Wall clock time and date at job start Tue Mar 31 2020 18:31:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42903 * 113.99551 * 2 1 4 4 H 1.08999 * 110.64552 * 26.85470 * 3 2 1 5 5 C 1.54332 * 110.84591 * 263.68702 * 3 2 1 6 6 N 1.47029 * 107.26368 * 219.67566 * 5 3 2 7 7 C 1.36933 * 125.64512 * 178.85299 * 6 5 3 8 8 H 1.08006 * 120.00013 * 189.98651 * 7 6 5 9 9 C 1.38811 * 120.00198 * 9.98249 * 7 6 5 10 10 N 1.31623 * 119.99997 * 194.86222 * 9 7 6 11 11 Si 1.86794 * 120.00243 * 14.86103 * 9 7 6 12 12 H 1.48493 * 109.47424 * 174.71547 * 11 9 7 13 13 H 1.48506 * 109.46929 * 294.71669 * 11 9 7 14 14 H 1.48496 * 109.47180 * 54.71167 * 11 9 7 15 15 C 1.47425 * 108.70443 * 358.58749 * 6 5 3 16 16 C 1.54909 * 104.83093 * 24.35407 * 15 6 5 17 17 H 1.08997 * 111.00376 * 81.10322 * 16 15 6 18 18 N 1.46496 * 111.00296 * 204.91877 * 16 15 6 19 19 C 1.34776 * 119.99853 * 273.54581 * 18 16 15 20 20 O 1.21282 * 120.00051 * 0.02562 * 19 18 16 21 21 C 1.50704 * 120.00335 * 180.02562 * 19 18 16 22 22 H 1.09005 * 109.68858 * 300.55425 * 21 19 18 23 23 C 1.53434 * 109.69827 * 179.97438 * 21 19 18 24 24 C 1.53103 * 109.55455 * 190.56650 * 23 21 19 25 25 C 1.53420 * 109.58208 * 70.05594 * 24 23 21 26 26 C 1.50594 * 108.33505 * 310.17183 * 25 24 23 27 27 N 1.32905 * 129.16610 * 196.57187 * 26 25 24 28 28 N 1.29018 * 108.63896 * 179.85464 * 27 26 25 29 29 N 1.29115 * 110.25779 * 0.02850 * 28 27 26 30 30 H 0.97000 * 126.00507 * 180.02562 * 29 28 27 31 31 C 1.34392 * 107.98180 * 0.06668 * 29 28 27 32 32 H 1.08999 * 109.46692 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47257 * 300.00200 * 1 2 3 34 34 H 1.08996 * 109.46956 * 60.00540 * 1 2 3 35 35 H 1.08997 * 109.99246 * 100.20178 * 5 3 2 36 36 H 1.08994 * 109.78153 * 339.03042 * 5 3 2 37 37 H 0.97004 * 120.00287 * 355.02085 * 10 9 7 38 38 H 1.08996 * 110.36595 * 143.19759 * 15 6 5 39 39 H 1.09001 * 110.36278 * 265.52021 * 15 6 5 40 40 H 0.97002 * 120.00130 * 93.55063 * 18 16 15 41 41 H 1.08995 * 109.45637 * 310.59411 * 23 21 19 42 42 H 1.08999 * 109.45096 * 70.53973 * 23 21 19 43 43 H 1.09001 * 109.45129 * 190.09363 * 24 23 21 44 44 H 1.08998 * 109.45278 * 310.01932 * 24 23 21 45 45 H 1.09000 * 109.68927 * 69.88151 * 25 24 23 46 46 H 1.09000 * 109.68873 * 190.46379 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3351 2.0267 0.4608 5 6 2.3784 1.7428 -1.4335 6 7 3.6686 2.4439 -1.3581 7 6 4.3540 2.9703 -2.4202 8 1 5.3661 3.3236 -2.2881 9 6 3.7482 3.0500 -3.6666 10 7 4.4770 3.2743 -4.7394 11 14 1.8987 2.8387 -3.8213 12 1 1.4872 3.0931 -5.2253 13 1 1.5251 1.4532 -3.4393 14 1 1.2136 3.8018 -2.9224 15 6 4.0988 2.4919 0.0512 16 6 3.3816 1.2959 0.7257 17 1 3.9161 0.3644 0.5397 18 7 3.2166 1.5254 2.1631 19 6 4.2039 1.1893 3.0168 20 8 5.2290 0.6973 2.5950 21 6 4.0340 1.4249 4.4956 22 1 3.8682 2.4860 4.6819 23 6 5.2914 0.9587 5.2413 24 6 5.0204 0.9514 6.7482 25 6 4.0418 -0.1800 7.0891 26 6 2.8635 -0.0843 6.1562 27 7 1.6621 -0.6429 6.2614 28 7 0.9548 -0.2951 5.2399 29 7 1.6415 0.4724 4.4611 30 1 1.3321 0.8650 3.6298 31 6 2.8605 0.6309 5.0042 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5139 0.8900 34 1 -0.3633 0.5137 -0.8900 35 1 1.6144 2.4136 -1.8264 36 1 2.4700 0.8660 -2.0746 37 1 5.4259 3.4557 -4.6520 38 1 5.1801 2.3747 0.1219 39 1 3.7870 3.4296 0.5112 40 1 2.3968 1.9192 2.5005 41 1 5.5551 -0.0472 4.9149 42 1 6.1153 1.6384 5.0238 43 1 5.9564 0.7958 7.2846 44 1 4.5876 1.9071 7.0438 45 1 4.5350 -1.1434 6.9602 46 1 3.7036 -0.0748 8.1199 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001082072747.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:34 Heat of formation + Delta-G solvation = 21.591098 kcal Electronic energy + Delta-G solvation = -30200.814498 eV Core-core repulsion = 26127.589776 eV Total energy + Delta-G solvation = -4073.224723 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.64372 -41.45991 -40.09214 -37.90145 -37.63806 -35.99832 -35.04201 -34.07867 -31.83104 -31.17689 -30.67913 -29.61433 -27.56069 -26.28678 -25.25744 -24.32326 -23.65531 -22.89649 -22.35275 -21.87900 -20.56458 -19.85689 -19.40487 -18.37886 -18.21273 -17.79615 -17.35666 -16.66445 -16.46078 -16.21764 -15.94946 -15.64730 -15.43328 -15.11795 -15.09607 -14.87910 -14.78030 -14.59376 -14.36612 -13.83514 -13.58628 -13.42099 -13.19469 -13.06905 -12.70592 -12.50874 -12.45543 -12.37753 -12.26767 -12.01771 -11.85000 -11.68821 -11.59988 -11.38900 -11.24588 -11.17653 -10.96988 -10.68378 -10.30608 -9.98586 -9.25386 -8.69069 -5.56670 0.35259 1.24697 1.33720 1.40775 1.44824 1.56689 1.66031 1.80973 2.48070 2.50642 3.02766 3.14612 3.20920 3.23186 3.38466 3.56371 3.59631 3.70922 3.79949 3.89838 4.12417 4.16272 4.20863 4.27022 4.31664 4.38562 4.44508 4.49033 4.57558 4.58161 4.71131 4.73519 4.83196 4.84260 4.97040 4.98874 5.11580 5.14448 5.19905 5.32435 5.44853 5.46003 5.71493 6.00320 6.08597 6.18806 6.72915 6.94186 7.29024 7.33080 7.95746 8.81213 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.018971 B = 0.003360 C = 0.002934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.551625 B = 8330.855916 C = 9541.303071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.392 6.392 3 C 0.087 3.913 4 H 0.118 0.882 5 C 0.085 3.915 6 N -0.626 5.626 7 C -0.316 4.316 8 H 0.046 0.954 9 C -0.081 4.081 10 N -0.962 5.962 11 Si 1.111 2.889 12 H -0.311 1.311 13 H -0.255 1.255 14 H -0.270 1.270 15 C 0.131 3.869 16 C 0.151 3.849 17 H 0.081 0.919 18 N -0.707 5.707 19 C 0.516 3.484 20 O -0.556 6.556 21 C -0.018 4.018 22 H 0.159 0.841 23 C -0.101 4.101 24 C -0.108 4.108 25 C -0.039 4.039 26 C -0.009 4.009 27 N -0.288 5.288 28 N -0.102 5.102 29 N -0.368 5.368 30 H 0.453 0.547 31 C -0.010 4.010 32 H 0.100 0.900 33 H 0.071 0.929 34 H 0.046 0.954 35 H 0.042 0.958 36 H 0.038 0.962 37 H 0.247 0.753 38 H 0.033 0.967 39 H 0.052 0.948 40 H 0.408 0.592 41 H 0.061 0.939 42 H 0.093 0.907 43 H 0.103 0.897 44 H 0.086 0.914 45 H 0.087 0.913 46 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.632 -2.595 26.778 27.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.311 6.311 3 C 0.028 3.972 4 H 0.136 0.864 5 C -0.040 4.040 6 N -0.355 5.355 7 C -0.445 4.445 8 H 0.064 0.936 9 C -0.274 4.274 10 N -0.606 5.606 11 Si 0.938 3.062 12 H -0.240 1.240 13 H -0.181 1.181 14 H -0.197 1.197 15 C 0.004 3.996 16 C 0.045 3.955 17 H 0.099 0.901 18 N -0.361 5.361 19 C 0.302 3.698 20 O -0.432 6.432 21 C -0.041 4.041 22 H 0.176 0.824 23 C -0.139 4.139 24 C -0.146 4.146 25 C -0.078 4.078 26 C -0.150 4.150 27 N -0.154 5.154 28 N -0.081 5.081 29 N -0.089 5.089 30 H 0.301 0.699 31 C -0.146 4.146 32 H 0.118 0.882 33 H 0.090 0.910 34 H 0.065 0.935 35 H 0.059 0.941 36 H 0.056 0.944 37 H 0.056 0.944 38 H 0.051 0.949 39 H 0.070 0.930 40 H 0.246 0.754 41 H 0.079 0.921 42 H 0.112 0.888 43 H 0.121 0.879 44 H 0.105 0.895 45 H 0.105 0.895 46 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -9.335 -3.976 25.702 27.633 hybrid contribution 2.003 1.273 -0.578 2.443 sum -7.333 -2.703 25.124 26.311 Atomic orbital electron populations 1.23170 0.78801 1.04456 1.01665 1.87974 1.22128 1.26187 1.94789 1.23244 0.94129 0.86238 0.93620 0.86425 1.22554 0.88169 0.95476 0.97793 1.44580 1.21983 1.66053 1.02889 1.20044 0.96146 1.38649 0.89629 0.93602 1.27243 1.10394 0.99250 0.90472 1.71027 1.07712 1.52450 1.29400 0.83391 0.70610 0.78340 0.73865 1.23967 1.18054 1.19651 1.21952 0.97549 0.96172 0.83890 1.21854 0.95610 0.98507 0.79578 0.90111 1.45804 1.19916 1.64569 1.05771 1.21061 0.82852 0.76822 0.89058 1.90771 1.29267 1.43626 1.79529 1.20172 0.92605 1.02568 0.88775 0.82393 1.21538 0.94134 1.02929 0.95313 1.21656 1.00269 0.98819 0.93857 1.20222 0.89383 1.00991 0.97213 1.22286 0.96005 0.99035 0.97682 1.74835 1.04198 1.20834 1.15486 1.78555 1.20305 1.09551 0.99675 1.44809 1.09479 1.33850 1.20812 0.69853 1.21611 0.88948 1.06502 0.97538 0.88178 0.91028 0.93498 0.94072 0.94370 0.94360 0.94882 0.93005 0.75447 0.92066 0.88837 0.87856 0.89537 0.89515 0.88178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.27 10.85 113.37 1.23 1.50 16 2 O -0.39 -10.67 10.44 -148.98 -1.55 -12.22 16 3 C 0.09 2.44 3.06 31.79 0.10 2.53 16 4 H 0.12 2.27 7.67 -2.39 -0.02 2.25 16 5 C 0.09 3.41 4.39 86.73 0.38 3.79 16 6 N -0.63 -29.78 3.33 -691.97 -2.30 -32.08 16 7 C -0.32 -18.45 10.56 84.03 0.89 -17.56 16 8 H 0.05 2.91 8.06 -2.91 -0.02 2.89 16 9 C -0.08 -4.83 5.50 84.86 0.47 -4.36 16 10 N -0.96 -62.40 13.70 21.65 0.30 -62.10 16 11 Si 1.11 52.29 24.53 68.60 1.68 53.98 16 12 H -0.31 -15.16 7.11 99.48 0.71 -14.45 16 13 H -0.26 -10.76 5.40 99.48 0.54 -10.22 16 14 H -0.27 -11.31 6.83 99.48 0.68 -10.63 16 15 C 0.13 4.97 6.93 86.86 0.60 5.57 16 16 C 0.15 4.56 3.04 46.39 0.14 4.70 16 17 H 0.08 3.00 7.73 -2.39 -0.02 2.98 16 18 N -0.71 -14.14 4.79 -435.97 -2.09 -16.23 16 19 C 0.52 11.39 7.13 87.66 0.63 12.01 16 20 O -0.56 -17.86 15.57 -3.03 -0.05 -17.91 16 21 C -0.02 -0.24 2.90 -12.19 -0.04 -0.28 16 22 H 0.16 1.02 8.14 -2.38 -0.02 1.00 16 23 C -0.10 -1.28 4.67 30.77 0.14 -1.14 16 24 C -0.11 -0.80 5.90 30.77 0.18 -0.62 16 25 C -0.04 -0.45 6.30 29.96 0.19 -0.26 16 26 C -0.01 -0.17 7.11 41.75 0.30 0.12 16 27 N -0.29 -6.86 12.40 -48.99 -0.61 -7.47 16 28 N -0.10 -2.29 13.40 37.02 0.50 -1.80 16 29 N -0.37 -5.93 6.77 -48.27 -0.33 -6.26 16 30 H 0.45 4.81 6.90 -219.68 -1.52 3.29 16 31 C -0.01 -0.15 6.38 41.50 0.26 0.11 16 32 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.07 0.83 8.11 -2.39 -0.02 0.81 16 34 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.04 1.64 3.88 -2.39 -0.01 1.63 16 36 H 0.04 1.72 6.61 -2.39 -0.02 1.71 16 37 H 0.25 16.16 8.73 -92.71 -0.81 15.35 16 38 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.41 4.70 6.68 -92.71 -0.62 4.08 16 41 H 0.06 1.08 7.74 -2.39 -0.02 1.07 16 42 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 44 H 0.09 0.42 8.12 -2.39 -0.02 0.40 16 45 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 46 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 Total: -1.00 -84.64 362.48 -0.32 -84.96 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -1.34 Total: 11.02 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: 5.47 Total: 6.12 kcal Atomic # 7 Polarization: -121.41 SS G_CDS: -4.53 Total: -125.94 kcal Atomic # 8 Polarization: -28.53 SS G_CDS: -1.60 Total: -30.13 kcal Atomic # 14 Polarization: 52.29 SS G_CDS: 1.68 Total: 53.98 kcal Total: -84.64 -0.32 -84.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082072747.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.547 kcal (2) G-P(sol) polarization free energy of solvation -84.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds