Wall clock time and date at job start Tue Mar 31 2020 18:31:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42904 * 113.99859 * 2 1 4 4 H 1.09000 * 110.64531 * 26.85093 * 3 2 1 5 5 C 1.54330 * 110.86557 * 263.60479 * 3 2 1 6 6 N 1.47026 * 107.26845 * 219.37155 * 5 3 2 7 7 C 1.36931 * 125.64635 * 178.90545 * 6 5 3 8 8 H 1.08005 * 120.00111 * 174.87866 * 7 6 5 9 9 C 1.38808 * 120.00171 * 354.87324 * 7 6 5 10 10 N 1.31619 * 119.99832 * 7.06985 * 9 7 6 11 11 Si 1.86805 * 120.00074 * 187.06514 * 9 7 6 12 12 H 1.48498 * 109.46916 * 94.99093 * 11 9 7 13 13 H 1.48499 * 109.47073 * 214.98687 * 11 9 7 14 14 H 1.48495 * 109.47088 * 334.98888 * 11 9 7 15 15 C 1.47468 * 108.72374 * 358.97555 * 6 5 3 16 16 C 1.54916 * 104.81001 * 24.06900 * 15 6 5 17 17 H 1.08999 * 111.00045 * 81.13778 * 16 15 6 18 18 N 1.46496 * 111.00559 * 204.94797 * 16 15 6 19 19 C 1.34779 * 120.00010 * 270.42129 * 18 16 15 20 20 O 1.21279 * 119.99916 * 0.02562 * 19 18 16 21 21 C 1.50700 * 119.99808 * 179.97438 * 19 18 16 22 22 H 1.09004 * 109.69079 * 59.45921 * 21 19 18 23 23 C 1.53444 * 109.69159 * 179.97438 * 21 19 18 24 24 C 1.53105 * 109.54969 * 169.43265 * 23 21 19 25 25 C 1.53423 * 109.58003 * 289.93700 * 24 23 21 26 26 C 1.50600 * 108.33301 * 49.81720 * 25 24 23 27 27 N 1.32914 * 129.15917 * 163.40111 * 26 25 24 28 28 N 1.29015 * 108.63412 * 180.18387 * 27 26 25 29 29 N 1.29109 * 110.25780 * 359.97438 * 28 27 26 30 30 H 0.97000 * 126.00162 * 179.97438 * 29 28 27 31 31 C 1.34396 * 107.98881 * 359.93830 * 29 28 27 32 32 H 1.08997 * 109.47048 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47729 * 300.00804 * 1 2 3 34 34 H 1.09004 * 109.47026 * 60.01077 * 1 2 3 35 35 H 1.09000 * 109.88364 * 338.78631 * 5 3 2 36 36 H 1.09000 * 109.88034 * 99.80389 * 5 3 2 37 37 H 0.97007 * 119.99441 * 179.97438 * 10 9 7 38 38 H 1.08999 * 110.35122 * 265.25154 * 15 6 5 39 39 H 1.08994 * 110.40639 * 142.91540 * 15 6 5 40 40 H 0.96999 * 119.99791 * 90.41417 * 18 16 15 41 41 H 1.08995 * 109.45193 * 49.40941 * 23 21 19 42 42 H 1.08992 * 109.44387 * 289.44711 * 23 21 19 43 43 H 1.09002 * 109.45291 * 169.90951 * 24 23 21 44 44 H 1.09002 * 109.45941 * 49.96981 * 24 23 21 45 45 H 1.09002 * 109.69292 * 290.10910 * 25 24 23 46 46 H 1.09008 * 109.72277 * 169.54828 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3351 2.0267 0.4607 5 6 2.3805 1.7423 -1.4331 6 7 3.6669 2.4499 -1.3550 7 6 4.3524 2.9789 -2.4158 8 1 5.2509 3.5536 -2.2458 9 6 3.8925 2.7766 -3.7098 10 7 2.7276 2.1981 -3.9113 11 14 4.9269 3.3256 -5.1652 12 1 5.7396 2.1829 -5.6540 13 1 4.0363 3.8012 -6.2542 14 1 5.8271 4.4291 -4.7445 15 6 4.0980 2.4943 0.0546 16 6 3.3815 1.2959 0.7257 17 1 3.9168 0.3653 0.5372 18 7 3.2162 1.5212 2.1637 19 6 4.1768 1.1260 3.0226 20 8 5.1782 0.5842 2.6048 21 6 4.0069 1.3584 4.5018 22 1 3.1084 0.8507 4.8526 23 6 5.2313 0.8197 5.2538 24 6 5.1833 1.2859 6.7113 25 6 5.4414 2.7969 6.7766 26 6 4.5352 3.4756 5.7835 27 7 4.1948 4.7575 5.6975 28 7 3.3924 4.9048 4.6980 29 7 3.1881 3.7697 4.1177 30 1 2.6233 3.6184 3.3438 31 6 3.8964 2.8347 4.7739 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3634 0.5139 0.8898 34 1 -0.3633 0.5137 -0.8901 35 1 2.4777 0.8662 -2.0743 36 1 1.6124 2.4073 -1.8280 37 1 2.4061 2.0570 -4.8156 38 1 3.7856 3.4305 0.5172 39 1 5.1794 2.3777 0.1251 40 1 2.4154 1.9550 2.4978 41 1 6.1401 1.1938 4.7825 42 1 5.2270 -0.2697 5.2207 43 1 5.9476 0.7621 7.2853 44 1 4.2012 1.0671 7.1304 45 1 6.4818 3.0030 6.5250 46 1 5.2267 3.1637 7.7804 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082072746.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:32 Heat of formation + Delta-G solvation = 41.351966 kcal Electronic energy + Delta-G solvation = -30061.807701 eV Core-core repulsion = 25989.439874 eV Total energy + Delta-G solvation = -4072.367827 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.76403 -40.17900 -38.49730 -37.00500 -36.02392 -34.59944 -33.89378 -31.93213 -30.83341 -30.37776 -28.90183 -27.36718 -26.24488 -25.15799 -24.18964 -23.39685 -22.86571 -21.26762 -20.69660 -20.27307 -19.82567 -18.52056 -17.56153 -17.04139 -16.66905 -16.33342 -15.72405 -15.69405 -15.00517 -14.77827 -14.60938 -14.33424 -14.22956 -14.04584 -13.92977 -13.76034 -13.33387 -12.91423 -12.55783 -12.39474 -12.04757 -11.87418 -11.72860 -11.66000 -11.57135 -11.36027 -11.35409 -11.12657 -10.94718 -10.88533 -10.85074 -10.61374 -10.25632 -10.12946 -10.05619 -9.89400 -9.34531 -9.12894 -8.96865 -8.67736 -6.99264 -5.83139 -3.17421 1.23012 2.21573 2.31611 2.52868 2.92670 3.36666 3.42377 3.43666 3.92704 3.97882 4.06759 4.30261 4.40275 4.46113 4.56241 4.84246 4.88887 4.96737 4.98021 5.10202 5.18770 5.27052 5.36996 5.43798 5.49040 5.55331 5.56505 5.61961 5.68487 5.70997 5.73475 5.78653 5.87254 5.95141 5.96701 6.02169 6.26925 6.47083 6.49816 6.61686 7.10327 7.28006 7.36946 7.61850 7.74158 8.01162 8.11268 8.19809 9.08335 9.68456 10.30492 11.28650 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.014122 B = 0.003271 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1982.210145 B = 8559.322679 C = 9272.564589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.377 6.377 3 C 0.056 3.944 4 H 0.061 0.939 5 C 0.164 3.836 6 N -0.598 5.598 7 C -0.234 4.234 8 H 0.081 0.919 9 C -0.003 4.003 10 N -0.919 5.919 11 Si 0.913 3.087 12 H -0.287 1.287 13 H -0.290 1.290 14 H -0.280 1.280 15 C 0.131 3.869 16 C 0.131 3.869 17 H 0.110 0.890 18 N -0.721 5.721 19 C 0.516 3.484 20 O -0.513 6.513 21 C -0.031 4.031 22 H 0.119 0.881 23 C -0.099 4.099 24 C -0.119 4.119 25 C -0.036 4.036 26 C -0.004 4.004 27 N -0.258 5.258 28 N -0.077 5.077 29 N -0.378 5.378 30 H 0.445 0.555 31 C -0.012 4.012 32 H 0.081 0.919 33 H 0.032 0.968 34 H 0.046 0.954 35 H 0.065 0.935 36 H 0.048 0.952 37 H 0.254 0.746 38 H 0.018 0.982 39 H 0.052 0.948 40 H 0.385 0.615 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.082 0.918 44 H 0.069 0.931 45 H 0.087 0.913 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.003 -4.051 20.976 21.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.295 6.295 3 C -0.003 4.003 4 H 0.079 0.921 5 C 0.038 3.962 6 N -0.326 5.326 7 C -0.362 4.362 8 H 0.099 0.901 9 C -0.200 4.200 10 N -0.566 5.566 11 Si 0.743 3.257 12 H -0.214 1.214 13 H -0.217 1.217 14 H -0.205 1.205 15 C 0.004 3.996 16 C 0.026 3.974 17 H 0.128 0.872 18 N -0.373 5.373 19 C 0.300 3.700 20 O -0.387 6.387 21 C -0.055 4.055 22 H 0.136 0.864 23 C -0.137 4.137 24 C -0.157 4.157 25 C -0.075 4.075 26 C -0.144 4.144 27 N -0.124 5.124 28 N -0.056 5.056 29 N -0.098 5.098 30 H 0.291 0.709 31 C -0.148 4.148 32 H 0.099 0.901 33 H 0.051 0.949 34 H 0.065 0.935 35 H 0.084 0.916 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.036 0.964 39 H 0.070 0.930 40 H 0.218 0.782 41 H 0.103 0.897 42 H 0.104 0.896 43 H 0.101 0.899 44 H 0.088 0.912 45 H 0.105 0.895 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -2.440 -3.030 20.512 20.878 hybrid contribution -0.573 -0.374 -1.395 1.554 sum -3.013 -3.404 19.117 19.650 Atomic orbital electron populations 1.22726 0.81597 1.02222 0.99770 1.87919 1.19170 1.27350 1.95036 1.23843 0.92674 0.84174 0.99649 0.92107 1.21582 0.88232 0.97435 0.88903 1.44239 1.21156 1.66503 1.00676 1.19068 1.05934 1.27143 0.84005 0.90099 1.24837 0.97258 1.00497 0.97374 1.69941 1.18335 1.48132 1.20186 0.86079 0.79310 0.78081 0.82195 1.21397 1.21677 1.20515 1.21813 0.97955 0.93360 0.86501 1.22522 0.96747 1.01436 0.76697 0.87161 1.46131 1.21380 1.61801 1.07960 1.20333 0.83461 0.78701 0.87522 1.90760 1.28084 1.41219 1.78669 1.20077 1.03386 0.88406 0.93603 0.86377 1.21490 0.96286 1.01667 0.94247 1.21676 1.03023 0.94604 0.96372 1.20038 0.97419 0.93567 0.96492 1.21719 1.02904 0.90337 0.99458 1.74863 1.09379 1.16666 1.11473 1.78627 1.15960 1.05546 1.05461 1.44851 1.33786 1.06258 1.24949 0.70855 1.21450 1.01497 0.93770 0.98094 0.90081 0.94896 0.93523 0.91648 0.93395 0.93557 0.96427 0.92979 0.78172 0.89733 0.89593 0.89897 0.91221 0.89508 0.89494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.85 101.05 1.10 1.53 16 2 O -0.38 -6.39 10.44 -35.23 -0.37 -6.75 16 3 C 0.06 0.97 3.08 -24.90 -0.08 0.89 16 4 H 0.06 0.90 7.68 -51.93 -0.40 0.50 16 5 C 0.16 3.81 5.16 -3.06 -0.02 3.79 16 6 N -0.60 -14.90 3.40 -170.03 -0.58 -15.48 16 7 C -0.23 -6.45 10.26 -15.06 -0.15 -6.60 16 8 H 0.08 2.18 7.84 -52.48 -0.41 1.77 16 9 C 0.00 -0.08 5.48 -17.43 -0.10 -0.18 16 10 N -0.92 -26.34 10.36 55.49 0.57 -25.77 16 11 Si 0.91 21.94 29.56 -169.99 -5.02 16.92 16 12 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 13 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 14 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 15 C 0.13 2.68 6.93 -2.50 -0.02 2.66 16 16 C 0.13 2.25 3.09 -65.78 -0.20 2.04 16 17 H 0.11 2.19 7.63 -51.93 -0.40 1.80 16 18 N -0.72 -9.05 4.77 -51.73 -0.25 -9.30 16 19 C 0.52 6.66 7.13 -10.98 -0.08 6.58 16 20 O -0.51 -8.73 15.52 5.56 0.09 -8.64 16 21 C -0.03 -0.28 2.90 -92.78 -0.27 -0.55 16 22 H 0.12 0.75 8.14 -51.93 -0.42 0.32 16 23 C -0.10 -0.81 4.67 -26.45 -0.12 -0.93 16 24 C -0.12 -0.70 5.90 -26.46 -0.16 -0.86 16 25 C -0.04 -0.28 6.30 -27.71 -0.17 -0.45 16 26 C 0.00 -0.05 7.11 -83.12 -0.59 -0.64 16 27 N -0.26 -3.57 12.40 33.16 0.41 -3.15 16 28 N -0.08 -1.05 13.40 60.35 0.81 -0.24 16 29 N -0.38 -4.11 6.77 33.39 0.23 -3.88 16 30 H 0.44 3.87 6.90 -190.07 -1.31 2.55 16 31 C -0.01 -0.13 6.38 -82.50 -0.53 -0.66 16 32 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.03 0.34 8.11 -51.93 -0.42 -0.08 16 34 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.07 1.74 7.22 -51.93 -0.37 1.37 16 36 H 0.05 1.21 7.61 -51.93 -0.40 0.81 16 37 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 38 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.38 3.57 6.71 -40.82 -0.27 3.30 16 41 H 0.08 0.85 7.73 -51.93 -0.40 0.45 16 42 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 44 H 0.07 0.36 8.12 -51.93 -0.42 -0.06 16 45 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 46 H 0.09 0.57 8.14 -51.92 -0.42 0.15 16 LS Contribution 370.31 15.07 5.58 5.58 Total: -1.00 -34.42 370.31 -7.66 -42.08 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -7.75 Total: 2.00 kcal Atomic # 6 Polarization: 8.02 SS G_CDS: -1.39 Total: 6.63 kcal Atomic # 7 Polarization: -59.01 SS G_CDS: 1.20 Total: -57.82 kcal Atomic # 8 Polarization: -15.12 SS G_CDS: -0.28 Total: -15.40 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.42 -7.66 -42.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082072746.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.430 kcal (2) G-P(sol) polarization free energy of solvation -34.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds