Wall clock time and date at job start Tue Mar 31 2020 18:31:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42904 * 113.99859 * 2 1 4 4 H 1.09000 * 110.64531 * 26.85093 * 3 2 1 5 5 C 1.54330 * 110.86557 * 263.60479 * 3 2 1 6 6 N 1.47026 * 107.26845 * 219.37155 * 5 3 2 7 7 C 1.36931 * 125.64635 * 178.90545 * 6 5 3 8 8 H 1.08005 * 120.00111 * 174.87866 * 7 6 5 9 9 C 1.38808 * 120.00171 * 354.87324 * 7 6 5 10 10 N 1.31619 * 119.99832 * 7.06985 * 9 7 6 11 11 Si 1.86805 * 120.00074 * 187.06514 * 9 7 6 12 12 H 1.48498 * 109.46916 * 94.99093 * 11 9 7 13 13 H 1.48499 * 109.47073 * 214.98687 * 11 9 7 14 14 H 1.48495 * 109.47088 * 334.98888 * 11 9 7 15 15 C 1.47468 * 108.72374 * 358.97555 * 6 5 3 16 16 C 1.54916 * 104.81001 * 24.06900 * 15 6 5 17 17 H 1.08999 * 111.00045 * 81.13778 * 16 15 6 18 18 N 1.46496 * 111.00559 * 204.94797 * 16 15 6 19 19 C 1.34779 * 120.00010 * 270.42129 * 18 16 15 20 20 O 1.21279 * 119.99916 * 0.02562 * 19 18 16 21 21 C 1.50700 * 119.99808 * 179.97438 * 19 18 16 22 22 H 1.09004 * 109.69079 * 59.45921 * 21 19 18 23 23 C 1.53444 * 109.69159 * 179.97438 * 21 19 18 24 24 C 1.53105 * 109.54969 * 169.43265 * 23 21 19 25 25 C 1.53423 * 109.58003 * 289.93700 * 24 23 21 26 26 C 1.50600 * 108.33301 * 49.81720 * 25 24 23 27 27 N 1.32914 * 129.15917 * 163.40111 * 26 25 24 28 28 N 1.29015 * 108.63412 * 180.18387 * 27 26 25 29 29 N 1.29109 * 110.25780 * 359.97438 * 28 27 26 30 30 H 0.97000 * 126.00162 * 179.97438 * 29 28 27 31 31 C 1.34396 * 107.98881 * 359.93830 * 29 28 27 32 32 H 1.08997 * 109.47048 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47729 * 300.00804 * 1 2 3 34 34 H 1.09004 * 109.47026 * 60.01077 * 1 2 3 35 35 H 1.09000 * 109.88364 * 338.78631 * 5 3 2 36 36 H 1.09000 * 109.88034 * 99.80389 * 5 3 2 37 37 H 0.97007 * 119.99441 * 179.97438 * 10 9 7 38 38 H 1.08999 * 110.35122 * 265.25154 * 15 6 5 39 39 H 1.08994 * 110.40639 * 142.91540 * 15 6 5 40 40 H 0.96999 * 119.99791 * 90.41417 * 18 16 15 41 41 H 1.08995 * 109.45193 * 49.40941 * 23 21 19 42 42 H 1.08992 * 109.44387 * 289.44711 * 23 21 19 43 43 H 1.09002 * 109.45291 * 169.90951 * 24 23 21 44 44 H 1.09002 * 109.45941 * 49.96981 * 24 23 21 45 45 H 1.09002 * 109.69292 * 290.10910 * 25 24 23 46 46 H 1.09008 * 109.72277 * 169.54828 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3351 2.0267 0.4607 5 6 2.3805 1.7423 -1.4331 6 7 3.6669 2.4499 -1.3550 7 6 4.3524 2.9789 -2.4158 8 1 5.2509 3.5536 -2.2458 9 6 3.8925 2.7766 -3.7098 10 7 2.7276 2.1981 -3.9113 11 14 4.9269 3.3256 -5.1652 12 1 5.7396 2.1829 -5.6540 13 1 4.0363 3.8012 -6.2542 14 1 5.8271 4.4291 -4.7445 15 6 4.0980 2.4943 0.0546 16 6 3.3815 1.2959 0.7257 17 1 3.9168 0.3653 0.5372 18 7 3.2162 1.5212 2.1637 19 6 4.1768 1.1260 3.0226 20 8 5.1782 0.5842 2.6048 21 6 4.0069 1.3584 4.5018 22 1 3.1084 0.8507 4.8526 23 6 5.2313 0.8197 5.2538 24 6 5.1833 1.2859 6.7113 25 6 5.4414 2.7969 6.7766 26 6 4.5352 3.4756 5.7835 27 7 4.1948 4.7575 5.6975 28 7 3.3924 4.9048 4.6980 29 7 3.1881 3.7697 4.1177 30 1 2.6233 3.6184 3.3438 31 6 3.8964 2.8347 4.7739 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3634 0.5139 0.8898 34 1 -0.3633 0.5137 -0.8901 35 1 2.4777 0.8662 -2.0743 36 1 1.6124 2.4073 -1.8280 37 1 2.4061 2.0570 -4.8156 38 1 3.7856 3.4305 0.5172 39 1 5.1794 2.3777 0.1251 40 1 2.4154 1.9550 2.4978 41 1 6.1401 1.1938 4.7825 42 1 5.2270 -0.2697 5.2207 43 1 5.9476 0.7621 7.2853 44 1 4.2012 1.0671 7.1304 45 1 6.4818 3.0030 6.5250 46 1 5.2267 3.1637 7.7804 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001082072746.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:31 Heat of formation + Delta-G solvation = 14.668004 kcal Electronic energy + Delta-G solvation = -30062.964804 eV Core-core repulsion = 25989.439874 eV Total energy + Delta-G solvation = -4073.524931 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.63332 -41.34807 -39.86434 -37.81821 -37.47447 -35.89465 -34.98961 -33.71098 -31.70387 -31.16191 -30.52599 -28.94988 -27.55608 -26.41189 -25.47193 -24.32879 -23.65343 -22.57992 -22.12880 -21.79804 -20.53882 -19.53257 -19.04576 -18.34392 -17.91791 -17.36496 -17.26569 -16.64543 -16.54021 -15.91812 -15.85073 -15.52650 -15.27228 -15.09374 -14.87901 -14.83469 -14.67203 -14.29546 -14.12214 -13.69451 -13.29238 -13.17176 -13.03559 -12.82504 -12.71092 -12.61141 -12.44403 -12.36666 -12.24039 -12.10497 -12.00092 -11.93401 -11.71478 -11.63917 -11.37283 -11.13023 -10.80813 -10.66624 -10.27361 -9.97254 -9.02394 -7.94311 -5.30959 0.36724 1.27542 1.42481 1.43453 1.44964 1.53184 1.61730 1.85512 2.41661 2.70943 3.16208 3.23559 3.27288 3.43280 3.50940 3.67958 3.81364 3.83368 3.92141 4.01227 4.17862 4.28412 4.29310 4.33690 4.37645 4.46811 4.55009 4.60172 4.62574 4.72903 4.85650 4.87312 4.99551 5.01496 5.14154 5.19864 5.22777 5.28041 5.34561 5.38823 5.48589 5.61478 5.71598 6.08436 6.24340 6.27202 6.98088 7.00601 7.30230 7.64192 8.25927 9.15350 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.014122 B = 0.003271 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1982.210145 B = 8559.322679 C = 9272.564589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.394 6.394 3 C 0.077 3.923 4 H 0.099 0.901 5 C 0.172 3.828 6 N -0.620 5.620 7 C -0.252 4.252 8 H 0.080 0.920 9 C -0.056 4.056 10 N -0.943 5.943 11 Si 0.977 3.023 12 H -0.288 1.288 13 H -0.290 1.290 14 H -0.269 1.269 15 C 0.131 3.869 16 C 0.152 3.848 17 H 0.082 0.918 18 N -0.707 5.707 19 C 0.515 3.485 20 O -0.556 6.556 21 C -0.017 4.017 22 H 0.160 0.840 23 C -0.100 4.100 24 C -0.107 4.107 25 C -0.039 4.039 26 C -0.010 4.010 27 N -0.288 5.288 28 N -0.108 5.108 29 N -0.370 5.370 30 H 0.452 0.548 31 C -0.009 4.009 32 H 0.101 0.899 33 H 0.067 0.933 34 H 0.034 0.966 35 H 0.020 0.980 36 H 0.021 0.979 37 H 0.250 0.750 38 H 0.036 0.964 39 H 0.033 0.967 40 H 0.406 0.594 41 H 0.059 0.941 42 H 0.096 0.904 43 H 0.105 0.895 44 H 0.087 0.913 45 H 0.086 0.914 46 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.750 -4.677 23.572 24.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.313 6.313 3 C 0.018 3.982 4 H 0.116 0.884 5 C 0.046 3.954 6 N -0.347 5.347 7 C -0.380 4.380 8 H 0.098 0.902 9 C -0.250 4.250 10 N -0.591 5.591 11 Si 0.805 3.195 12 H -0.215 1.215 13 H -0.216 1.216 14 H -0.194 1.194 15 C 0.004 3.996 16 C 0.046 3.954 17 H 0.100 0.900 18 N -0.360 5.360 19 C 0.302 3.698 20 O -0.433 6.433 21 C -0.040 4.040 22 H 0.177 0.823 23 C -0.139 4.139 24 C -0.145 4.145 25 C -0.078 4.078 26 C -0.151 4.151 27 N -0.154 5.154 28 N -0.086 5.086 29 N -0.092 5.092 30 H 0.301 0.699 31 C -0.145 4.145 32 H 0.119 0.881 33 H 0.086 0.914 34 H 0.053 0.947 35 H 0.039 0.961 36 H 0.039 0.961 37 H 0.059 0.941 38 H 0.054 0.946 39 H 0.051 0.949 40 H 0.243 0.757 41 H 0.078 0.922 42 H 0.115 0.885 43 H 0.123 0.877 44 H 0.106 0.894 45 H 0.104 0.896 46 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -3.219 -3.628 23.159 23.661 hybrid contribution -0.326 -0.211 -2.191 2.225 sum -3.545 -3.840 20.968 21.609 Atomic orbital electron populations 1.23015 0.79218 1.04032 1.00834 1.87905 1.21794 1.26694 1.94897 1.23474 0.93492 0.85496 0.95778 0.88363 1.21322 0.86987 0.94854 0.92217 1.44478 1.21912 1.66366 1.01985 1.19396 1.06132 1.27204 0.85309 0.90219 1.25636 0.98380 1.01131 0.99810 1.70146 1.19571 1.49216 1.20190 0.85095 0.77815 0.77761 0.78873 1.21467 1.21596 1.19377 1.21914 0.97269 0.95520 0.84887 1.21865 0.95806 0.98520 0.79250 0.89985 1.45857 1.22483 1.61861 1.05802 1.21062 0.82383 0.77355 0.89041 1.90756 1.29789 1.43067 1.79650 1.20183 1.05782 0.87779 0.90278 0.82273 1.21546 0.94631 1.02266 0.95406 1.21658 1.04863 0.93089 0.94896 1.20240 0.96640 0.94640 0.96287 1.22339 1.02879 0.89614 1.00284 1.74833 1.10171 1.18290 1.12062 1.78580 1.17097 1.06656 1.06271 1.44858 1.33535 1.05858 1.24902 0.69916 1.21680 1.00941 0.94171 0.97731 0.88056 0.91450 0.94740 0.96138 0.96088 0.94082 0.94611 0.94863 0.75722 0.92177 0.88502 0.87700 0.89445 0.89581 0.88160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.58 10.85 113.37 1.23 1.81 16 2 O -0.39 -12.88 10.44 -148.98 -1.56 -14.44 16 3 C 0.08 2.61 3.08 31.78 0.10 2.70 16 4 H 0.10 2.61 7.68 -2.39 -0.02 2.59 16 5 C 0.17 8.25 5.16 86.73 0.45 8.70 16 6 N -0.62 -31.80 3.40 -691.85 -2.35 -34.15 16 7 C -0.25 -14.29 10.26 84.03 0.86 -13.43 16 8 H 0.08 4.40 7.84 -2.91 -0.02 4.38 16 9 C -0.06 -3.17 5.48 84.86 0.46 -2.70 16 10 N -0.94 -56.03 10.36 21.65 0.22 -55.81 16 11 Si 0.98 46.03 29.56 68.60 2.03 48.06 16 12 H -0.29 -13.50 7.11 99.48 0.71 -12.80 16 13 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 14 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 15 C 0.13 5.39 6.93 86.85 0.60 5.99 16 16 C 0.15 5.15 3.09 46.38 0.14 5.29 16 17 H 0.08 3.32 7.63 -2.39 -0.02 3.30 16 18 N -0.71 -16.20 4.77 -435.97 -2.08 -18.28 16 19 C 0.52 12.31 7.13 87.66 0.63 12.93 16 20 O -0.56 -18.61 15.52 -3.03 -0.05 -18.65 16 21 C -0.02 -0.25 2.90 -12.19 -0.04 -0.29 16 22 H 0.16 1.16 8.14 -2.38 -0.02 1.14 16 23 C -0.10 -1.35 4.67 30.78 0.14 -1.20 16 24 C -0.11 -0.86 5.90 30.77 0.18 -0.68 16 25 C -0.04 -0.50 6.30 29.96 0.19 -0.31 16 26 C -0.01 -0.21 7.11 41.75 0.30 0.08 16 27 N -0.29 -7.70 12.40 -48.99 -0.61 -8.30 16 28 N -0.11 -2.82 13.40 37.02 0.50 -2.33 16 29 N -0.37 -7.31 6.77 -48.28 -0.33 -7.64 16 30 H 0.45 6.76 6.90 -219.68 -1.52 5.24 16 31 C -0.01 -0.16 6.38 41.50 0.26 0.11 16 32 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.07 1.12 8.11 -2.39 -0.02 1.10 16 34 H 0.03 0.88 8.14 -2.38 -0.02 0.86 16 35 H 0.02 1.15 7.22 -2.39 -0.02 1.13 16 36 H 0.02 1.10 7.61 -2.39 -0.02 1.08 16 37 H 0.25 14.40 8.31 -92.70 -0.77 13.63 16 38 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.41 6.10 6.71 -92.71 -0.62 5.48 16 41 H 0.06 1.13 7.73 -2.39 -0.02 1.11 16 42 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 44 H 0.09 0.46 8.12 -2.39 -0.02 0.44 16 45 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 46 H 0.10 1.03 8.14 -2.38 -0.02 1.01 16 Total: -1.00 -79.83 370.31 0.18 -79.65 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -1.12 Total: 12.90 kcal Atomic # 6 Polarization: 13.48 SS G_CDS: 5.51 Total: 18.99 kcal Atomic # 7 Polarization: -121.86 SS G_CDS: -4.64 Total: -126.51 kcal Atomic # 8 Polarization: -31.49 SS G_CDS: -1.60 Total: -33.09 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.06 kcal Total: -79.83 0.18 -79.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082072746.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.315 kcal (2) G-P(sol) polarization free energy of solvation -79.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds