 7 1.9923 -6.9919 1.5046 23 14 3.3455 -6.0398 -0.7187 24 1 2.3978 -5.8448 -1.8452 25 1 4.4024 -4.9982 -0.7751 26 1 3.9689 -7.3837 -0.8233 27 6 2.1175 -3.5517 -0.8027 28 6 1.8662 -2.1016 -1.2672 29 1 0.8252 -1.9654 -1.5601 30 8 2.7415 -1.7562 -2.3425 31 1 -0.3633 0.0951 1.0232 32 1 -0.3634 0.8387 -0.5939 33 1 -0.3634 -0.9336 -0.4292 34 1 3.5729 3.0557 -1.1594 35 1 3.9836 3.1850 0.5681 36 1 5.7603 2.1671 -1.6955 37 1 6.0309 3.5886 -0.6543 38 1 6.5171 -0.4974 2.6460 39 1 3.8262 1.1258 2.0331 40 1 4.0505 -0.4561 1.2425 41 1 0.6082 -2.0971 1.2512 42 1 2.2003 -1.9857 2.0624 43 1 1.5787 -6.9286 2.3796 44 1 3.1137 -3.8715 -1.1085 45 1 1.3654 -4.2139 -1.2315 46 1 2.6274 -2.3013 -3.1331 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047638724.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:16 Heat of formation + Delta-G solvation = 21.964754 kcal Electronic energy + Delta-G solvation = -30886.051786 eV Core-core repulsion = 26812.843267 eV Total energy + Delta-G solvation = -4073.208520 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.37624 -41.74914 -39.89879 -37.94567 -36.84327 -36.43850 -34.66794 -34.10602 -32.48389 -30.61242 -30.35988 -29.42951 -28.21814 -26.14103 -25.63411 -24.20089 -23.36200 -22.84210 -22.29885 -21.09119 -20.05239 -19.61825 -19.02670 -18.34000 -18.10844 -17.37963 -17.29708 -16.76972 -16.44526 -16.26622 -15.91883 -15.69554 -15.35207 -15.33507 -15.24792 -14.90606 -14.59713 -14.49849 -14.13920 -13.90560 -13.50850 -13.34448 -13.27204 -13.03801 -12.99706 -12.88628 -12.68728 -12.50919 -12.32406 -12.10349 -11.98120 -11.71451 -11.51801 -11.43965 -11.18647 -11.04097 -10.95507 -10.52573 -10.25370 -9.87178 -9.18508 -8.70456 -5.39646 0.80013 1.18957 1.36505 1.48591 1.50712 1.66167 1.73594 1.79370 2.49404 2.81595 3.00263 3.06765 3.11096 3.26184 3.31774 3.39919 3.56094 3.65866 3.71765 3.80724 3.94367 3.95378 4.04629 4.13389 4.23391 4.29732 4.36180 4.41521 4.53352 4.58734 4.66170 4.70412 4.75936 4.81302 4.90516 4.91737 4.93854 4.98541 5.04749 5.15295 5.27047 5.55278 5.82174 6.05778 6.13819 6.72131 6.79110 6.90472 7.43855 7.63911 8.06254 8.82034 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011497 B = 0.004513 C = 0.003729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2434.834145 B = 6203.462331 C = 7507.581992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.594 5.594 3 C 0.535 3.465 4 O -0.553 6.553 5 C -0.121 4.121 6 H 0.119 0.881 7 C -0.095 4.095 8 C -0.029 4.029 9 C 0.179 3.821 10 N -0.334 5.334 11 N -0.345 5.345 12 C 0.164 3.836 13 N -0.470 5.470 14 C 0.108 3.892 15 C 0.129 3.871 16 H 0.118 0.882 17 C 0.131 3.869 18 N -0.621 5.621 19 C -0.329 4.329 20 H 0.056 0.944 21 C -0.068 4.068 22 N -0.945 5.945 23 Si 1.099 2.901 24 H -0.265 1.265 25 H -0.276 1.276 26 H -0.311 1.311 27 C 0.070 3.930 28 C 0.098 3.902 29 H 0.092 0.908 30 O -0.563 6.563 31 H 0.064 0.936 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.104 0.896 35 H 0.076 0.924 36 H 0.112 0.888 37 H 0.121 0.879 38 H 0.249 0.751 39 H 0.110 0.890 40 H 0.110 0.890 41 H 0.047 0.953 42 H 0.055 0.945 43 H 0.252 0.748 44 H 0.041 0.959 45 H 0.039 0.961 46 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.147 18.337 -7.171 19.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.325 5.325 3 C 0.323 3.677 4 O -0.431 6.431 5 C -0.143 4.143 6 H 0.137 0.863 7 C -0.134 4.134 8 C -0.068 4.068 9 C -0.090 4.090 10 N -0.173 5.173 11 N -0.183 5.183 12 C -0.125 4.125 13 N -0.160 5.160 14 C -0.014 4.014 15 C 0.024 3.976 16 H 0.136 0.864 17 C 0.005 3.995 18 N -0.349 5.349 19 C -0.457 4.457 20 H 0.074 0.926 21 C -0.264 4.264 22 N -0.587 5.587 23 Si 0.927 3.073 24 H -0.190 1.190 25 H -0.202 1.202 26 H -0.240 1.240 27 C -0.056 4.056 28 C 0.037 3.963 29 H 0.110 0.890 30 O -0.371 6.371 31 H 0.082 0.918 32 H 0.096 0.904 33 H 0.102 0.898 34 H 0.122 0.878 35 H 0.095 0.905 36 H 0.130 0.870 37 H 0.139 0.861 38 H 0.265 0.735 39 H 0.128 0.872 40 H 0.128 0.872 41 H 0.065 0.935 42 H 0.074 0.926 43 H 0.062 0.938 44 H 0.058 0.942 45 H 0.057 0.943 46 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 0.704 18.464 -7.827 20.067 hybrid contribution -2.009 -0.636 1.625 2.661 sum -1.306 17.828 -6.202 18.921 Atomic orbital electron populations 1.21794 0.77884 1.03619 1.02904 1.47737 1.07758 1.04831 1.72147 1.20204 0.89274 0.82792 0.75459 1.90711 1.70536 1.31530 1.50280 1.21692 0.91812 1.01544 0.99218 0.86347 1.21497 0.94085 0.93036 1.04760 1.20442 0.92415 0.98929 0.95032 1.25449 0.89755 0.96221 0.97564 1.73958 1.14090 1.16452 1.12779 1.74400 1.23588 1.09659 1.10645 1.26916 0.83582 1.01785 1.00220 1.46200 1.09401 1.31223 1.29206 1.22289 0.75444 1.04076 0.99595 1.22610 0.97862 0.82848 0.94321 0.86447 1.21989 0.99023 0.82915 0.95576 1.44524 1.83621 1.05670 1.01132 1.19815 1.49093 0.86931 0.89849 0.92628 1.26757 1.00429 0.90868 1.08378 1.71033 1.40244 1.31487 1.15954 0.83427 0.76567 0.73859 0.73454 1.19045 1.20247 1.24033 1.22637 0.99573 0.97699 0.85677 1.23018 0.94517 0.91210 0.87569 0.89005 1.86404 1.62228 1.62133 1.26293 0.91769 0.90356 0.89822 0.87773 0.90522 0.86965 0.86134 0.73541 0.87211 0.87190 0.93483 0.92625 0.93815 0.94189 0.94284 0.74954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.45 8.90 127.77 1.14 2.59 16 2 N -0.59 -12.14 2.91 -814.40 -2.37 -14.51 16 3 C 0.54 11.10 6.94 87.66 0.61 11.70 16 4 O -0.55 -14.16 15.69 -3.01 -0.05 -14.21 16 5 C -0.12 -2.07 1.69 -11.39 -0.02 -2.09 16 6 H 0.12 2.08 7.58 -2.39 -0.02 2.07 16 7 C -0.10 -1.40 4.61 30.80 0.14 -1.25 16 8 C -0.03 -0.43 6.34 30.04 0.19 -0.24 16 9 C 0.18 4.17 7.75 138.14 1.07 5.24 16 10 N -0.33 -10.17 12.21 -50.27 -0.61 -10.79 16 11 N -0.34 -10.68 12.23 -60.31 -0.74 -11.42 16 12 C 0.16 3.88 12.83 180.27 2.31 6.19 16 13 N -0.47 -10.06 3.11 -519.41 -1.62 -11.68 16 14 C 0.11 1.88 5.88 86.53 0.51 2.39 16 15 C 0.13 3.05 2.42 46.46 0.11 3.16 16 16 H 0.12 2.73 3.93 -2.38 -0.01 2.72 16 17 C 0.13 4.02 6.78 86.93 0.59 4.61 16 18 N -0.62 -25.55 3.37 -691.53 -2.33 -27.88 16 19 C -0.33 -17.10 10.42 84.04 0.88 -16.23 16 20 H 0.06 3.11 8.06 -2.91 -0.02 3.09 16 21 C -0.07 -3.76 5.44 84.86 0.46 -3.30 16 22 N -0.94 -56.90 13.70 21.65 0.30 -56.61 16 23 Si 1.10 49.31 24.66 68.60 1.69 51.01 16 24 H -0.26 -10.51 6.40 99.48 0.64 -9.88 16 25 H -0.28 -11.51 6.45 99.48 0.64 -10.86 16 26 H -0.31 -14.69 7.11 99.48 0.71 -13.99 16 27 C 0.07 2.43 4.61 86.73 0.40 2.83 16 28 C 0.10 2.40 3.87 31.79 0.12 2.52 16 29 H 0.09 1.95 6.54 -2.39 -0.02 1.94 16 30 O -0.56 -11.93 13.39 -148.98 -1.99 -13.92 16 31 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.08 1.40 7.67 -2.39 -0.02 1.38 16 33 H 0.08 1.41 6.39 -2.39 -0.02 1.39 16 34 H 0.10 1.39 7.96 -2.38 -0.02 1.37 16 35 H 0.08 1.20 8.12 -2.39 -0.02 1.18 16 36 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.12 1.44 8.14 -2.39 -0.02 1.43 16 38 H 0.25 3.98 8.06 -2.92 -0.02 3.96 16 39 H 0.11 1.67 8.12 -2.39 -0.02 1.66 16 40 H 0.11 1.98 5.46 -2.39 -0.01 1.97 16 41 H 0.05 1.40 6.89 -2.39 -0.02 1.38 16 42 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 43 H 0.25 15.24 8.73 -92.71 -0.81 14.43 16 44 H 0.04 1.50 4.20 -2.39 -0.01 1.49 16 45 H 0.04 1.45 6.93 -2.39 -0.02 1.44 16 46 H 0.40 5.48 9.11 -74.05 -0.67 4.81 16 Total: -1.00 -75.73 356.03 0.97 -74.76 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: 0.19 Total: 17.12 kcal Atomic # 6 Polarization: 9.61 SS G_CDS: 8.51 Total: 18.12 kcal Atomic # 7 Polarization: -125.51 SS G_CDS: -7.37 Total: -132.88 kcal Atomic # 8 Polarization: -26.08 SS G_CDS: -2.04 Total: -28.13 kcal Atomic # 14 Polarization: 49.31 SS G_CDS: 1.69 Total: 51.01 kcal Total: -75.73 0.97 -74.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047638724.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.727 kcal (2) G-P(sol) polarization free energy of solvation -75.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds