Wall clock time and date at job start Tue Mar 31 2020 18:29:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42901 * 113.99928 * 2 1 4 4 C 1.53004 * 109.46679 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.46695 * 179.97438 * 4 3 2 6 6 C 1.34814 * 126.59501 * 125.27219 * 5 4 3 7 7 C 1.36598 * 106.83782 * 180.14752 * 6 5 4 8 8 C 1.47528 * 125.76698 * 179.89707 * 7 6 5 9 9 O 1.21596 * 120.00139 * 359.71756 * 8 7 6 10 10 N 1.34777 * 119.99534 * 179.71407 * 8 7 6 11 11 C 1.47849 * 134.35829 * 179.97438 * 10 8 7 12 12 C 1.52565 * 85.65874 * 156.37564 * 11 10 8 13 13 C 1.47842 * 134.36506 * 0.02562 * 10 8 7 14 14 C 1.53916 * 115.92648 * 264.97768 * 12 11 10 15 15 C 1.55157 * 101.43416 * 264.39824 * 14 12 11 16 16 N 1.47540 * 105.00870 * 324.38046 * 15 14 12 17 17 C 1.36938 * 125.66104 * 203.91703 * 16 15 14 18 18 H 1.07992 * 120.00109 * 179.97438 * 17 16 15 19 19 C 1.38818 * 119.99452 * 359.97438 * 17 16 15 20 20 N 1.31613 * 120.00471 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99506 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.46987 * 90.00082 * 21 19 17 23 23 H 1.48503 * 109.46917 * 209.99654 * 21 19 17 24 24 H 1.48497 * 109.47417 * 329.99982 * 21 19 17 25 25 C 1.47365 * 108.68318 * 23.91258 * 16 15 14 26 26 N 1.34400 * 108.46046 * 359.63424 * 7 6 5 27 27 N 1.28765 * 109.51990 * 0.22774 * 26 7 6 28 28 H 1.09002 * 109.46959 * 300.00673 * 1 2 3 29 29 H 1.09004 * 109.46762 * 59.99996 * 1 2 3 30 30 H 1.08997 * 109.47092 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47286 * 60.00104 * 3 2 1 32 32 H 1.08996 * 109.46940 * 299.99485 * 3 2 1 33 33 H 1.08999 * 109.47093 * 60.00088 * 4 3 2 34 34 H 1.08996 * 109.47097 * 299.99490 * 4 3 2 35 35 H 1.08001 * 126.57772 * 0.02562 * 6 5 4 36 36 H 1.08999 * 113.84012 * 42.19531 * 11 10 8 37 37 H 1.08998 * 113.95973 * 270.57219 * 11 10 8 38 38 H 1.09002 * 113.84480 * 89.44154 * 13 10 8 39 39 H 1.09003 * 113.84456 * 317.80357 * 13 10 8 40 40 H 1.09000 * 111.01279 * 146.36280 * 14 12 11 41 41 H 1.09005 * 111.07982 * 22.46046 * 14 12 11 42 42 H 1.09003 * 110.33390 * 205.49754 * 15 14 12 43 43 H 1.09002 * 110.41826 * 83.30492 * 15 14 12 44 44 H 0.97002 * 120.00335 * 180.02562 * 20 19 17 45 45 H 1.09002 * 109.98231 * 117.31569 * 25 16 15 46 46 H 1.09004 * 109.98723 * 238.57759 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 4.1314 2.5229 0.0000 6 6 5.0290 3.0035 0.8837 7 6 5.3059 4.2873 0.5080 8 6 6.2383 5.2037 1.1915 9 8 6.8350 4.8346 2.1846 10 7 6.4287 6.4500 0.7151 11 6 7.2596 7.5999 1.1311 12 6 7.1605 8.0494 -0.3234 13 6 5.8893 7.2121 -0.4312 14 6 8.3246 7.6291 -1.2384 15 6 9.2247 8.8920 -1.1906 16 7 8.2858 10.0282 -1.1245 17 6 8.5562 11.3113 -1.5190 18 1 7.7976 12.0748 -1.4300 19 6 9.8054 11.6306 -2.0333 20 7 10.7297 10.7000 -2.1423 21 14 10.1744 13.3811 -2.5708 22 1 10.7266 14.1452 -1.4234 23 1 11.1667 13.3609 -3.6755 24 1 8.9236 14.0288 -3.0408 25 6 7.0086 9.5530 -0.5635 26 7 4.5897 4.5724 -0.5930 27 7 3.8815 3.5487 -0.9226 28 1 -0.3633 0.5140 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.6887 1.8464 0.8900 32 1 1.6887 1.8463 -0.8900 33 1 3.8575 0.6435 -0.8891 34 1 3.8567 0.6439 0.8909 35 1 5.4471 2.4755 1.7280 36 1 8.2684 7.3258 1.4398 37 1 6.7663 8.2711 1.8342 38 1 4.9775 7.7642 -0.2033 39 1 5.8198 6.6329 -1.3520 40 1 7.9747 7.4362 -2.2525 41 1 8.8465 6.7612 -0.8353 42 1 9.8347 8.9567 -2.0917 43 1 9.8596 8.8732 -0.3048 44 1 11.6027 10.9232 -2.5013 45 1 6.8033 10.0617 0.3785 46 1 6.1996 9.7375 -1.2703 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072711761.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:13 Heat of formation + Delta-G solvation = 70.519176 kcal Electronic energy + Delta-G solvation = -28318.663197 eV Core-core repulsion = 24247.560155 eV Total energy + Delta-G solvation = -4071.103042 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.30146 -41.67701 -39.45406 -39.05008 -37.23830 -35.96232 -34.05468 -32.30231 -31.49638 -30.81962 -29.94734 -27.70071 -27.29678 -27.23214 -25.52216 -25.10029 -23.82560 -22.80576 -22.16411 -20.67553 -19.72077 -18.77502 -18.61437 -17.73892 -17.53438 -17.34349 -16.98440 -16.84823 -16.56285 -16.45707 -15.90106 -15.81845 -15.57413 -15.46301 -14.84446 -14.62489 -14.22082 -14.06065 -13.73762 -13.60264 -13.46987 -13.30039 -13.22575 -12.86254 -12.81643 -12.74652 -12.49834 -12.38572 -12.14697 -11.99323 -11.90341 -11.75709 -11.53285 -11.42812 -11.28681 -11.02671 -10.79874 -10.69541 -10.43716 -9.70838 -8.83222 -7.72319 -5.15885 0.07503 0.58286 0.89195 1.50251 1.51814 1.60471 1.73667 2.19049 2.53924 2.66084 3.00943 3.30985 3.40530 3.47283 3.57765 3.69263 3.76505 3.78495 3.91645 4.08327 4.11208 4.18404 4.22738 4.29074 4.43416 4.47534 4.50780 4.59291 4.59951 4.65414 4.71949 4.73864 4.84275 4.88836 4.90932 4.96440 5.09991 5.21692 5.24256 5.33446 5.52538 5.66026 5.86258 5.98396 6.34846 6.59787 6.75790 7.05580 7.15480 7.83291 8.47756 9.29928 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.030309 B = 0.001964 C = 0.001913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.598340 B =14256.438486 C =14636.774851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.402 6.402 3 C 0.053 3.947 4 C 0.121 3.879 5 N -0.350 5.350 6 C 0.119 3.881 7 C -0.119 4.119 8 C 0.620 3.380 9 O -0.575 6.575 10 N -0.627 5.627 11 C 0.129 3.871 12 C -0.098 4.098 13 C 0.142 3.858 14 C -0.103 4.103 15 C 0.159 3.841 16 N -0.626 5.626 17 C -0.233 4.233 18 H 0.085 0.915 19 C -0.070 4.070 20 N -0.951 5.951 21 Si 0.979 3.021 22 H -0.289 1.289 23 H -0.296 1.296 24 H -0.268 1.268 25 C 0.150 3.850 26 N -0.215 5.215 27 N -0.085 5.085 28 H 0.051 0.949 29 H 0.048 0.952 30 H 0.104 0.896 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.119 0.881 34 H 0.147 0.853 35 H 0.240 0.760 36 H 0.073 0.927 37 H 0.105 0.895 38 H 0.107 0.893 39 H 0.092 0.908 40 H 0.070 0.930 41 H 0.067 0.933 42 H 0.071 0.929 43 H -0.014 1.014 44 H 0.245 0.755 45 H 0.036 0.964 46 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.281 -23.056 6.245 31.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.320 6.320 3 C -0.025 4.025 4 C 0.001 3.999 5 N -0.135 5.135 6 C -0.038 4.038 7 C -0.258 4.258 8 C 0.409 3.591 9 O -0.455 6.455 10 N -0.359 5.359 11 C 0.008 3.992 12 C -0.100 4.100 13 C 0.020 3.980 14 C -0.141 4.141 15 C 0.034 3.966 16 N -0.352 5.352 17 C -0.362 4.362 18 H 0.103 0.897 19 C -0.263 4.263 20 N -0.601 5.601 21 Si 0.808 3.192 22 H -0.216 1.216 23 H -0.223 1.223 24 H -0.193 1.193 25 C 0.024 3.976 26 N -0.088 5.088 27 N -0.065 5.065 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.123 0.877 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.137 0.863 34 H 0.165 0.835 35 H 0.256 0.744 36 H 0.091 0.909 37 H 0.123 0.877 38 H 0.125 0.875 39 H 0.110 0.890 40 H 0.088 0.912 41 H 0.086 0.914 42 H 0.089 0.911 43 H 0.004 0.996 44 H 0.055 0.945 45 H 0.053 0.947 46 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -20.584 -23.146 5.487 31.457 hybrid contribution 0.941 0.937 0.528 1.429 sum -19.643 -22.209 6.015 30.253 Atomic orbital electron populations 1.22982 0.78605 1.04349 1.00993 1.87754 1.21997 1.26576 1.95694 1.22551 0.92219 0.85672 1.02017 1.22040 0.92782 0.76323 1.08750 1.50470 1.29762 1.13996 1.19312 1.23832 0.90726 0.93563 0.95704 1.21321 1.08012 0.96460 1.00023 1.16614 0.80123 0.80249 0.82105 1.90776 1.51042 1.76503 1.27210 1.49891 1.44799 1.10522 1.30724 1.23119 0.95693 0.84225 0.96185 1.22368 0.96696 0.95341 0.95574 1.23105 0.96061 0.89729 0.89132 1.22467 0.95517 0.97569 0.98562 1.21698 0.91285 0.84244 0.99370 1.44871 1.10640 1.06001 1.73677 1.19484 0.97519 0.85836 1.33346 0.89733 1.25621 0.96294 1.01732 1.02602 1.70060 1.04748 1.32541 1.52761 0.85063 0.77619 0.79460 0.77095 1.21611 1.22287 1.19255 1.21150 0.88700 0.91068 0.96634 1.74690 1.04143 1.19624 1.10367 1.81945 1.20673 0.91158 1.12766 0.93059 0.93304 0.87724 0.92173 0.92305 0.86329 0.83499 0.74372 0.90876 0.87709 0.87470 0.88950 0.91173 0.91403 0.91148 0.99571 0.94517 0.94655 0.94007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 113.37 1.25 1.42 16 2 O -0.40 -4.19 10.70 -148.98 -1.59 -5.79 16 3 C 0.05 0.49 6.14 71.98 0.44 0.94 16 4 C 0.12 0.88 6.91 86.38 0.60 1.47 16 5 N -0.35 -5.20 3.69 -347.09 -1.28 -6.48 16 6 C 0.12 1.94 11.27 83.85 0.95 2.88 16 7 C -0.12 -2.93 6.95 40.82 0.28 -2.64 16 8 C 0.62 18.63 8.05 86.69 0.70 19.32 16 9 O -0.58 -19.84 17.59 -4.02 -0.07 -19.91 16 10 N -0.63 -18.55 3.62 -863.51 -3.12 -21.67 16 11 C 0.13 3.98 8.08 85.98 0.69 4.67 16 12 C -0.10 -3.25 0.98 -52.07 -0.05 -3.30 16 13 C 0.14 3.87 7.16 85.99 0.62 4.48 16 14 C -0.10 -3.91 6.42 31.64 0.20 -3.71 16 15 C 0.16 7.91 5.90 86.92 0.51 8.42 16 16 N -0.63 -31.76 3.41 -692.84 -2.36 -34.12 16 17 C -0.23 -12.91 10.28 84.03 0.86 -12.05 16 18 H 0.08 4.44 7.83 -2.91 -0.02 4.42 16 19 C -0.07 -3.99 5.49 84.86 0.47 -3.53 16 20 N -0.95 -57.17 10.09 21.65 0.22 -56.95 16 21 Si 0.98 45.80 29.55 68.60 2.03 47.82 16 22 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 23 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 24 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 25 C 0.15 5.82 6.75 86.22 0.58 6.40 16 26 N -0.21 -5.57 10.71 -49.99 -0.54 -6.10 16 27 N -0.09 -1.91 13.65 37.02 0.51 -1.41 16 28 H 0.05 0.26 8.14 -2.39 -0.02 0.24 16 29 H 0.05 0.29 8.14 -2.39 -0.02 0.27 16 30 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.15 0.18 8.08 -2.39 -0.02 0.16 16 35 H 0.24 2.06 8.06 -2.91 -0.02 2.04 16 36 H 0.07 2.43 8.12 -2.39 -0.02 2.41 16 37 H 0.10 2.86 8.00 -2.39 -0.02 2.84 16 38 H 0.11 2.51 8.14 -2.39 -0.02 2.49 16 39 H 0.09 2.55 7.48 -2.39 -0.02 2.53 16 40 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 41 H 0.07 2.46 8.06 -2.38 -0.02 2.44 16 42 H 0.07 4.02 5.89 -2.39 -0.01 4.00 16 43 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 44 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 45 H 0.04 1.32 7.86 -2.39 -0.02 1.30 16 46 H 0.04 1.55 8.09 -2.39 -0.02 1.53 16 Total: -1.00 -75.38 384.77 2.87 -72.51 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: 0.98 Total: 7.31 kcal Atomic # 6 Polarization: 16.68 SS G_CDS: 8.10 Total: 24.78 kcal Atomic # 7 Polarization: -120.15 SS G_CDS: -6.58 Total: -126.73 kcal Atomic # 8 Polarization: -24.03 SS G_CDS: -1.67 Total: -25.70 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.82 kcal Total: -75.38 2.87 -72.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072711761.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.033 kcal (2) G-P(sol) polarization free energy of solvation -75.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.514 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds