Wall clock time and date at job start Tue Mar 31 2020 18:31:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42904 * 114.00076 * 2 1 4 4 H 1.08989 * 110.91739 * 26.09675 * 3 2 1 5 5 C 1.54909 * 111.00063 * 262.19362 * 3 2 1 6 6 N 1.47431 * 104.83257 * 204.91664 * 5 3 2 7 7 C 1.36935 * 125.65255 * 204.09755 * 6 5 3 8 8 H 1.07993 * 120.00360 * 169.98533 * 7 6 5 9 9 C 1.38811 * 119.99611 * 349.97822 * 7 6 5 10 10 N 1.31615 * 120.00306 * 350.42648 * 9 7 6 11 11 Si 1.86804 * 119.99748 * 170.42151 * 9 7 6 12 12 H 1.48495 * 109.46892 * 94.14810 * 11 9 7 13 13 H 1.48507 * 109.46772 * 214.14326 * 11 9 7 14 14 H 1.48496 * 109.47490 * 334.14340 * 11 9 7 15 15 C 1.47023 * 108.70209 * 24.12944 * 6 5 3 16 16 C 1.54328 * 107.26851 * 358.94022 * 15 6 5 17 17 H 1.09005 * 110.72130 * 96.34860 * 16 15 6 18 18 N 1.46503 * 110.71928 * 219.44211 * 16 15 6 19 19 C 1.34776 * 120.00188 * 273.54761 * 18 16 15 20 20 O 1.21605 * 119.99870 * 0.02562 * 19 18 16 21 21 C 1.47515 * 120.00318 * 180.02562 * 19 18 16 22 22 C 1.36595 * 125.77579 * 179.71813 * 21 19 18 23 23 N 1.34812 * 106.84565 * 180.26287 * 22 21 19 24 24 C 1.46502 * 126.59981 * 180.02562 * 23 22 21 25 25 C 1.52996 * 109.47240 * 124.99538 * 24 23 22 26 26 C 1.52999 * 117.50104 * 243.62162 * 25 24 23 27 27 C 1.53004 * 60.00215 * 252.51324 * 26 25 24 28 28 N 1.40217 * 106.80923 * 359.97438 * 23 22 21 29 29 N 1.28761 * 108.36572 * 359.97438 * 28 23 22 30 30 H 1.08997 * 109.46992 * 300.00348 * 1 2 3 31 31 H 1.09004 * 109.46576 * 59.99949 * 1 2 3 32 32 H 1.08992 * 109.47217 * 180.02562 * 1 2 3 33 33 H 1.08997 * 110.36861 * 86.08140 * 5 3 2 34 34 H 1.08997 * 110.46474 * 323.80215 * 5 3 2 35 35 H 0.97000 * 120.00482 * 179.97438 * 10 9 7 36 36 H 1.08997 * 109.88292 * 239.52631 * 15 6 5 37 37 H 1.08993 * 109.88370 * 118.35452 * 15 6 5 38 38 H 0.96997 * 119.99690 * 93.54892 * 18 16 15 39 39 H 1.08001 * 126.57617 * 0.26547 * 22 21 19 40 40 H 1.08996 * 109.46773 * 245.00111 * 24 23 22 41 41 H 1.09001 * 109.46808 * 4.99275 * 24 23 22 42 42 H 1.09004 * 115.55156 * 29.33330 * 25 24 23 43 43 H 1.09007 * 117.49426 * 0.02562 * 26 25 24 44 44 H 1.08995 * 117.49762 * 145.02327 * 26 25 24 45 45 H 1.08994 * 117.49856 * 252.50950 * 27 26 25 46 46 H 1.09004 * 117.49807 * 107.48489 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3333 2.0328 0.4478 5 6 2.4155 1.7328 -1.4328 6 7 3.4910 2.7228 -1.2414 7 6 3.8432 3.7011 -2.1326 8 1 4.5329 4.4777 -1.8372 9 6 3.3136 3.6942 -3.4157 10 7 2.6265 2.6544 -3.8386 11 14 3.5761 5.1611 -4.5422 12 1 4.7679 4.9229 -5.3953 13 1 2.3799 5.3445 -5.4029 14 1 3.7890 6.3819 -3.7239 15 6 4.1234 2.4854 0.0645 16 6 3.3824 1.3033 0.7242 17 1 3.9135 0.3680 0.5471 18 7 3.2108 1.5358 2.1605 19 6 4.1855 1.1823 3.0215 20 8 5.2076 0.6708 2.6062 21 6 4.0125 1.4158 4.4678 22 6 4.9171 1.1003 5.4414 23 7 4.3711 1.4712 6.6169 24 6 4.9757 1.3302 7.9439 25 6 5.0056 2.6932 8.6382 26 6 6.3761 3.2898 8.9648 27 6 5.4951 2.7374 10.0872 28 7 3.1138 2.0190 6.3252 29 7 2.9362 1.9710 5.0508 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.5687 2.1873 -1.9469 34 1 2.7847 0.8757 -1.9959 35 1 2.2562 2.6497 -4.7351 36 1 4.0316 3.3748 0.6879 37 1 5.1748 2.2335 -0.0731 38 1 2.3956 1.9441 2.4917 39 1 5.8842 0.6417 5.2972 40 1 4.3869 0.6321 8.5390 41 1 5.9929 0.9522 7.8414 42 1 4.2108 3.3831 8.3542 43 1 7.2565 2.7112 8.6847 44 1 6.4833 4.3722 8.8956 45 1 5.0227 3.4565 10.7563 46 1 5.7958 1.7953 10.5457 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082279333.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:13 Heat of formation + Delta-G solvation = 79.052565 kcal Electronic energy + Delta-G solvation = -28482.577624 eV Core-core repulsion = 24411.844618 eV Total energy + Delta-G solvation = -4070.733006 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.36801 -39.49872 -38.27894 -37.92755 -35.86902 -34.49478 -33.89944 -31.81187 -31.04207 -28.90027 -28.28265 -27.05568 -26.03974 -24.51798 -23.40906 -22.99144 -22.73797 -21.48397 -20.66510 -20.38560 -19.73682 -18.38097 -17.12310 -16.62208 -16.46582 -16.32069 -15.60988 -15.45930 -15.06485 -14.79957 -14.75443 -14.42560 -14.32969 -14.16107 -13.99336 -13.65461 -13.16683 -12.82974 -12.58387 -12.21472 -12.16727 -12.11631 -11.95708 -11.49026 -11.41399 -11.19352 -11.14071 -10.93837 -10.84835 -10.81551 -10.77298 -10.47620 -10.16347 -10.03145 -9.89447 -9.78999 -9.43918 -9.06574 -8.63010 -8.59490 -6.82008 -5.73997 -3.08192 0.95465 1.65978 1.72999 3.10592 3.28033 3.40126 3.41447 3.46914 3.49209 3.74170 4.08504 4.14282 4.15030 4.30922 4.36324 4.52304 4.60233 4.64429 4.77491 4.83927 5.04814 5.16813 5.22638 5.29766 5.44931 5.50097 5.53479 5.53585 5.62400 5.65222 5.71767 5.75169 5.86239 5.97188 6.11218 6.11923 6.23495 6.51482 6.75003 6.92596 7.29340 7.47700 7.61529 7.74674 7.82915 7.87624 8.22700 8.37263 9.17677 9.79260 10.44824 11.38554 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016217 B = 0.002372 C = 0.002171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.205239 B =11799.376956 C =12892.407056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.379 6.379 3 C 0.053 3.947 4 H 0.069 0.931 5 C 0.163 3.837 6 N -0.599 5.599 7 C -0.229 4.229 8 H 0.079 0.921 9 C -0.007 4.007 10 N -0.917 5.917 11 Si 0.912 3.088 12 H -0.288 1.288 13 H -0.290 1.290 14 H -0.280 1.280 15 C 0.130 3.870 16 C 0.137 3.863 17 H 0.104 0.896 18 N -0.699 5.699 19 C 0.603 3.397 20 O -0.537 6.537 21 C -0.094 4.094 22 C 0.093 3.907 23 N -0.360 5.360 24 C 0.155 3.845 25 C -0.177 4.177 26 C -0.176 4.176 27 C -0.165 4.165 28 N -0.065 5.065 29 N -0.204 5.204 30 H 0.035 0.965 31 H 0.045 0.955 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.042 0.958 35 H 0.254 0.746 36 H 0.031 0.969 37 H 0.036 0.964 38 H 0.405 0.595 39 H 0.205 0.795 40 H 0.103 0.897 41 H 0.106 0.894 42 H 0.121 0.879 43 H 0.099 0.901 44 H 0.099 0.901 45 H 0.101 0.899 46 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.361 -3.998 26.698 27.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.297 6.297 3 C -0.006 4.006 4 H 0.087 0.913 5 C 0.038 3.962 6 N -0.327 5.327 7 C -0.357 4.357 8 H 0.096 0.904 9 C -0.203 4.203 10 N -0.564 5.564 11 Si 0.742 3.258 12 H -0.215 1.215 13 H -0.216 1.216 14 H -0.206 1.206 15 C 0.003 3.997 16 C 0.033 3.967 17 H 0.122 0.878 18 N -0.348 5.348 19 C 0.387 3.613 20 O -0.414 6.414 21 C -0.234 4.234 22 C -0.064 4.064 23 N -0.145 5.145 24 C 0.034 3.966 25 C -0.196 4.196 26 C -0.213 4.213 27 C -0.203 4.203 28 N -0.045 5.045 29 N -0.078 5.078 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.097 0.903 33 H 0.093 0.907 34 H 0.060 0.940 35 H 0.064 0.936 36 H 0.049 0.951 37 H 0.054 0.946 38 H 0.240 0.760 39 H 0.221 0.779 40 H 0.121 0.879 41 H 0.124 0.876 42 H 0.139 0.861 43 H 0.117 0.883 44 H 0.118 0.882 45 H 0.120 0.880 46 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 1.909 -3.859 26.784 27.128 hybrid contribution 0.480 0.696 -0.701 1.098 sum 2.389 -3.163 26.083 26.382 Atomic orbital electron populations 1.22713 0.81623 1.02001 0.99889 1.87858 1.19188 1.27580 1.95054 1.24003 0.92748 0.83979 0.99879 0.91315 1.21739 0.92788 0.92674 0.89045 1.44290 1.36340 1.36086 1.16018 1.19024 1.24090 1.01432 0.91131 0.90366 1.24849 1.00966 0.97871 0.96657 1.69944 1.40412 1.28171 1.17889 0.86105 0.77193 0.81932 0.80534 1.21540 1.21617 1.20579 1.21631 0.95901 0.93944 0.88227 1.22201 0.96756 1.00389 0.77370 0.87769 1.45797 1.20031 1.61946 1.07045 1.16729 0.83585 0.78217 0.82802 1.90821 1.28024 1.44450 1.78062 1.21562 0.93781 1.11736 0.96309 1.23379 1.00544 0.98134 0.84306 1.50435 1.14583 1.42059 1.07439 1.21584 0.99064 0.97525 0.78435 1.22547 1.00149 0.97814 0.99067 1.23153 0.93517 1.01770 1.02823 1.22995 1.03245 1.03507 0.90517 1.81958 0.96356 1.18314 1.07877 1.74652 1.21206 1.11180 1.00744 0.94661 0.93676 0.90259 0.90722 0.94030 0.93607 0.95145 0.94638 0.75998 0.77856 0.87906 0.87580 0.86116 0.88251 0.88245 0.88034 0.88208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.85 101.05 1.10 1.60 16 2 O -0.38 -7.07 10.51 -35.23 -0.37 -7.44 16 3 C 0.05 1.05 3.15 -24.58 -0.08 0.97 16 4 H 0.07 1.25 7.69 -51.94 -0.40 0.85 16 5 C 0.16 4.02 5.16 -2.53 -0.01 4.00 16 6 N -0.60 -15.65 3.39 -170.07 -0.58 -16.22 16 7 C -0.23 -6.45 10.24 -15.06 -0.15 -6.60 16 8 H 0.08 2.14 7.85 -52.49 -0.41 1.73 16 9 C -0.01 -0.19 5.40 -17.43 -0.09 -0.28 16 10 N -0.92 -27.00 10.68 55.49 0.59 -26.41 16 11 Si 0.91 22.16 29.56 -169.99 -5.03 17.13 16 12 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 13 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 14 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 15 C 0.13 2.90 6.99 -3.06 -0.02 2.87 16 16 C 0.14 2.67 2.97 -66.09 -0.20 2.48 16 17 H 0.10 2.18 7.69 -51.93 -0.40 1.78 16 18 N -0.70 -11.58 5.13 -53.07 -0.27 -11.85 16 19 C 0.60 9.89 7.81 -12.48 -0.10 9.80 16 20 O -0.54 -10.13 16.59 5.27 0.09 -10.05 16 21 C -0.09 -1.29 6.99 -83.55 -0.58 -1.88 16 22 C 0.09 0.94 11.27 -16.84 -0.19 0.75 16 23 N -0.36 -3.29 3.69 -61.06 -0.23 -3.52 16 24 C 0.15 0.76 6.82 -4.04 -0.03 0.74 16 25 C -0.18 -0.95 5.93 -90.62 -0.54 -1.49 16 26 C -0.18 -0.79 10.18 -26.73 -0.27 -1.06 16 27 C -0.17 -0.61 10.25 -26.73 -0.27 -0.88 16 28 N -0.06 -0.80 13.48 60.35 0.81 0.01 16 29 N -0.20 -2.86 12.04 32.85 0.40 -2.47 16 30 H 0.03 0.45 8.12 -51.93 -0.42 0.03 16 31 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.07 1.99 6.93 -51.93 -0.36 1.63 16 34 H 0.04 1.13 8.07 -51.93 -0.42 0.72 16 35 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 36 H 0.03 0.67 8.03 -51.93 -0.42 0.25 16 37 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.40 6.08 8.20 -40.82 -0.33 5.75 16 39 H 0.20 1.43 8.06 -52.49 -0.42 1.01 16 40 H 0.10 0.38 8.14 -51.93 -0.42 -0.05 16 41 H 0.11 0.25 7.82 -51.93 -0.41 -0.16 16 42 H 0.12 0.90 7.94 -51.93 -0.41 0.49 16 43 H 0.10 0.35 8.03 -51.93 -0.42 -0.07 16 44 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.10 0.36 8.14 -51.93 -0.42 -0.07 16 46 H 0.10 0.23 8.14 -51.93 -0.42 -0.19 16 LS Contribution 390.15 15.07 5.88 5.88 Total: -1.00 -34.49 390.15 -7.06 -41.55 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -6.92 Total: 2.36 kcal Atomic # 6 Polarization: 12.46 SS G_CDS: -1.44 Total: 11.01 kcal Atomic # 7 Polarization: -61.18 SS G_CDS: 0.73 Total: -60.46 kcal Atomic # 8 Polarization: -17.20 SS G_CDS: -0.28 Total: -17.48 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.03 Total: 17.13 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.49 -7.06 -41.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082279333.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.603 kcal (2) G-P(sol) polarization free energy of solvation -34.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.550 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds