Wall clock time and date at job start Tue Mar 31 2020 18:30:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42894 * 113.99701 * 2 1 4 4 H 1.09006 * 110.89065 * 32.42412 * 3 2 1 5 5 C 1.55404 * 111.07032 * 156.20790 * 3 2 1 6 6 C 1.54323 * 102.82692 * 153.48426 * 5 3 2 7 7 H 1.08998 * 109.88227 * 97.47189 * 6 5 3 8 8 C 1.50706 * 109.88260 * 218.48533 * 6 5 3 9 9 N 1.30707 * 125.52584 * 74.70864 * 8 6 5 10 10 N 1.40449 * 106.79106 * 179.97438 * 9 8 6 11 11 H 0.97000 * 126.82474 * 179.97438 * 10 9 8 12 12 C 1.34435 * 106.35074 * 0.02562 * 10 9 8 13 13 C 1.50701 * 125.95663 * 179.97438 * 12 10 9 14 14 N 1.46501 * 109.47066 * 95.02164 * 13 12 10 15 15 C 1.34774 * 120.00405 * 179.97438 * 14 13 12 16 16 O 1.21288 * 119.99499 * 359.97438 * 15 14 13 17 17 C 1.50701 * 120.00330 * 180.02562 * 15 14 13 18 18 C 1.53000 * 117.49727 * 179.97438 * 17 15 14 19 19 C 1.53002 * 60.02940 * 107.49982 * 18 17 15 20 20 N 1.30824 * 108.08011 * 0.23646 * 12 10 9 21 21 N 1.47029 * 107.40568 * 337.97744 * 6 5 3 22 22 C 1.36929 * 125.64988 * 178.82688 * 21 6 5 23 23 H 1.07999 * 120.00114 * 359.97438 * 22 21 6 24 24 C 1.38815 * 120.00011 * 180.02562 * 22 21 6 25 25 N 1.31619 * 119.99889 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 120.00033 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47583 * 59.99435 * 26 24 22 28 28 H 1.48497 * 109.47153 * 180.02562 * 26 24 22 29 29 H 1.48505 * 109.47235 * 299.99462 * 26 24 22 30 30 C 1.47421 * 108.69774 * 358.86595 * 21 6 5 31 31 H 1.08994 * 109.47586 * 60.00439 * 1 2 3 32 32 H 1.09010 * 109.46962 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47488 * 299.99870 * 1 2 3 34 34 H 1.09007 * 110.69422 * 35.20075 * 5 3 2 35 35 H 1.08997 * 110.85330 * 271.84732 * 5 3 2 36 36 H 1.09001 * 109.47682 * 335.02482 * 13 12 10 37 37 H 1.08998 * 109.47249 * 215.01881 * 13 12 10 38 38 H 0.97005 * 120.00164 * 0.02562 * 14 13 12 39 39 H 1.08999 * 115.54923 * 34.33147 * 17 15 14 40 40 H 1.09002 * 117.49833 * 215.00087 * 18 17 15 41 41 H 1.09002 * 117.49953 * 0.02562 * 18 17 15 42 42 H 1.09000 * 117.49996 * 107.50493 * 19 18 17 43 43 H 1.08999 * 117.49664 * 252.51862 * 19 18 17 44 44 H 0.96994 * 120.00221 * 180.02562 * 25 24 22 45 45 H 1.09002 * 110.36882 * 142.97147 * 30 21 6 46 46 H 1.09005 * 110.36765 * 265.28923 * 30 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3829 2.0101 0.5460 5 6 3.4496 1.2762 0.5850 6 6 4.1209 2.4875 -0.0960 7 1 4.0962 3.3488 0.5716 8 6 5.5475 2.1523 -0.4474 9 7 5.9260 1.3816 -1.4328 10 7 7.3295 1.3414 -1.4006 11 1 7.9112 0.8530 -2.0038 12 6 7.7066 2.1136 -0.3667 13 6 9.1247 2.3796 0.0681 14 7 9.5947 3.6287 -0.5361 15 6 10.8433 4.0703 -0.2863 16 8 11.5777 3.4337 0.4391 17 6 11.3264 5.3555 -0.9075 18 6 12.7533 5.8034 -0.5847 19 6 12.4194 5.2580 -1.9746 20 7 6.6274 2.5894 0.1994 21 7 3.3604 2.7814 -1.3195 22 6 3.6216 3.8003 -2.1961 23 1 4.4476 4.4716 -2.0133 24 6 2.8240 3.9712 -3.3194 25 7 1.8170 3.1535 -3.5420 26 14 3.1808 5.3608 -4.5156 27 1 4.5494 5.1989 -5.0687 28 1 2.1917 5.3271 -5.6227 29 1 3.0844 6.6618 -3.8060 30 6 2.2695 1.7978 -1.4457 31 1 -0.3634 0.5137 -0.8900 32 1 -0.3633 -1.0278 0.0005 33 1 -0.3634 0.5138 0.8900 34 1 3.9572 0.3507 0.3130 35 1 3.4312 1.4036 1.6674 36 1 9.7639 1.5574 -0.2539 37 1 9.1619 2.4649 1.1541 38 1 9.0068 4.1385 -1.1155 39 1 10.5710 6.1318 -1.0295 40 1 12.9366 6.8742 -0.4948 41 1 13.3428 5.1683 0.0766 42 1 12.3831 5.9698 -2.7993 43 1 12.7888 4.2641 -2.2273 44 1 1.2599 3.2726 -4.3270 45 1 1.3758 2.2723 -1.8510 46 1 2.5794 0.9668 -2.0795 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070358680.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:59 Heat of formation + Delta-G solvation = 66.771123 kcal Electronic energy + Delta-G solvation = -28801.495619 eV Core-core repulsion = 24730.230049 eV Total energy + Delta-G solvation = -4071.265570 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.82767 -40.11128 -38.26204 -36.62207 -36.01005 -35.07225 -32.75985 -31.99515 -31.20698 -29.19430 -28.02036 -27.14704 -26.04290 -24.41457 -24.07217 -22.73782 -22.16127 -20.79844 -20.33930 -20.29927 -19.22213 -18.07696 -17.45544 -16.92620 -16.43694 -16.06669 -15.61727 -15.33105 -15.13573 -14.91707 -14.42379 -14.26315 -14.23608 -13.87678 -13.55469 -13.37493 -13.02510 -12.82203 -12.53752 -12.11363 -11.87811 -11.87209 -11.57062 -11.30875 -11.05334 -10.96801 -10.95293 -10.85569 -10.83393 -10.60683 -10.23605 -10.18704 -9.92858 -9.87813 -9.68124 -9.60962 -9.40553 -9.15271 -8.79467 -8.69905 -7.00333 -5.72516 -3.16536 1.74109 2.22871 2.77956 2.98979 3.34442 3.37340 3.39979 3.41712 3.55153 4.00485 4.27086 4.37724 4.45261 4.48370 4.56789 4.79042 4.84987 5.01218 5.27297 5.27726 5.36887 5.46936 5.47943 5.49459 5.60643 5.61564 5.69773 5.76128 5.77877 5.80004 5.94103 6.03481 6.05250 6.13023 6.34772 6.50218 6.64276 6.80274 6.87581 7.17477 7.29235 7.35108 7.52790 7.75659 7.90115 7.92695 8.24966 8.51692 9.12071 9.71616 10.33431 11.30237 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011759 B = 0.003076 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2380.557756 B = 9101.717218 C =11027.990345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.384 6.384 3 C 0.058 3.942 4 H 0.065 0.935 5 C -0.112 4.112 6 C 0.245 3.755 7 H 0.071 0.929 8 C 0.230 3.770 9 N -0.266 5.266 10 N -0.483 5.483 11 H 0.434 0.566 12 C 0.237 3.763 13 C 0.209 3.791 14 N -0.720 5.720 15 C 0.548 3.452 16 O -0.542 6.542 17 C -0.196 4.196 18 C -0.146 4.146 19 C -0.153 4.153 20 N -0.519 5.519 21 N -0.575 5.575 22 C -0.221 4.221 23 H 0.075 0.925 24 C -0.003 4.003 25 N -0.917 5.917 26 Si 0.915 3.085 27 H -0.287 1.287 28 H -0.289 1.289 29 H -0.283 1.283 30 C 0.138 3.862 31 H 0.046 0.954 32 H 0.076 0.924 33 H 0.034 0.966 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.088 0.912 37 H 0.104 0.896 38 H 0.409 0.591 39 H 0.127 0.873 40 H 0.103 0.897 41 H 0.108 0.892 42 H 0.105 0.895 43 H 0.099 0.901 44 H 0.254 0.746 45 H 0.111 0.889 46 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.772 0.129 5.681 13.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.302 6.302 3 C 0.000 4.000 4 H 0.083 0.917 5 C -0.151 4.151 6 C 0.132 3.868 7 H 0.089 0.911 8 C -0.055 4.055 9 N -0.093 5.093 10 N -0.203 5.203 11 H 0.278 0.722 12 C -0.043 4.043 13 C 0.083 3.917 14 N -0.373 5.373 15 C 0.335 3.665 16 O -0.419 6.419 17 C -0.217 4.217 18 C -0.184 4.184 19 C -0.190 4.190 20 N -0.249 5.249 21 N -0.298 5.298 22 C -0.349 4.349 23 H 0.093 0.907 24 C -0.199 4.199 25 N -0.564 5.564 26 Si 0.745 3.255 27 H -0.214 1.214 28 H -0.214 1.214 29 H -0.210 1.210 30 C 0.013 3.987 31 H 0.064 0.936 32 H 0.095 0.905 33 H 0.053 0.947 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.106 0.894 37 H 0.122 0.878 38 H 0.244 0.756 39 H 0.145 0.855 40 H 0.122 0.878 41 H 0.126 0.874 42 H 0.123 0.877 43 H 0.118 0.882 44 H 0.065 0.935 45 H 0.128 0.872 46 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 12.693 -0.543 5.803 13.967 hybrid contribution 0.289 0.805 -1.492 1.720 sum 12.981 0.262 4.311 13.681 Atomic orbital electron populations 1.22677 0.81786 1.01687 1.00023 1.87806 1.19109 1.28185 1.95140 1.23787 0.92872 0.83431 0.99949 0.91662 1.22614 0.95403 0.98101 0.98978 1.19463 0.81258 0.95537 0.90502 0.91147 1.25969 0.97760 0.92313 0.89505 1.78333 0.85675 1.23393 1.21888 1.48279 1.07178 1.39175 1.25621 0.72164 1.23914 0.96554 0.94593 0.89215 1.19501 0.84916 0.87264 1.00042 1.45889 1.15071 1.25075 1.51258 1.19644 0.80867 0.85632 0.80339 1.90706 1.55382 1.58242 1.37539 1.22198 0.94746 0.97986 1.06752 1.22963 0.94797 1.02015 0.98593 1.22967 0.99745 1.03547 0.92765 1.70374 0.96595 1.27162 1.30787 1.44423 1.29965 1.32019 1.23436 1.18914 1.11333 1.03676 1.00953 0.90737 1.24762 0.97949 0.99050 0.98160 1.69778 1.19650 1.38323 1.28663 0.86157 0.77231 0.81515 0.80569 1.21428 1.21445 1.20985 1.22398 0.94430 0.91731 0.90118 0.93553 0.90543 0.94748 0.90708 0.90971 0.89391 0.87793 0.75610 0.85520 0.87820 0.87353 0.87661 0.88227 0.93529 0.87167 0.95602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.53 10.89 101.05 1.10 1.63 16 2 O -0.38 -7.28 10.52 -35.23 -0.37 -7.65 16 3 C 0.06 1.16 3.49 -24.45 -0.09 1.07 16 4 H 0.07 1.22 7.90 -51.93 -0.41 0.81 16 5 C -0.11 -2.11 6.23 -24.76 -0.15 -2.27 16 6 C 0.24 5.20 3.66 -68.10 -0.25 4.95 16 7 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 8 C 0.23 4.74 6.56 -156.85 -1.03 3.71 16 9 N -0.27 -5.50 12.77 32.42 0.41 -5.08 16 10 N -0.48 -7.37 7.45 32.62 0.24 -7.13 16 11 H 0.43 4.97 8.96 -182.33 -1.63 3.34 16 12 C 0.24 3.47 7.60 -155.70 -1.18 2.28 16 13 C 0.21 2.33 6.30 -5.19 -0.03 2.30 16 14 N -0.72 -7.70 5.55 -61.47 -0.34 -8.04 16 15 C 0.55 6.20 7.61 -10.99 -0.08 6.11 16 16 O -0.54 -7.76 16.26 5.55 0.09 -7.67 16 17 C -0.20 -1.69 6.19 -91.74 -0.57 -2.26 16 18 C -0.15 -1.13 10.04 -26.73 -0.27 -1.40 16 19 C -0.15 -1.11 10.24 -26.69 -0.27 -1.38 16 20 N -0.52 -9.46 11.19 -8.16 -0.09 -9.55 16 21 N -0.58 -14.35 3.10 -163.87 -0.51 -14.86 16 22 C -0.22 -5.99 9.95 -15.06 -0.15 -6.14 16 23 H 0.07 2.01 7.83 -52.49 -0.41 1.60 16 24 C 0.00 -0.09 5.49 -17.43 -0.10 -0.18 16 25 N -0.92 -26.08 10.09 55.49 0.56 -25.52 16 26 Si 0.92 21.76 29.55 -169.99 -5.02 16.74 16 27 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 28 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 29 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 30 C 0.14 3.36 5.63 -2.53 -0.01 3.35 16 31 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.08 0.96 8.14 -51.92 -0.42 0.54 16 33 H 0.03 0.45 8.11 -51.93 -0.42 0.03 16 34 H 0.07 1.48 7.84 -51.92 -0.41 1.07 16 35 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.10 1.20 8.14 -51.93 -0.42 0.77 16 38 H 0.41 4.23 8.46 -40.82 -0.35 3.88 16 39 H 0.13 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.11 0.97 7.67 -51.93 -0.40 0.57 16 42 H 0.11 0.60 8.14 -51.93 -0.42 0.17 16 43 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 45 H 0.11 2.94 5.87 -51.93 -0.30 2.64 16 46 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 LS Contribution 388.20 15.07 5.85 5.85 Total: -1.00 -33.97 388.20 -10.38 -44.36 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: -8.12 Total: 6.77 kcal Atomic # 6 Polarization: 14.87 SS G_CDS: -3.09 Total: 11.78 kcal Atomic # 7 Polarization: -70.46 SS G_CDS: 0.28 Total: -70.18 kcal Atomic # 8 Polarization: -15.04 SS G_CDS: -0.28 Total: -15.32 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.97 -10.38 -44.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070358680.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.127 kcal (2) G-P(sol) polarization free energy of solvation -33.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.355 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds