Wall clock time and date at job start Tue Mar 31 2020 18:31:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42903 * 113.99551 * 2 1 4 4 H 1.08999 * 110.64552 * 26.85470 * 3 2 1 5 5 C 1.54332 * 110.84591 * 263.68702 * 3 2 1 6 6 N 1.47029 * 107.26368 * 219.67566 * 5 3 2 7 7 C 1.36933 * 125.64512 * 178.85299 * 6 5 3 8 8 H 1.08006 * 120.00013 * 189.98651 * 7 6 5 9 9 C 1.38811 * 120.00198 * 9.98249 * 7 6 5 10 10 N 1.31623 * 119.99997 * 194.86222 * 9 7 6 11 11 Si 1.86794 * 120.00243 * 14.86103 * 9 7 6 12 12 H 1.48493 * 109.47424 * 174.71547 * 11 9 7 13 13 H 1.48506 * 109.46929 * 294.71669 * 11 9 7 14 14 H 1.48496 * 109.47180 * 54.71167 * 11 9 7 15 15 C 1.47425 * 108.70443 * 358.58749 * 6 5 3 16 16 C 1.54909 * 104.83093 * 24.35407 * 15 6 5 17 17 H 1.08997 * 111.00376 * 81.10322 * 16 15 6 18 18 N 1.46496 * 111.00296 * 204.91877 * 16 15 6 19 19 C 1.34776 * 119.99853 * 273.54581 * 18 16 15 20 20 O 1.21282 * 120.00051 * 0.02562 * 19 18 16 21 21 C 1.50704 * 120.00335 * 180.02562 * 19 18 16 22 22 H 1.09005 * 109.68858 * 300.55425 * 21 19 18 23 23 C 1.53434 * 109.69827 * 179.97438 * 21 19 18 24 24 C 1.53103 * 109.55455 * 190.56650 * 23 21 19 25 25 C 1.53420 * 109.58208 * 70.05594 * 24 23 21 26 26 C 1.50594 * 108.33505 * 310.17183 * 25 24 23 27 27 N 1.32905 * 129.16610 * 196.57187 * 26 25 24 28 28 N 1.29018 * 108.63896 * 179.85464 * 27 26 25 29 29 N 1.29115 * 110.25779 * 0.02850 * 28 27 26 30 30 H 0.97000 * 126.00507 * 180.02562 * 29 28 27 31 31 C 1.34392 * 107.98180 * 0.06668 * 29 28 27 32 32 H 1.08999 * 109.46692 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47257 * 300.00200 * 1 2 3 34 34 H 1.08996 * 109.46956 * 60.00540 * 1 2 3 35 35 H 1.08997 * 109.99246 * 100.20178 * 5 3 2 36 36 H 1.08994 * 109.78153 * 339.03042 * 5 3 2 37 37 H 0.97004 * 120.00287 * 355.02085 * 10 9 7 38 38 H 1.08996 * 110.36595 * 143.19759 * 15 6 5 39 39 H 1.09001 * 110.36278 * 265.52021 * 15 6 5 40 40 H 0.97002 * 120.00130 * 93.55063 * 18 16 15 41 41 H 1.08995 * 109.45637 * 310.59411 * 23 21 19 42 42 H 1.08999 * 109.45096 * 70.53973 * 23 21 19 43 43 H 1.09001 * 109.45129 * 190.09363 * 24 23 21 44 44 H 1.08998 * 109.45278 * 310.01932 * 24 23 21 45 45 H 1.09000 * 109.68927 * 69.88151 * 25 24 23 46 46 H 1.09000 * 109.68873 * 190.46379 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3351 2.0267 0.4608 5 6 2.3784 1.7428 -1.4335 6 7 3.6686 2.4439 -1.3581 7 6 4.3540 2.9703 -2.4202 8 1 5.3661 3.3236 -2.2881 9 6 3.7482 3.0500 -3.6666 10 7 4.4770 3.2743 -4.7394 11 14 1.8987 2.8387 -3.8213 12 1 1.4872 3.0931 -5.2253 13 1 1.5251 1.4532 -3.4393 14 1 1.2136 3.8018 -2.9224 15 6 4.0988 2.4919 0.0512 16 6 3.3816 1.2959 0.7257 17 1 3.9161 0.3644 0.5397 18 7 3.2166 1.5254 2.1631 19 6 4.2039 1.1893 3.0168 20 8 5.2290 0.6973 2.5950 21 6 4.0340 1.4249 4.4956 22 1 3.8682 2.4860 4.6819 23 6 5.2914 0.9587 5.2413 24 6 5.0204 0.9514 6.7482 25 6 4.0418 -0.1800 7.0891 26 6 2.8635 -0.0843 6.1562 27 7 1.6621 -0.6429 6.2614 28 7 0.9548 -0.2951 5.2399 29 7 1.6415 0.4724 4.4611 30 1 1.3321 0.8650 3.6298 31 6 2.8605 0.6309 5.0042 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5139 0.8900 34 1 -0.3633 0.5137 -0.8900 35 1 1.6144 2.4136 -1.8264 36 1 2.4700 0.8660 -2.0746 37 1 5.4259 3.4557 -4.6520 38 1 5.1801 2.3747 0.1219 39 1 3.7870 3.4296 0.5112 40 1 2.3968 1.9192 2.5005 41 1 5.5551 -0.0472 4.9149 42 1 6.1153 1.6384 5.0238 43 1 5.9564 0.7958 7.2846 44 1 4.5876 1.9071 7.0438 45 1 4.5350 -1.1434 6.9602 46 1 3.7036 -0.0748 8.1199 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082072747.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:35 Heat of formation + Delta-G solvation = 51.645843 kcal Electronic energy + Delta-G solvation = -30199.511227 eV Core-core repulsion = 26127.589776 eV Total energy + Delta-G solvation = -4071.921451 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.87447 -40.35821 -38.86318 -37.12542 -36.35212 -34.77614 -34.04540 -32.18260 -31.00828 -30.47340 -29.20772 -28.14347 -26.49814 -25.25733 -23.92288 -23.46063 -22.92083 -21.36463 -21.25941 -20.42465 -19.92939 -18.69242 -17.84760 -17.31187 -17.02549 -16.54597 -16.38988 -15.80212 -15.27049 -14.92740 -14.91824 -14.44051 -14.33113 -14.19355 -14.15849 -13.73922 -13.62267 -13.33308 -12.84093 -12.63272 -12.32738 -12.09590 -12.01779 -11.90841 -11.75249 -11.65131 -11.43851 -11.42235 -11.25147 -11.02191 -10.82979 -10.71372 -10.25345 -10.19775 -9.96912 -9.43343 -9.31140 -9.23066 -9.04926 -8.72170 -7.21816 -6.38384 -3.33498 1.11642 2.10352 2.20076 2.39377 2.76502 3.29921 3.35462 3.58782 3.64614 3.83058 3.96975 4.19313 4.32780 4.47711 4.50102 4.56732 4.75828 4.82855 4.85140 4.89121 5.01059 5.04287 5.10107 5.17473 5.19403 5.34301 5.38088 5.48522 5.51863 5.55030 5.61475 5.64196 5.65131 5.66671 5.87036 5.94308 6.01466 6.08351 6.35328 6.37360 6.37701 6.51121 7.11443 7.17701 7.50496 7.88362 8.08327 8.22987 8.93790 9.43338 10.07586 11.11121 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.018971 B = 0.003360 C = 0.002934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.551625 B = 8330.855916 C = 9541.303071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.374 6.374 3 C 0.069 3.931 4 H 0.072 0.928 5 C 0.095 3.905 6 N -0.605 5.605 7 C -0.325 4.325 8 H 0.081 0.919 9 C -0.022 4.022 10 N -0.925 5.925 11 Si 1.073 2.927 12 H -0.298 1.298 13 H -0.284 1.284 14 H -0.299 1.299 15 C 0.132 3.868 16 C 0.133 3.867 17 H 0.112 0.888 18 N -0.723 5.723 19 C 0.517 3.483 20 O -0.510 6.510 21 C -0.031 4.031 22 H 0.121 0.879 23 C -0.099 4.099 24 C -0.119 4.119 25 C -0.036 4.036 26 C -0.003 4.003 27 N -0.257 5.257 28 N -0.079 5.079 29 N -0.379 5.379 30 H 0.443 0.557 31 C -0.012 4.012 32 H 0.087 0.913 33 H 0.037 0.963 34 H 0.046 0.954 35 H 0.035 0.965 36 H 0.064 0.936 37 H 0.263 0.737 38 H 0.059 0.941 39 H 0.028 0.972 40 H 0.386 0.614 41 H 0.084 0.916 42 H 0.087 0.913 43 H 0.083 0.917 44 H 0.070 0.930 45 H 0.087 0.913 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.160 -3.121 23.617 24.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.292 6.292 3 C 0.010 3.990 4 H 0.090 0.910 5 C -0.030 4.030 6 N -0.334 5.334 7 C -0.452 4.452 8 H 0.099 0.901 9 C -0.222 4.222 10 N -0.567 5.567 11 Si 0.907 3.093 12 H -0.226 1.226 13 H -0.211 1.211 14 H -0.228 1.228 15 C 0.005 3.995 16 C 0.028 3.972 17 H 0.130 0.870 18 N -0.375 5.375 19 C 0.301 3.699 20 O -0.383 6.383 21 C -0.055 4.055 22 H 0.138 0.862 23 C -0.137 4.137 24 C -0.157 4.157 25 C -0.076 4.076 26 C -0.143 4.143 27 N -0.123 5.123 28 N -0.058 5.058 29 N -0.099 5.099 30 H 0.290 0.710 31 C -0.148 4.148 32 H 0.106 0.894 33 H 0.056 0.944 34 H 0.065 0.935 35 H 0.052 0.948 36 H 0.082 0.918 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.046 0.954 40 H 0.220 0.780 41 H 0.102 0.898 42 H 0.105 0.895 43 H 0.102 0.898 44 H 0.089 0.911 45 H 0.105 0.895 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -6.818 -4.495 22.459 23.898 hybrid contribution 1.108 1.482 0.362 1.885 sum -5.709 -3.014 22.821 23.717 Atomic orbital electron populations 1.22839 0.81141 1.02920 1.00000 1.87977 1.19551 1.26781 1.94922 1.23447 0.93651 0.84724 0.97159 0.90977 1.22424 0.89627 0.96737 0.94227 1.44591 1.20743 1.65957 1.02114 1.20171 0.97171 1.40063 0.87815 0.90077 1.25826 1.06439 0.99214 0.90705 1.70908 1.08392 1.49305 1.28052 0.83788 0.75425 0.76104 0.73935 1.22642 1.21144 1.22813 1.21840 0.98539 0.93577 0.85587 1.22466 0.95822 1.01668 0.77197 0.87011 1.46065 1.18889 1.64685 1.07837 1.20346 0.83783 0.78204 0.87555 1.90774 1.27306 1.41759 1.78511 1.20094 0.92697 1.00554 0.92139 0.86176 1.21494 0.94327 1.04104 0.93788 1.21680 0.99690 0.98726 0.95621 1.20047 0.90154 1.00236 0.97115 1.21730 0.95971 0.99740 0.96831 1.74858 1.02967 1.19688 1.14779 1.78611 1.19628 1.08450 0.99084 1.44823 1.09658 1.34612 1.20817 0.71008 1.21469 0.88925 1.06651 0.97726 0.89423 0.94413 0.93516 0.94780 0.91783 0.92682 0.92252 0.95435 0.78041 0.89767 0.89450 0.89807 0.91148 0.89487 0.89429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.85 101.05 1.10 1.40 16 2 O -0.37 -5.68 10.44 -35.23 -0.37 -6.04 16 3 C 0.07 1.08 3.06 -24.89 -0.08 1.01 16 4 H 0.07 0.91 7.67 -51.93 -0.40 0.51 16 5 C 0.10 2.00 4.39 -3.06 -0.01 1.99 16 6 N -0.60 -14.41 3.33 -170.07 -0.57 -14.98 16 7 C -0.33 -9.19 10.56 -15.06 -0.16 -9.34 16 8 H 0.08 2.42 8.06 -52.48 -0.42 2.00 16 9 C -0.02 -0.64 5.50 -17.43 -0.10 -0.74 16 10 N -0.93 -28.84 13.70 55.49 0.76 -28.08 16 11 Si 1.07 26.16 24.53 -169.99 -4.17 21.99 16 12 H -0.30 -7.46 7.11 56.52 0.40 -7.06 16 13 H -0.28 -6.36 5.40 56.52 0.31 -6.06 16 14 H -0.30 -6.88 6.83 56.52 0.39 -6.49 16 15 C 0.13 2.55 6.93 -2.53 -0.02 2.53 16 16 C 0.13 2.12 3.04 -65.78 -0.20 1.92 16 17 H 0.11 2.07 7.73 -51.93 -0.40 1.67 16 18 N -0.72 -8.30 4.79 -51.73 -0.25 -8.54 16 19 C 0.52 6.24 7.13 -10.98 -0.08 6.17 16 20 O -0.51 -8.28 15.57 5.56 0.09 -8.19 16 21 C -0.03 -0.26 2.90 -92.77 -0.27 -0.53 16 22 H 0.12 0.69 8.14 -51.93 -0.42 0.27 16 23 C -0.10 -0.75 4.67 -26.45 -0.12 -0.88 16 24 C -0.12 -0.65 5.90 -26.46 -0.16 -0.80 16 25 C -0.04 -0.25 6.30 -27.72 -0.17 -0.43 16 26 C 0.00 -0.03 7.11 -83.13 -0.59 -0.62 16 27 N -0.26 -3.27 12.40 33.16 0.41 -2.86 16 28 N -0.08 -0.96 13.40 60.35 0.81 -0.15 16 29 N -0.38 -3.62 6.77 33.39 0.23 -3.40 16 30 H 0.44 3.21 6.90 -190.07 -1.31 1.90 16 31 C -0.01 -0.11 6.38 -82.49 -0.53 -0.64 16 32 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.04 0.32 8.11 -51.93 -0.42 -0.10 16 34 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.04 0.74 3.88 -51.93 -0.20 0.54 16 36 H 0.06 1.47 6.61 -51.93 -0.34 1.13 16 37 H 0.26 8.11 8.73 -40.82 -0.36 7.75 16 38 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.39 3.12 6.68 -40.82 -0.27 2.85 16 41 H 0.08 0.79 7.74 -51.93 -0.40 0.39 16 42 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 44 H 0.07 0.33 8.12 -51.93 -0.42 -0.09 16 45 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 362.48 15.07 5.46 5.46 Total: -1.00 -36.11 362.48 -6.65 -42.76 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -7.67 Total: 1.00 kcal Atomic # 6 Polarization: 2.42 SS G_CDS: -1.39 Total: 1.04 kcal Atomic # 7 Polarization: -59.40 SS G_CDS: 1.39 Total: -58.01 kcal Atomic # 8 Polarization: -13.96 SS G_CDS: -0.28 Total: -14.24 kcal Atomic # 14 Polarization: 26.16 SS G_CDS: -4.17 Total: 21.99 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -36.11 -6.65 -42.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082072747.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.403 kcal (2) G-P(sol) polarization free energy of solvation -36.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.757 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds