Wall clock time and date at job start Tue Mar 31 2020 18:31:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42904 * 114.00076 * 2 1 4 4 H 1.08989 * 110.91739 * 26.09675 * 3 2 1 5 5 C 1.54909 * 111.00063 * 262.19362 * 3 2 1 6 6 N 1.47431 * 104.83257 * 204.91664 * 5 3 2 7 7 C 1.36935 * 125.65255 * 204.09755 * 6 5 3 8 8 H 1.07993 * 120.00360 * 169.98533 * 7 6 5 9 9 C 1.38811 * 119.99611 * 349.97822 * 7 6 5 10 10 N 1.31615 * 120.00306 * 350.42648 * 9 7 6 11 11 Si 1.86804 * 119.99748 * 170.42151 * 9 7 6 12 12 H 1.48495 * 109.46892 * 94.14810 * 11 9 7 13 13 H 1.48507 * 109.46772 * 214.14326 * 11 9 7 14 14 H 1.48496 * 109.47490 * 334.14340 * 11 9 7 15 15 C 1.47023 * 108.70209 * 24.12944 * 6 5 3 16 16 C 1.54328 * 107.26851 * 358.94022 * 15 6 5 17 17 H 1.09005 * 110.72130 * 96.34860 * 16 15 6 18 18 N 1.46503 * 110.71928 * 219.44211 * 16 15 6 19 19 C 1.34776 * 120.00188 * 273.54761 * 18 16 15 20 20 O 1.21605 * 119.99870 * 0.02562 * 19 18 16 21 21 C 1.47515 * 120.00318 * 180.02562 * 19 18 16 22 22 C 1.36595 * 125.77579 * 179.71813 * 21 19 18 23 23 N 1.34812 * 106.84565 * 180.26287 * 22 21 19 24 24 C 1.46502 * 126.59981 * 180.02562 * 23 22 21 25 25 C 1.52996 * 109.47240 * 124.99538 * 24 23 22 26 26 C 1.52999 * 117.50104 * 243.62162 * 25 24 23 27 27 C 1.53004 * 60.00215 * 252.51324 * 26 25 24 28 28 N 1.40217 * 106.80923 * 359.97438 * 23 22 21 29 29 N 1.28761 * 108.36572 * 359.97438 * 28 23 22 30 30 H 1.08997 * 109.46992 * 300.00348 * 1 2 3 31 31 H 1.09004 * 109.46576 * 59.99949 * 1 2 3 32 32 H 1.08992 * 109.47217 * 180.02562 * 1 2 3 33 33 H 1.08997 * 110.36861 * 86.08140 * 5 3 2 34 34 H 1.08997 * 110.46474 * 323.80215 * 5 3 2 35 35 H 0.97000 * 120.00482 * 179.97438 * 10 9 7 36 36 H 1.08997 * 109.88292 * 239.52631 * 15 6 5 37 37 H 1.08993 * 109.88370 * 118.35452 * 15 6 5 38 38 H 0.96997 * 119.99690 * 93.54892 * 18 16 15 39 39 H 1.08001 * 126.57617 * 0.26547 * 22 21 19 40 40 H 1.08996 * 109.46773 * 245.00111 * 24 23 22 41 41 H 1.09001 * 109.46808 * 4.99275 * 24 23 22 42 42 H 1.09004 * 115.55156 * 29.33330 * 25 24 23 43 43 H 1.09007 * 117.49426 * 0.02562 * 26 25 24 44 44 H 1.08995 * 117.49762 * 145.02327 * 26 25 24 45 45 H 1.08994 * 117.49856 * 252.50950 * 27 26 25 46 46 H 1.09004 * 117.49807 * 107.48489 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3333 2.0328 0.4478 5 6 2.4155 1.7328 -1.4328 6 7 3.4910 2.7228 -1.2414 7 6 3.8432 3.7011 -2.1326 8 1 4.5329 4.4777 -1.8372 9 6 3.3136 3.6942 -3.4157 10 7 2.6265 2.6544 -3.8386 11 14 3.5761 5.1611 -4.5422 12 1 4.7679 4.9229 -5.3953 13 1 2.3799 5.3445 -5.4029 14 1 3.7890 6.3819 -3.7239 15 6 4.1234 2.4854 0.0645 16 6 3.3824 1.3033 0.7242 17 1 3.9135 0.3680 0.5471 18 7 3.2108 1.5358 2.1605 19 6 4.1855 1.1823 3.0215 20 8 5.2076 0.6708 2.6062 21 6 4.0125 1.4158 4.4678 22 6 4.9171 1.1003 5.4414 23 7 4.3711 1.4712 6.6169 24 6 4.9757 1.3302 7.9439 25 6 5.0056 2.6932 8.6382 26 6 6.3761 3.2898 8.9648 27 6 5.4951 2.7374 10.0872 28 7 3.1138 2.0190 6.3252 29 7 2.9362 1.9710 5.0508 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.5687 2.1873 -1.9469 34 1 2.7847 0.8757 -1.9959 35 1 2.2562 2.6497 -4.7351 36 1 4.0316 3.3748 0.6879 37 1 5.1748 2.2335 -0.0731 38 1 2.3956 1.9441 2.4917 39 1 5.8842 0.6417 5.2972 40 1 4.3869 0.6321 8.5390 41 1 5.9929 0.9522 7.8414 42 1 4.2108 3.3831 8.3542 43 1 7.2565 2.7112 8.6847 44 1 6.4833 4.3722 8.8956 45 1 5.0227 3.4565 10.7563 46 1 5.7958 1.7953 10.5457 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001082279333.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:13 Heat of formation + Delta-G solvation = 53.741869 kcal Electronic energy + Delta-G solvation = -28483.675178 eV Core-core repulsion = 24411.844618 eV Total energy + Delta-G solvation = -4071.830561 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.25135 -40.94355 -39.50610 -38.61510 -37.51905 -35.69630 -35.06737 -33.68405 -32.07321 -30.57870 -29.25029 -28.54572 -27.49861 -26.22693 -24.61352 -23.57906 -23.25393 -22.52390 -22.19785 -21.72225 -21.01470 -19.45199 -18.84807 -18.00387 -17.55598 -17.23005 -17.10441 -16.67545 -16.20365 -15.91765 -15.83760 -15.76306 -15.45469 -15.31641 -15.09193 -14.94253 -14.52390 -14.37147 -13.93129 -13.81818 -13.34481 -13.10768 -12.99567 -12.83124 -12.73207 -12.62736 -12.41849 -12.35137 -12.25571 -12.06357 -11.87769 -11.67113 -11.62972 -11.36446 -11.26988 -10.96656 -10.75912 -10.59253 -10.39461 -10.08504 -8.93780 -7.89702 -5.27859 0.14117 0.59268 1.06104 1.47360 1.48843 1.58898 1.98249 2.20521 2.45744 2.72532 2.79060 3.14016 3.24040 3.30528 3.55831 3.69189 3.80953 3.87812 3.92692 3.95146 3.97256 4.03341 4.05934 4.15510 4.35099 4.45236 4.45599 4.53976 4.60126 4.64463 4.76724 4.79281 4.86323 4.87230 4.93844 5.00134 5.13939 5.23377 5.28135 5.37196 5.44042 5.46426 5.61410 6.12125 6.28039 6.37144 6.88258 7.02488 7.09562 7.68106 8.33551 9.21491 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016217 B = 0.002372 C = 0.002171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.205239 B =11799.376956 C =12892.407056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.393 6.393 3 C 0.075 3.925 4 H 0.089 0.911 5 C 0.172 3.828 6 N -0.618 5.618 7 C -0.248 4.248 8 H 0.082 0.918 9 C -0.060 4.060 10 N -0.946 5.946 11 Si 0.982 3.018 12 H -0.286 1.286 13 H -0.290 1.290 14 H -0.268 1.268 15 C 0.132 3.868 16 C 0.155 3.845 17 H 0.089 0.911 18 N -0.693 5.693 19 C 0.606 3.394 20 O -0.566 6.566 21 C -0.122 4.122 22 C 0.115 3.885 23 N -0.344 5.344 24 C 0.147 3.853 25 C -0.191 4.191 26 C -0.179 4.179 27 C -0.151 4.151 28 N -0.083 5.083 29 N -0.225 5.225 30 H 0.058 0.942 31 H 0.037 0.963 32 H 0.105 0.895 33 H 0.048 0.952 34 H 0.004 0.996 35 H 0.251 0.749 36 H 0.039 0.961 37 H 0.022 0.978 38 H 0.414 0.586 39 H 0.238 0.762 40 H 0.121 0.879 41 H 0.141 0.859 42 H 0.094 0.906 43 H 0.114 0.886 44 H 0.089 0.911 45 H 0.100 0.900 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.952 -4.113 29.338 29.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.311 6.311 3 C 0.016 3.984 4 H 0.107 0.893 5 C 0.046 3.954 6 N -0.346 5.346 7 C -0.376 4.376 8 H 0.100 0.900 9 C -0.254 4.254 10 N -0.594 5.594 11 Si 0.809 3.191 12 H -0.213 1.213 13 H -0.216 1.216 14 H -0.192 1.192 15 C 0.005 3.995 16 C 0.049 3.951 17 H 0.107 0.893 18 N -0.343 5.343 19 C 0.392 3.608 20 O -0.444 6.444 21 C -0.262 4.262 22 C -0.043 4.043 23 N -0.129 5.129 24 C 0.028 3.972 25 C -0.210 4.210 26 C -0.216 4.216 27 C -0.189 4.189 28 N -0.063 5.063 29 N -0.098 5.098 30 H 0.077 0.923 31 H 0.056 0.944 32 H 0.123 0.877 33 H 0.066 0.934 34 H 0.022 0.978 35 H 0.060 0.940 36 H 0.057 0.943 37 H 0.040 0.960 38 H 0.251 0.749 39 H 0.254 0.746 40 H 0.139 0.861 41 H 0.159 0.841 42 H 0.112 0.888 43 H 0.132 0.868 44 H 0.108 0.892 45 H 0.118 0.882 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 2.481 -3.964 29.500 29.868 hybrid contribution 0.338 0.698 -1.391 1.593 sum 2.819 -3.266 28.109 28.438 Atomic orbital electron populations 1.22997 0.79306 1.04025 1.00644 1.87846 1.21722 1.26614 1.94927 1.23591 0.93325 0.85106 0.96411 0.89334 1.21479 0.91366 0.90812 0.91741 1.44551 1.37209 1.35900 1.16918 1.19396 1.24189 1.02129 0.91921 0.90049 1.25721 1.00953 1.00575 0.98155 1.70147 1.41304 1.29964 1.18004 0.85029 0.76807 0.78894 0.78327 1.21329 1.21618 1.19247 1.21685 0.95299 0.95425 0.87071 1.21716 0.95959 0.98315 0.79061 0.89324 1.45611 1.20777 1.62315 1.05647 1.17033 0.82748 0.77142 0.83883 1.90801 1.29014 1.45708 1.78876 1.21285 0.95367 1.14360 0.95194 1.23835 1.00716 0.96208 0.83589 1.50718 1.13365 1.40124 1.08669 1.22087 1.01017 0.97671 0.76448 1.22439 0.99988 0.97773 1.00786 1.23241 0.93593 1.01547 1.03249 1.23090 1.01926 1.04250 0.89604 1.81883 0.98149 1.19095 1.07186 1.74623 1.21878 1.11863 1.01465 0.92345 0.94413 0.87710 0.93350 0.97780 0.94001 0.94291 0.96039 0.74910 0.74562 0.86139 0.84074 0.88792 0.86751 0.89215 0.88186 0.86172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.73 10.85 113.37 1.23 1.96 16 2 O -0.39 -14.53 10.51 -148.98 -1.57 -16.10 16 3 C 0.08 2.98 3.15 31.98 0.10 3.08 16 4 H 0.09 3.16 7.69 -2.39 -0.02 3.14 16 5 C 0.17 8.80 5.16 86.85 0.45 9.25 16 6 N -0.62 -33.22 3.39 -691.99 -2.35 -35.57 16 7 C -0.25 -14.26 10.24 84.03 0.86 -13.40 16 8 H 0.08 4.51 7.85 -2.91 -0.02 4.48 16 9 C -0.06 -3.48 5.40 84.86 0.46 -3.02 16 10 N -0.95 -57.44 10.68 21.65 0.23 -57.21 16 11 Si 0.98 46.11 29.56 68.60 2.03 48.14 16 12 H -0.29 -13.29 7.11 99.48 0.71 -12.59 16 13 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 14 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 15 C 0.13 5.99 6.99 86.73 0.61 6.60 16 16 C 0.16 6.11 2.97 46.18 0.14 6.25 16 17 H 0.09 3.80 7.69 -2.38 -0.02 3.78 16 18 N -0.69 -22.70 5.13 -440.07 -2.26 -24.95 16 19 C 0.61 19.53 7.81 86.69 0.68 20.21 16 20 O -0.57 -21.13 16.59 -4.05 -0.07 -21.20 16 21 C -0.12 -3.19 6.99 40.81 0.29 -2.91 16 22 C 0.11 2.03 11.27 83.85 0.95 2.97 16 23 N -0.34 -5.44 3.69 -347.11 -1.28 -6.72 16 24 C 0.15 0.95 6.82 86.38 0.59 1.54 16 25 C -0.19 -1.67 5.93 -10.79 -0.06 -1.73 16 26 C -0.18 -1.21 10.18 30.60 0.31 -0.89 16 27 C -0.15 -0.72 10.25 30.60 0.31 -0.41 16 28 N -0.08 -1.95 13.48 37.02 0.50 -1.45 16 29 N -0.22 -6.11 12.04 -50.00 -0.60 -6.71 16 30 H 0.06 1.37 8.12 -2.39 -0.02 1.35 16 31 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 33 H 0.05 2.69 6.93 -2.39 -0.02 2.68 16 34 H 0.00 0.24 8.07 -2.39 -0.02 0.22 16 35 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 36 H 0.04 1.71 8.03 -2.39 -0.02 1.69 16 37 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.41 12.10 8.20 -92.71 -0.76 11.34 16 39 H 0.24 2.44 8.06 -2.91 -0.02 2.41 16 40 H 0.12 0.43 8.14 -2.39 -0.02 0.41 16 41 H 0.14 -0.02 7.82 -2.39 -0.02 -0.04 16 42 H 0.09 1.36 7.94 -2.39 -0.02 1.34 16 43 H 0.11 0.42 8.03 -2.38 -0.02 0.40 16 44 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 45 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 46 H 0.12 0.10 8.14 -2.38 -0.02 0.08 16 Total: -1.00 -77.74 390.15 1.77 -75.97 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: 0.24 Total: 16.31 kcal Atomic # 6 Polarization: 22.60 SS G_CDS: 6.90 Total: 29.50 kcal Atomic # 7 Polarization: -126.86 SS G_CDS: -5.76 Total: -132.62 kcal Atomic # 8 Polarization: -35.66 SS G_CDS: -1.63 Total: -37.30 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.14 kcal Total: -77.74 1.77 -75.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082279333.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.711 kcal (2) G-P(sol) polarization free energy of solvation -77.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds