Wall clock time and date at job start Tue Mar 31 2020 18:29:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 113.99778 * 2 1 4 4 C 1.52999 * 109.46728 * 179.97438 * 3 2 1 5 5 N 1.46506 * 109.46684 * 179.97438 * 4 3 2 6 6 C 1.34817 * 126.59047 * 125.00139 * 5 4 3 7 7 C 1.36595 * 106.83867 * 179.97438 * 6 5 4 8 8 C 1.47518 * 125.77328 * 180.02562 * 7 6 5 9 9 O 1.21599 * 120.00122 * 359.97438 * 8 7 6 10 10 N 1.34775 * 120.00317 * 179.97438 * 8 7 6 11 11 C 1.47348 * 125.52844 * 359.69033 * 10 8 7 12 12 C 1.55152 * 104.78673 * 156.48748 * 11 10 8 13 13 C 1.54794 * 101.40271 * 37.52370 * 12 11 10 14 14 H 1.08994 * 112.64445 * 85.17336 * 13 12 11 15 15 C 1.53270 * 109.75197 * 212.12755 * 13 12 11 16 16 N 1.46584 * 108.15845 * 95.75936 * 15 13 12 17 17 C 1.36936 * 125.30581 * 177.89312 * 16 15 13 18 18 H 1.07999 * 119.99999 * 0.02562 * 17 16 15 19 19 C 1.38812 * 120.00108 * 180.02562 * 17 16 15 20 20 N 1.31620 * 120.00144 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00121 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47208 * 89.99408 * 21 19 17 23 23 H 1.48496 * 109.46933 * 209.99882 * 21 19 17 24 24 H 1.48505 * 109.46998 * 329.99745 * 21 19 17 25 25 C 1.46610 * 109.38804 * 357.89163 * 16 15 13 26 26 C 1.47212 * 125.53194 * 180.02562 * 10 8 7 27 27 H 1.08998 * 112.29267 * 56.20598 * 26 10 8 28 28 N 1.34410 * 108.45774 * 359.97438 * 7 6 5 29 29 N 1.28754 * 109.51960 * 359.75019 * 28 7 6 30 30 H 1.08999 * 109.46926 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47171 * 299.99768 * 1 2 3 32 32 H 1.08997 * 109.47442 * 59.99964 * 1 2 3 33 33 H 1.09000 * 109.47187 * 300.00233 * 3 2 1 34 34 H 1.09001 * 109.46558 * 60.00281 * 3 2 1 35 35 H 1.09000 * 109.47486 * 300.00062 * 4 3 2 36 36 H 1.09001 * 109.47362 * 60.00784 * 4 3 2 37 37 H 1.07999 * 126.58010 * 359.92834 * 6 5 4 38 38 H 1.08999 * 110.36119 * 275.43731 * 11 10 8 39 39 H 1.09004 * 110.35607 * 37.72916 * 11 10 8 40 40 H 1.09000 * 111.21145 * 279.44100 * 12 11 10 41 41 H 1.09002 * 110.95742 * 155.49834 * 12 11 10 42 42 H 1.08998 * 109.74087 * 215.44916 * 15 13 12 43 43 H 1.09005 * 109.72998 * 336.07677 * 15 13 12 44 44 H 0.96994 * 120.00150 * 180.02562 * 20 19 17 45 45 H 1.08997 * 109.91668 * 258.45096 * 25 16 15 46 46 H 1.08997 * 109.91339 * 137.17009 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 4.1312 2.5231 0.0000 6 6 5.0250 3.0053 0.8868 7 6 5.3065 4.2870 0.5076 8 6 6.2389 5.2034 1.1909 9 8 6.8350 4.8347 2.1846 10 7 6.4303 6.4493 0.7140 11 6 5.7797 7.0186 -0.4793 12 6 5.8285 8.5541 -0.2622 13 6 7.2154 8.7252 0.4036 14 1 8.0235 8.8023 -0.3237 15 6 7.1769 9.9010 1.3860 16 7 6.9181 9.3679 2.7267 17 6 6.8539 10.1111 3.8751 18 1 6.9995 11.1804 3.8351 19 6 6.6017 9.4899 5.0906 20 7 6.4237 8.1867 5.1393 21 14 6.5134 10.5038 6.6571 22 1 5.1151 10.9520 6.8785 23 1 6.9562 9.6762 7.8078 24 1 7.3989 11.6892 6.5300 25 6 6.7386 7.9151 2.6465 26 6 7.3283 7.4599 1.2965 27 1 8.3541 7.1013 1.3821 28 7 4.5911 4.5718 -0.5941 29 7 3.8868 3.5465 -0.9266 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.6885 1.8465 -0.8900 34 1 1.6885 1.8463 0.8900 35 1 3.8567 0.6439 0.8908 36 1 3.8574 0.6437 -0.8892 37 1 5.4384 2.4794 1.7346 38 1 6.3297 6.7429 -1.3790 39 1 4.7463 6.6784 -0.5464 40 1 5.0315 8.8838 0.4043 41 1 5.7836 9.0840 -1.2137 42 1 8.1346 10.4212 1.3753 43 1 6.3809 10.5903 1.1039 44 1 6.2471 7.7527 5.9886 45 1 5.6777 7.6690 2.6902 46 1 7.2690 7.4297 3.4657 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075783577.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:17 Heat of formation + Delta-G solvation = 69.563496 kcal Electronic energy + Delta-G solvation = -29184.837064 eV Core-core repulsion = 25113.692580 eV Total energy + Delta-G solvation = -4071.144483 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.29964 -39.83135 -38.54860 -37.63215 -35.23447 -34.76255 -32.22088 -31.23874 -30.58053 -30.15767 -28.45481 -26.98154 -26.62839 -24.58225 -24.33775 -23.64504 -22.14788 -21.77708 -20.43601 -19.71767 -18.84195 -17.81000 -16.99086 -16.87630 -16.65799 -16.20206 -15.94586 -15.51168 -15.27424 -15.14181 -14.55906 -14.45322 -14.09112 -13.93683 -13.52889 -13.27715 -12.80332 -12.75480 -12.61534 -12.42501 -12.07435 -12.03684 -11.93000 -11.83217 -11.49766 -11.19189 -11.08951 -10.97164 -10.74723 -10.56886 -10.30347 -10.28214 -10.00844 -9.95476 -9.72871 -9.65221 -9.60409 -9.32601 -8.53633 -8.08172 -6.75043 -5.56719 -2.98495 1.01521 1.69073 1.79676 3.20895 3.29629 3.45135 3.49505 3.52259 3.61036 4.04500 4.21018 4.29810 4.55619 4.58558 4.64732 4.79343 4.84367 4.88469 4.94136 5.00353 5.08442 5.11056 5.18538 5.29983 5.36066 5.56541 5.59753 5.72515 5.79770 5.90345 6.03056 6.12295 6.14664 6.18801 6.29677 6.47653 6.48626 6.63256 6.72791 6.76356 6.97393 7.61190 7.70529 7.83698 7.96181 8.05087 8.43555 8.57339 9.30763 9.91770 10.54428 11.47576 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.014493 B = 0.002730 C = 0.002460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.524597 B =10253.476815 C =11379.117552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.389 6.389 3 C 0.049 3.951 4 C 0.127 3.873 5 N -0.365 5.365 6 C 0.096 3.904 7 C -0.084 4.084 8 C 0.610 3.390 9 O -0.526 6.526 10 N -0.592 5.592 11 C 0.104 3.896 12 C -0.124 4.124 13 C -0.110 4.110 14 H 0.087 0.913 15 C 0.146 3.854 16 N -0.602 5.602 17 C -0.229 4.229 18 H 0.078 0.922 19 C -0.009 4.009 20 N -0.914 5.914 21 Si 0.912 3.088 22 H -0.290 1.290 23 H -0.291 1.291 24 H -0.281 1.281 25 C 0.166 3.834 26 C 0.115 3.885 27 H 0.084 0.916 28 N -0.199 5.199 29 N -0.073 5.073 30 H 0.091 0.909 31 H 0.045 0.955 32 H 0.046 0.954 33 H 0.069 0.931 34 H 0.060 0.940 35 H 0.115 0.885 36 H 0.107 0.893 37 H 0.207 0.793 38 H 0.063 0.937 39 H 0.089 0.911 40 H 0.081 0.919 41 H 0.077 0.923 42 H 0.023 0.977 43 H 0.025 0.975 44 H 0.252 0.748 45 H 0.020 0.980 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.841 -15.127 -14.466 22.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.308 6.308 3 C -0.028 4.028 4 C 0.006 3.994 5 N -0.152 5.152 6 C -0.060 4.060 7 C -0.223 4.223 8 C 0.395 3.605 9 O -0.401 6.401 10 N -0.324 5.324 11 C -0.019 4.019 12 C -0.162 4.162 13 C -0.129 4.129 14 H 0.106 0.894 15 C 0.019 3.981 16 N -0.329 5.329 17 C -0.358 4.358 18 H 0.096 0.904 19 C -0.205 4.205 20 N -0.562 5.562 21 Si 0.743 3.257 22 H -0.217 1.217 23 H -0.217 1.217 24 H -0.207 1.207 25 C 0.041 3.959 26 C 0.012 3.988 27 H 0.102 0.898 28 N -0.073 5.073 29 N -0.053 5.053 30 H 0.109 0.891 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.087 0.913 34 H 0.078 0.922 35 H 0.133 0.867 36 H 0.125 0.875 37 H 0.224 0.776 38 H 0.082 0.918 39 H 0.107 0.893 40 H 0.099 0.901 41 H 0.096 0.904 42 H 0.041 0.959 43 H 0.043 0.957 44 H 0.063 0.937 45 H 0.038 0.962 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -8.258 -15.253 -14.917 22.877 hybrid contribution 0.040 0.261 1.633 1.655 sum -8.218 -14.991 -13.284 21.650 Atomic orbital electron populations 1.22804 0.79669 1.03230 1.00585 1.87772 1.20794 1.26544 1.95646 1.22638 0.91968 0.85716 1.02519 1.21650 0.93127 0.78175 1.06491 1.50231 1.30909 1.13560 1.20450 1.23397 0.91983 0.94991 0.95615 1.21585 1.06664 0.95381 0.98682 1.16296 0.80994 0.80126 0.83060 1.90863 1.49112 1.75429 1.24734 1.48252 1.43848 1.11778 1.28536 1.22505 0.98974 0.93215 0.87190 1.22870 0.97775 0.94655 1.00903 1.22877 0.97173 0.95680 0.97174 0.89440 1.20980 0.97857 0.93444 0.85796 1.44168 1.84147 1.03160 1.01382 1.19024 1.42162 0.90719 0.83849 0.90384 1.24846 1.01958 0.95957 0.97753 1.69930 1.54600 1.07298 1.24324 0.86113 0.77595 0.78833 0.83164 1.21728 1.21689 1.20688 1.21666 0.98010 0.84128 0.92114 1.23020 0.93295 0.85777 0.96717 0.89783 1.74714 1.03930 1.18135 1.10522 1.81946 1.20887 0.90672 1.11749 0.89055 0.93615 0.93578 0.91251 0.92170 0.86728 0.87486 0.77626 0.91835 0.89256 0.90074 0.90443 0.95878 0.95671 0.93715 0.96209 0.88559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.39 -2.93 10.70 -35.23 -0.38 -3.31 16 3 C 0.05 0.35 6.15 37.16 0.23 0.58 16 4 C 0.13 0.84 6.91 -4.04 -0.03 0.81 16 5 N -0.36 -3.78 3.69 -61.06 -0.23 -4.01 16 6 C 0.10 1.14 11.27 -16.83 -0.19 0.95 16 7 C -0.08 -1.31 6.83 -83.55 -0.57 -1.88 16 8 C 0.61 11.66 7.67 -12.48 -0.10 11.57 16 9 O -0.53 -11.68 16.98 5.28 0.09 -11.59 16 10 N -0.59 -11.05 2.85 -162.73 -0.46 -11.52 16 11 C 0.10 1.60 6.10 -2.44 -0.01 1.59 16 12 C -0.12 -1.90 6.25 -24.65 -0.15 -2.06 16 13 C -0.11 -1.90 3.90 -88.33 -0.34 -2.25 16 14 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 15 C 0.15 3.04 6.65 -3.86 -0.03 3.01 16 16 N -0.60 -15.83 3.37 -172.18 -0.58 -16.41 16 17 C -0.23 -6.54 10.25 -15.06 -0.15 -6.69 16 18 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 19 C -0.01 -0.26 5.48 -17.43 -0.10 -0.35 16 20 N -0.91 -27.96 10.17 55.49 0.56 -27.40 16 21 Si 0.91 22.64 29.55 -169.99 -5.02 17.62 16 22 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 23 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 24 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 25 C 0.17 4.31 4.80 -3.36 -0.02 4.29 16 26 C 0.12 2.37 3.88 -65.72 -0.25 2.11 16 27 H 0.08 1.74 8.14 -51.93 -0.42 1.32 16 28 N -0.20 -2.99 9.39 32.85 0.31 -2.68 16 29 N -0.07 -0.96 13.65 60.35 0.82 -0.13 16 30 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.05 0.21 8.14 -51.93 -0.42 -0.21 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.11 0.51 8.08 -51.93 -0.42 0.09 16 36 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.21 1.86 8.06 -52.49 -0.42 1.43 16 38 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.09 1.38 6.15 -51.93 -0.32 1.06 16 40 H 0.08 1.43 7.88 -51.93 -0.41 1.02 16 41 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 42 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.03 0.52 7.74 -51.93 -0.40 0.12 16 44 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 45 H 0.02 0.57 7.94 -51.93 -0.41 0.16 16 46 H 0.10 2.89 6.22 -51.93 -0.32 2.57 16 LS Contribution 376.60 15.07 5.68 5.68 Total: -1.00 -35.69 376.60 -6.72 -42.40 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: -6.90 Total: -1.63 kcal Atomic # 6 Polarization: 13.57 SS G_CDS: -0.60 Total: 12.97 kcal Atomic # 7 Polarization: -62.57 SS G_CDS: 0.43 Total: -62.14 kcal Atomic # 8 Polarization: -14.61 SS G_CDS: -0.29 Total: -14.90 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.69 -6.72 -42.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075783577.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.968 kcal (2) G-P(sol) polarization free energy of solvation -35.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds