Wall clock time and date at job start Tue Mar 31 2020 18:31:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42904 * 113.99668 * 2 1 4 4 H 1.08996 * 110.64120 * 26.86327 * 3 2 1 5 5 C 1.54321 * 110.72134 * 263.52510 * 3 2 1 6 6 N 1.47024 * 107.27199 * 219.44454 * 5 3 2 7 7 C 1.36935 * 125.64782 * 178.97695 * 6 5 3 8 8 H 1.08000 * 120.00007 * 179.97438 * 7 6 5 9 9 C 1.38818 * 120.00120 * 359.97236 * 7 6 5 10 10 N 1.31620 * 119.99787 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 120.00041 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.46730 * 90.00344 * 11 9 7 13 13 H 1.48500 * 109.47035 * 209.99960 * 11 9 7 14 14 H 1.48501 * 109.46945 * 330.00344 * 11 9 7 15 15 C 1.47462 * 108.72196 * 358.97738 * 6 5 3 16 16 C 1.54909 * 104.81115 * 24.06807 * 15 6 5 17 17 H 1.09000 * 111.00627 * 81.13997 * 16 15 6 18 18 N 1.46505 * 111.00330 * 204.95042 * 16 15 6 19 19 C 1.34779 * 119.99808 * 270.41997 * 18 16 15 20 20 O 1.21276 * 120.00389 * 359.97438 * 19 18 16 21 21 C 1.50703 * 119.99748 * 180.02562 * 19 18 16 22 22 H 1.08995 * 109.45178 * 300.04514 * 21 19 18 23 23 C 1.53139 * 109.45232 * 180.10879 * 21 19 18 24 24 C 1.53459 * 109.30456 * 170.52983 * 23 21 19 25 25 C 1.50804 * 108.12973 * 48.72134 * 24 23 21 26 26 N 1.29838 * 128.52521 * 164.07285 * 25 24 23 27 27 N 1.28910 * 109.48338 * 180.13303 * 26 25 24 28 28 C 1.30844 * 109.73435 * 359.97133 * 27 26 25 29 29 N 1.34696 * 107.07196 * 359.96770 * 28 27 26 30 30 C 1.46248 * 128.84274 * 180.12988 * 29 28 27 31 31 H 1.09008 * 109.47038 * 180.02562 * 1 2 3 32 32 H 1.09008 * 109.46795 * 299.99350 * 1 2 3 33 33 H 1.08995 * 109.47775 * 59.99543 * 1 2 3 34 34 H 1.08998 * 109.88565 * 338.86583 * 5 3 2 35 35 H 1.09003 * 109.87774 * 99.87199 * 5 3 2 36 36 H 0.97004 * 120.00070 * 179.97438 * 10 9 7 37 37 H 1.08998 * 110.34938 * 265.25152 * 15 6 5 38 38 H 1.09000 * 110.40841 * 142.91786 * 15 6 5 39 39 H 0.97004 * 120.00218 * 90.42099 * 18 16 15 40 40 H 1.09003 * 109.50059 * 290.48425 * 23 21 19 41 41 H 1.09007 * 109.49483 * 50.54937 * 23 21 19 42 42 H 1.08998 * 109.73348 * 168.37605 * 24 23 21 43 43 H 1.09007 * 109.73346 * 289.01726 * 24 23 21 44 44 H 1.08003 * 126.45891 * 179.97438 * 28 27 26 45 45 H 1.09004 * 109.59978 * 282.68245 * 30 29 28 46 46 H 1.09004 * 109.59498 * 43.13848 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3352 2.0266 0.4609 5 6 2.3809 1.7382 -1.4342 6 7 3.6684 2.4441 -1.3581 7 6 4.3538 2.9706 -2.4202 8 1 5.2960 3.4734 -2.2592 9 6 3.8376 2.8582 -3.7040 10 7 2.6891 2.2460 -3.9002 11 14 4.7723 3.5771 -5.1528 12 1 5.6968 2.5532 -5.7025 13 1 3.8106 3.9920 -6.2055 14 1 5.5524 4.7575 -4.7019 15 6 4.0997 2.4914 0.0512 16 6 3.3816 1.2958 0.7255 17 1 3.9155 0.3640 0.5394 18 7 3.2168 1.5252 2.1631 19 6 4.1770 1.1308 3.0228 20 8 5.1771 0.5856 2.6064 21 6 4.0072 1.3662 4.5016 22 1 3.9069 2.4350 4.6898 23 6 5.2326 0.8302 5.2473 24 6 5.1702 1.2781 6.7137 25 6 3.7920 0.9672 7.2411 26 7 3.3911 0.9145 8.4749 27 7 2.1381 0.6132 8.5074 28 6 1.6884 0.4619 7.2880 29 7 2.7232 0.6830 6.4546 30 6 2.7489 0.6408 4.9930 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 -0.3634 0.5139 -0.8899 34 1 2.4767 0.8603 -2.0732 35 1 1.6137 2.4032 -1.8307 36 1 2.3282 2.1677 -4.7971 37 1 3.7887 3.4293 0.5115 38 1 5.1810 2.3735 0.1220 39 1 2.4167 1.9608 2.4962 40 1 5.2402 -0.2588 5.1995 41 1 6.1393 1.2209 4.7853 42 1 5.9172 0.7383 7.2956 43 1 5.3568 2.3501 6.7794 44 1 0.6780 0.2076 7.0036 45 1 2.7702 -0.3961 4.6574 46 1 1.8628 1.1373 4.5972 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082382446.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:26 Heat of formation + Delta-G solvation = 32.262362 kcal Electronic energy + Delta-G solvation = -29424.006305 eV Core-core repulsion = 25351.244323 eV Total energy + Delta-G solvation = -4072.761982 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.60476 -40.33125 -38.53643 -37.04666 -36.02931 -34.39245 -33.90824 -32.11711 -31.29398 -29.56811 -28.83229 -27.28566 -26.24670 -25.47779 -24.45220 -23.49246 -22.59705 -21.22969 -20.71187 -20.21518 -19.75710 -17.93799 -17.45969 -17.02975 -16.68337 -16.39788 -15.84993 -15.70386 -15.08751 -14.95534 -14.66162 -14.61849 -14.50120 -14.33543 -14.15739 -13.87813 -13.33830 -13.01011 -12.72960 -12.36459 -12.28668 -12.01474 -11.90399 -11.72818 -11.65416 -11.45127 -11.36020 -11.11784 -10.88041 -10.87056 -10.65599 -10.49847 -10.25893 -10.13681 -10.00965 -9.88777 -9.47351 -9.30262 -8.94558 -8.69729 -6.99077 -5.82071 -3.17539 1.50994 2.01675 2.43886 2.59595 2.92959 3.35184 3.40349 3.41824 3.71230 3.94576 3.98264 4.03370 4.08737 4.35390 4.43475 4.56606 4.59620 4.72226 4.83223 4.97244 5.03412 5.15424 5.22288 5.33058 5.38039 5.43252 5.50386 5.55086 5.57997 5.59523 5.70271 5.71606 5.79170 5.84898 5.89277 5.99929 6.31769 6.48242 6.49510 6.66332 7.11935 7.34809 7.39938 7.60476 7.74696 8.05299 8.12088 8.43230 9.08507 9.68569 10.30515 11.29357 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.020701 B = 0.002602 C = 0.002377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.265598 B =10757.302223 C =11776.471198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.378 6.378 3 C 0.056 3.944 4 H 0.063 0.937 5 C 0.165 3.835 6 N -0.600 5.600 7 C -0.231 4.231 8 H 0.081 0.919 9 C -0.006 4.006 10 N -0.922 5.922 11 Si 0.915 3.085 12 H -0.287 1.287 13 H -0.290 1.290 14 H -0.280 1.280 15 C 0.131 3.869 16 C 0.131 3.869 17 H 0.107 0.893 18 N -0.713 5.713 19 C 0.522 3.478 20 O -0.522 6.522 21 C -0.123 4.123 22 H 0.112 0.888 23 C -0.108 4.108 24 C -0.035 4.035 25 C 0.180 3.820 26 N -0.294 5.294 27 N -0.302 5.302 28 C 0.155 3.845 29 N -0.472 5.472 30 C 0.114 3.886 31 H 0.080 0.920 32 H 0.032 0.968 33 H 0.046 0.954 34 H 0.063 0.937 35 H 0.049 0.951 36 H 0.254 0.746 37 H 0.023 0.977 38 H 0.051 0.949 39 H 0.395 0.605 40 H 0.079 0.921 41 H 0.100 0.900 42 H 0.105 0.895 43 H 0.098 0.902 44 H 0.220 0.780 45 H 0.100 0.900 46 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.931 -2.441 17.565 18.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.296 6.296 3 C -0.003 4.003 4 H 0.081 0.919 5 C 0.039 3.961 6 N -0.328 5.328 7 C -0.359 4.359 8 H 0.099 0.901 9 C -0.202 4.202 10 N -0.569 5.569 11 Si 0.745 3.255 12 H -0.214 1.214 13 H -0.216 1.216 14 H -0.206 1.206 15 C 0.004 3.996 16 C 0.026 3.974 17 H 0.125 0.875 18 N -0.364 5.364 19 C 0.306 3.694 20 O -0.396 6.396 21 C -0.145 4.145 22 H 0.130 0.870 23 C -0.146 4.146 24 C -0.074 4.074 25 C -0.088 4.088 26 N -0.133 5.133 27 N -0.141 5.141 28 C -0.133 4.133 29 N -0.163 5.163 30 C -0.009 4.009 31 H 0.098 0.902 32 H 0.051 0.949 33 H 0.065 0.935 34 H 0.081 0.919 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.040 0.960 38 H 0.069 0.931 39 H 0.229 0.771 40 H 0.098 0.902 41 H 0.119 0.881 42 H 0.124 0.876 43 H 0.116 0.884 44 H 0.236 0.764 45 H 0.118 0.882 46 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -3.136 -2.945 18.511 19.004 hybrid contribution -0.605 0.738 -2.173 2.373 sum -3.741 -2.207 16.338 16.905 Atomic orbital electron populations 1.22719 0.81648 1.02133 0.99776 1.87915 1.19129 1.27531 1.95051 1.23849 0.92773 0.84076 0.99611 0.91918 1.21559 0.88290 0.97340 0.88883 1.44257 1.21343 1.66517 1.00649 1.19067 1.02418 1.29720 0.84658 0.90106 1.24827 0.97385 1.00583 0.97452 1.69928 1.19130 1.47153 1.20737 0.86073 0.78642 0.78620 0.82146 1.21422 1.21622 1.20604 1.21821 0.97824 0.93664 0.86331 1.22477 0.96643 1.01235 0.77052 0.87463 1.46016 1.21689 1.61062 1.07608 1.19975 0.83624 0.78824 0.87023 1.90768 1.28568 1.41521 1.78791 1.21716 0.96078 1.02992 0.93716 0.87046 1.21574 0.97798 1.02525 0.92698 1.20305 0.88150 1.03512 0.95474 1.24909 0.92943 1.03324 0.87648 1.74084 1.04605 1.18276 1.16359 1.74500 1.03450 1.17600 1.18564 1.26304 0.95850 1.04508 0.86648 1.46145 1.09600 1.51789 1.08775 1.21964 0.99492 1.03602 0.75863 0.90169 0.94906 0.93545 0.91891 0.93286 0.93584 0.95970 0.93075 0.77089 0.90196 0.88137 0.87636 0.88375 0.76397 0.88211 0.87905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.85 101.05 1.10 1.51 16 2 O -0.38 -6.19 10.43 -35.23 -0.37 -6.56 16 3 C 0.06 0.94 3.09 -24.90 -0.08 0.86 16 4 H 0.06 0.90 7.67 -51.93 -0.40 0.50 16 5 C 0.16 3.76 5.15 -3.06 -0.02 3.74 16 6 N -0.60 -14.63 3.40 -170.04 -0.58 -15.21 16 7 C -0.23 -6.23 10.28 -15.06 -0.15 -6.38 16 8 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 9 C -0.01 -0.17 5.49 -17.43 -0.10 -0.26 16 10 N -0.92 -26.16 10.31 55.49 0.57 -25.59 16 11 Si 0.92 21.56 29.55 -169.99 -5.02 16.53 16 12 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 13 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 14 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 15 C 0.13 2.57 6.93 -2.51 -0.02 2.55 16 16 C 0.13 2.15 3.09 -65.78 -0.20 1.94 16 17 H 0.11 2.06 7.63 -51.93 -0.40 1.66 16 18 N -0.71 -8.09 5.12 -51.73 -0.26 -8.36 16 19 C 0.52 5.90 7.14 -10.98 -0.08 5.82 16 20 O -0.52 -8.21 15.52 5.56 0.09 -8.13 16 21 C -0.12 -0.90 2.54 -91.53 -0.23 -1.13 16 22 H 0.11 0.66 8.12 -51.93 -0.42 0.24 16 23 C -0.11 -0.80 4.68 -26.42 -0.12 -0.93 16 24 C -0.03 -0.24 6.34 -27.59 -0.17 -0.42 16 25 C 0.18 1.78 7.75 -155.30 -1.20 0.58 16 26 N -0.29 -3.83 12.21 32.76 0.40 -3.43 16 27 N -0.30 -3.81 12.23 29.59 0.36 -3.45 16 28 C 0.15 1.33 12.83 -90.40 -1.16 0.18 16 29 N -0.47 -3.84 3.11 -115.51 -0.36 -4.20 16 30 C 0.11 0.68 6.14 -4.01 -0.02 0.66 16 31 H 0.08 0.84 8.14 -51.92 -0.42 0.41 16 32 H 0.03 0.32 8.11 -51.92 -0.42 -0.10 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 1.66 7.30 -51.93 -0.38 1.28 16 35 H 0.05 1.22 7.50 -51.93 -0.39 0.83 16 36 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 37 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.40 3.20 8.18 -40.82 -0.33 2.86 16 40 H 0.08 0.67 8.12 -51.93 -0.42 0.24 16 41 H 0.10 0.80 7.79 -51.93 -0.40 0.39 16 42 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.10 0.56 8.14 -51.92 -0.42 0.14 16 44 H 0.22 0.93 8.06 -52.48 -0.42 0.50 16 45 H 0.10 0.61 8.12 -51.93 -0.42 0.19 16 46 H 0.10 0.38 7.87 -51.93 -0.41 -0.03 16 LS Contribution 374.95 15.07 5.65 5.65 Total: -1.00 -35.50 374.95 -8.89 -44.39 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -6.90 Total: -0.37 kcal Atomic # 6 Polarization: 11.19 SS G_CDS: -2.46 Total: 8.72 kcal Atomic # 7 Polarization: -60.38 SS G_CDS: 0.13 Total: -60.24 kcal Atomic # 8 Polarization: -14.40 SS G_CDS: -0.28 Total: -14.69 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -35.50 -8.89 -44.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082382446.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.654 kcal (2) G-P(sol) polarization free energy of solvation -35.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds