Wall clock time and date at job start Tue Mar 31 2020 18:29:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 113.99778 * 2 1 4 4 C 1.52999 * 109.46728 * 179.97438 * 3 2 1 5 5 N 1.46506 * 109.46684 * 179.97438 * 4 3 2 6 6 C 1.34817 * 126.59047 * 125.00139 * 5 4 3 7 7 C 1.36595 * 106.83867 * 179.97438 * 6 5 4 8 8 C 1.47518 * 125.77328 * 180.02562 * 7 6 5 9 9 O 1.21599 * 120.00122 * 359.97438 * 8 7 6 10 10 N 1.34775 * 120.00317 * 179.97438 * 8 7 6 11 11 C 1.47348 * 125.52844 * 359.69033 * 10 8 7 12 12 C 1.55152 * 104.78673 * 156.48748 * 11 10 8 13 13 C 1.54794 * 101.40271 * 37.52370 * 12 11 10 14 14 H 1.08994 * 112.64445 * 85.17336 * 13 12 11 15 15 C 1.53270 * 109.75197 * 212.12755 * 13 12 11 16 16 N 1.46584 * 108.15845 * 95.75936 * 15 13 12 17 17 C 1.36936 * 125.30581 * 177.89312 * 16 15 13 18 18 H 1.07999 * 119.99999 * 0.02562 * 17 16 15 19 19 C 1.38812 * 120.00108 * 180.02562 * 17 16 15 20 20 N 1.31620 * 120.00144 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00121 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47208 * 89.99408 * 21 19 17 23 23 H 1.48496 * 109.46933 * 209.99882 * 21 19 17 24 24 H 1.48505 * 109.46998 * 329.99745 * 21 19 17 25 25 C 1.46610 * 109.38804 * 357.89163 * 16 15 13 26 26 C 1.47212 * 125.53194 * 180.02562 * 10 8 7 27 27 H 1.08998 * 112.29267 * 56.20598 * 26 10 8 28 28 N 1.34410 * 108.45774 * 359.97438 * 7 6 5 29 29 N 1.28754 * 109.51960 * 359.75019 * 28 7 6 30 30 H 1.08999 * 109.46926 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47171 * 299.99768 * 1 2 3 32 32 H 1.08997 * 109.47442 * 59.99964 * 1 2 3 33 33 H 1.09000 * 109.47187 * 300.00233 * 3 2 1 34 34 H 1.09001 * 109.46558 * 60.00281 * 3 2 1 35 35 H 1.09000 * 109.47486 * 300.00062 * 4 3 2 36 36 H 1.09001 * 109.47362 * 60.00784 * 4 3 2 37 37 H 1.07999 * 126.58010 * 359.92834 * 6 5 4 38 38 H 1.08999 * 110.36119 * 275.43731 * 11 10 8 39 39 H 1.09004 * 110.35607 * 37.72916 * 11 10 8 40 40 H 1.09000 * 111.21145 * 279.44100 * 12 11 10 41 41 H 1.09002 * 110.95742 * 155.49834 * 12 11 10 42 42 H 1.08998 * 109.74087 * 215.44916 * 15 13 12 43 43 H 1.09005 * 109.72998 * 336.07677 * 15 13 12 44 44 H 0.96994 * 120.00150 * 180.02562 * 20 19 17 45 45 H 1.08997 * 109.91668 * 258.45096 * 25 16 15 46 46 H 1.08997 * 109.91339 * 137.17009 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 4.1312 2.5231 0.0000 6 6 5.0250 3.0053 0.8868 7 6 5.3065 4.2870 0.5076 8 6 6.2389 5.2034 1.1909 9 8 6.8350 4.8347 2.1846 10 7 6.4303 6.4493 0.7140 11 6 5.7797 7.0186 -0.4793 12 6 5.8285 8.5541 -0.2622 13 6 7.2154 8.7252 0.4036 14 1 8.0235 8.8023 -0.3237 15 6 7.1769 9.9010 1.3860 16 7 6.9181 9.3679 2.7267 17 6 6.8539 10.1111 3.8751 18 1 6.9995 11.1804 3.8351 19 6 6.6017 9.4899 5.0906 20 7 6.4237 8.1867 5.1393 21 14 6.5134 10.5038 6.6571 22 1 5.1151 10.9520 6.8785 23 1 6.9562 9.6762 7.8078 24 1 7.3989 11.6892 6.5300 25 6 6.7386 7.9151 2.6465 26 6 7.3283 7.4599 1.2965 27 1 8.3541 7.1013 1.3821 28 7 4.5911 4.5718 -0.5941 29 7 3.8868 3.5465 -0.9266 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.6885 1.8465 -0.8900 34 1 1.6885 1.8463 0.8900 35 1 3.8567 0.6439 0.8908 36 1 3.8574 0.6437 -0.8892 37 1 5.4384 2.4794 1.7346 38 1 6.3297 6.7429 -1.3790 39 1 4.7463 6.6784 -0.5464 40 1 5.0315 8.8838 0.4043 41 1 5.7836 9.0840 -1.2137 42 1 8.1346 10.4212 1.3753 43 1 6.3809 10.5903 1.1039 44 1 6.2471 7.7527 5.9886 45 1 5.6777 7.6690 2.6902 46 1 7.2690 7.4297 3.4657 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001075783577.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:17 Heat of formation + Delta-G solvation = 43.396577 kcal Electronic energy + Delta-G solvation = -29185.971746 eV Core-core repulsion = 25113.692580 eV Total energy + Delta-G solvation = -4072.279166 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.32540 -41.34281 -39.26925 -39.03621 -36.67882 -35.94150 -34.07661 -32.32960 -32.15851 -31.13650 -30.11889 -28.36794 -27.42111 -26.48562 -25.16809 -24.94878 -23.32002 -22.73447 -22.25129 -21.11575 -20.29430 -18.97171 -18.74862 -17.78883 -17.58863 -17.20380 -17.10591 -16.81114 -16.39308 -16.27926 -16.01951 -15.56523 -15.49854 -15.10767 -15.00899 -14.66098 -14.29974 -14.16232 -13.76611 -13.54812 -13.48979 -13.26695 -13.17740 -12.99268 -12.78029 -12.73557 -12.56911 -12.42550 -12.20189 -12.13113 -11.83965 -11.64038 -11.47075 -11.38695 -11.34938 -11.17301 -10.80899 -10.71813 -10.42356 -9.60292 -8.88971 -7.76803 -5.21961 0.05454 0.59433 0.87975 1.44291 1.47508 1.56515 1.91916 2.23729 2.49974 2.64621 3.06455 3.33481 3.39574 3.50579 3.65484 3.72341 3.76615 3.86148 3.92783 4.04590 4.06781 4.16993 4.33658 4.37897 4.43088 4.44220 4.48999 4.51971 4.58525 4.62299 4.73256 4.82844 4.83127 4.90397 5.00391 5.12913 5.21217 5.27846 5.32054 5.48894 5.50856 5.59842 5.82872 5.97074 6.26905 6.52786 6.79058 7.08278 7.13921 7.80285 8.41358 9.25670 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.014493 B = 0.002730 C = 0.002460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.524597 B =10253.476815 C =11379.117552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.400 6.400 3 C 0.053 3.947 4 C 0.121 3.879 5 N -0.348 5.348 6 C 0.116 3.884 7 C -0.115 4.115 8 C 0.603 3.397 9 O -0.572 6.572 10 N -0.597 5.597 11 C 0.107 3.893 12 C -0.115 4.115 13 C -0.093 4.093 14 H 0.131 0.869 15 C 0.138 3.862 16 N -0.624 5.624 17 C -0.241 4.241 18 H 0.089 0.911 19 C -0.073 4.073 20 N -0.949 5.949 21 Si 0.983 3.017 22 H -0.287 1.287 23 H -0.297 1.297 24 H -0.263 1.263 25 C 0.187 3.813 26 C 0.119 3.881 27 H 0.079 0.921 28 N -0.210 5.210 29 N -0.079 5.079 30 H 0.106 0.894 31 H 0.047 0.953 32 H 0.050 0.950 33 H 0.063 0.937 34 H 0.054 0.946 35 H 0.143 0.857 36 H 0.125 0.875 37 H 0.234 0.766 38 H 0.092 0.908 39 H 0.088 0.912 40 H 0.051 0.949 41 H 0.123 0.877 42 H 0.035 0.965 43 H 0.035 0.965 44 H 0.243 0.757 45 H -0.024 1.024 46 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.120 -15.279 -16.651 24.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.319 6.319 3 C -0.025 4.025 4 C 0.002 3.998 5 N -0.134 5.134 6 C -0.041 4.041 7 C -0.253 4.253 8 C 0.391 3.609 9 O -0.451 6.451 10 N -0.328 5.328 11 C -0.014 4.014 12 C -0.153 4.153 13 C -0.112 4.112 14 H 0.149 0.851 15 C 0.013 3.987 16 N -0.351 5.351 17 C -0.370 4.370 18 H 0.107 0.893 19 C -0.265 4.265 20 N -0.598 5.598 21 Si 0.811 3.189 22 H -0.214 1.214 23 H -0.223 1.223 24 H -0.188 1.188 25 C 0.060 3.940 26 C 0.015 3.985 27 H 0.097 0.903 28 N -0.084 5.084 29 N -0.060 5.060 30 H 0.124 0.876 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.161 0.839 36 H 0.143 0.857 37 H 0.250 0.750 38 H 0.110 0.890 39 H 0.106 0.894 40 H 0.069 0.931 41 H 0.141 0.859 42 H 0.053 0.947 43 H 0.053 0.947 44 H 0.053 0.947 45 H -0.006 1.006 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -8.565 -15.384 -17.181 24.601 hybrid contribution 0.041 0.229 2.287 2.299 sum -8.524 -15.155 -14.894 22.895 Atomic orbital electron populations 1.22984 0.78625 1.04391 1.00950 1.87749 1.21983 1.26450 1.95687 1.22556 0.92302 0.85718 1.01949 1.22049 0.92688 0.76266 1.08832 1.50416 1.29866 1.14131 1.19009 1.23741 0.90975 0.93797 0.95612 1.21220 1.07849 0.96260 1.00020 1.16829 0.80915 0.80575 0.82610 1.90824 1.51038 1.76463 1.26729 1.48369 1.43681 1.11476 1.29318 1.22679 0.99120 0.92948 0.86670 1.22871 0.95304 0.94960 1.02151 1.22929 0.99965 0.91730 0.96550 0.85074 1.21247 0.98423 0.95048 0.83981 1.44485 1.83980 1.03464 1.03155 1.19497 1.41014 0.91496 0.84965 0.89338 1.25786 1.02408 0.97046 1.01276 1.70254 1.56110 1.09163 1.24298 0.85015 0.77740 0.77600 0.78592 1.21369 1.22327 1.18768 1.21165 0.94844 0.84141 0.93817 1.22734 0.92963 0.87976 0.94876 0.90304 1.74663 1.04200 1.19047 1.10510 1.81862 1.20660 0.91008 1.12431 0.87571 0.93408 0.93089 0.91908 0.92761 0.83915 0.85691 0.74997 0.88993 0.89398 0.93051 0.85852 0.94741 0.94666 0.94746 1.00589 0.93726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 113.37 1.25 1.49 16 2 O -0.40 -5.30 10.70 -148.98 -1.59 -6.89 16 3 C 0.05 0.67 6.15 71.98 0.44 1.11 16 4 C 0.12 1.29 6.91 86.38 0.60 1.88 16 5 N -0.35 -6.57 3.69 -347.08 -1.28 -7.85 16 6 C 0.12 2.61 11.27 83.85 0.95 3.55 16 7 C -0.11 -3.54 6.83 40.81 0.28 -3.27 16 8 C 0.60 23.84 7.67 86.69 0.66 24.50 16 9 O -0.57 -26.83 16.98 -4.03 -0.07 -26.90 16 10 N -0.60 -22.56 2.85 -787.02 -2.24 -24.81 16 11 C 0.11 3.12 6.10 86.96 0.53 3.65 16 12 C -0.12 -3.25 6.25 31.94 0.20 -3.05 16 13 C -0.09 -3.02 3.90 -9.31 -0.04 -3.06 16 14 H 0.13 3.24 8.14 -2.39 -0.02 3.22 16 15 C 0.14 5.60 6.65 86.45 0.58 6.17 16 16 N -0.62 -33.68 3.37 -698.67 -2.36 -36.04 16 17 C -0.24 -14.02 10.25 84.03 0.86 -13.16 16 18 H 0.09 4.83 7.83 -2.91 -0.02 4.81 16 19 C -0.07 -4.36 5.48 84.86 0.47 -3.89 16 20 N -0.95 -61.38 10.17 21.65 0.22 -61.16 16 21 Si 0.98 47.76 29.55 68.60 2.03 49.78 16 22 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 23 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 24 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 25 C 0.19 10.21 4.80 86.76 0.42 10.63 16 26 C 0.12 4.96 3.88 46.04 0.18 5.14 16 27 H 0.08 3.35 8.14 -2.39 -0.02 3.33 16 28 N -0.21 -6.13 9.39 -49.99 -0.47 -6.60 16 29 N -0.08 -1.98 13.65 37.02 0.51 -1.48 16 30 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 33 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.14 0.79 8.08 -2.39 -0.02 0.77 16 36 H 0.13 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.23 3.82 8.06 -2.91 -0.02 3.79 16 38 H 0.09 2.20 8.14 -2.39 -0.02 2.19 16 39 H 0.09 2.63 6.15 -2.38 -0.01 2.61 16 40 H 0.05 1.77 7.88 -2.39 -0.02 1.75 16 41 H 0.12 2.41 8.14 -2.39 -0.02 2.39 16 42 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 43 H 0.04 1.38 7.74 -2.38 -0.02 1.36 16 44 H 0.24 15.38 8.31 -92.71 -0.77 14.61 16 45 H -0.02 -1.48 7.94 -2.39 -0.02 -1.49 16 46 H 0.04 2.89 6.22 -2.39 -0.01 2.87 16 Total: -1.00 -83.86 376.60 3.09 -80.76 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: 0.98 Total: 9.46 kcal Atomic # 6 Polarization: 24.35 SS G_CDS: 7.37 Total: 31.71 kcal Atomic # 7 Polarization: -132.30 SS G_CDS: -5.62 Total: -137.93 kcal Atomic # 8 Polarization: -32.13 SS G_CDS: -1.66 Total: -33.79 kcal Atomic # 14 Polarization: 47.76 SS G_CDS: 2.03 Total: 49.78 kcal Total: -83.86 3.09 -80.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075783577.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.160 kcal (2) G-P(sol) polarization free energy of solvation -83.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds