Wall clock time and date at job start Tue Mar 31 2020 18:31:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42904 * 113.99668 * 2 1 4 4 H 1.08996 * 110.64120 * 26.86327 * 3 2 1 5 5 C 1.54321 * 110.72134 * 263.52510 * 3 2 1 6 6 N 1.47024 * 107.27199 * 219.44454 * 5 3 2 7 7 C 1.36935 * 125.64782 * 178.97695 * 6 5 3 8 8 H 1.08000 * 120.00007 * 179.97438 * 7 6 5 9 9 C 1.38818 * 120.00120 * 359.97236 * 7 6 5 10 10 N 1.31620 * 119.99787 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 120.00041 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.46730 * 90.00344 * 11 9 7 13 13 H 1.48500 * 109.47035 * 209.99960 * 11 9 7 14 14 H 1.48501 * 109.46945 * 330.00344 * 11 9 7 15 15 C 1.47462 * 108.72196 * 358.97738 * 6 5 3 16 16 C 1.54909 * 104.81115 * 24.06807 * 15 6 5 17 17 H 1.09000 * 111.00627 * 81.13997 * 16 15 6 18 18 N 1.46505 * 111.00330 * 204.95042 * 16 15 6 19 19 C 1.34779 * 119.99808 * 270.41997 * 18 16 15 20 20 O 1.21276 * 120.00389 * 359.97438 * 19 18 16 21 21 C 1.50703 * 119.99748 * 180.02562 * 19 18 16 22 22 H 1.08995 * 109.45178 * 300.04514 * 21 19 18 23 23 C 1.53139 * 109.45232 * 180.10879 * 21 19 18 24 24 C 1.53459 * 109.30456 * 170.52983 * 23 21 19 25 25 C 1.50804 * 108.12973 * 48.72134 * 24 23 21 26 26 N 1.29838 * 128.52521 * 164.07285 * 25 24 23 27 27 N 1.28910 * 109.48338 * 180.13303 * 26 25 24 28 28 C 1.30844 * 109.73435 * 359.97133 * 27 26 25 29 29 N 1.34696 * 107.07196 * 359.96770 * 28 27 26 30 30 C 1.46248 * 128.84274 * 180.12988 * 29 28 27 31 31 H 1.09008 * 109.47038 * 180.02562 * 1 2 3 32 32 H 1.09008 * 109.46795 * 299.99350 * 1 2 3 33 33 H 1.08995 * 109.47775 * 59.99543 * 1 2 3 34 34 H 1.08998 * 109.88565 * 338.86583 * 5 3 2 35 35 H 1.09003 * 109.87774 * 99.87199 * 5 3 2 36 36 H 0.97004 * 120.00070 * 179.97438 * 10 9 7 37 37 H 1.08998 * 110.34938 * 265.25152 * 15 6 5 38 38 H 1.09000 * 110.40841 * 142.91786 * 15 6 5 39 39 H 0.97004 * 120.00218 * 90.42099 * 18 16 15 40 40 H 1.09003 * 109.50059 * 290.48425 * 23 21 19 41 41 H 1.09007 * 109.49483 * 50.54937 * 23 21 19 42 42 H 1.08998 * 109.73348 * 168.37605 * 24 23 21 43 43 H 1.09007 * 109.73346 * 289.01726 * 24 23 21 44 44 H 1.08003 * 126.45891 * 179.97438 * 28 27 26 45 45 H 1.09004 * 109.59978 * 282.68245 * 30 29 28 46 46 H 1.09004 * 109.59498 * 43.13848 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3352 2.0266 0.4609 5 6 2.3809 1.7382 -1.4342 6 7 3.6684 2.4441 -1.3581 7 6 4.3538 2.9706 -2.4202 8 1 5.2960 3.4734 -2.2592 9 6 3.8376 2.8582 -3.7040 10 7 2.6891 2.2460 -3.9002 11 14 4.7723 3.5771 -5.1528 12 1 5.6968 2.5532 -5.7025 13 1 3.8106 3.9920 -6.2055 14 1 5.5524 4.7575 -4.7019 15 6 4.0997 2.4914 0.0512 16 6 3.3816 1.2958 0.7255 17 1 3.9155 0.3640 0.5394 18 7 3.2168 1.5252 2.1631 19 6 4.1770 1.1308 3.0228 20 8 5.1771 0.5856 2.6064 21 6 4.0072 1.3662 4.5016 22 1 3.9069 2.4350 4.6898 23 6 5.2326 0.8302 5.2473 24 6 5.1702 1.2781 6.7137 25 6 3.7920 0.9672 7.2411 26 7 3.3911 0.9145 8.4749 27 7 2.1381 0.6132 8.5074 28 6 1.6884 0.4619 7.2880 29 7 2.7232 0.6830 6.4546 30 6 2.7489 0.6408 4.9930 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 -0.3634 0.5139 -0.8899 34 1 2.4767 0.8603 -2.0732 35 1 1.6137 2.4032 -1.8307 36 1 2.3282 2.1677 -4.7971 37 1 3.7887 3.4293 0.5115 38 1 5.1810 2.3735 0.1220 39 1 2.4167 1.9608 2.4962 40 1 5.2402 -0.2588 5.1995 41 1 6.1393 1.2209 4.7853 42 1 5.9172 0.7383 7.2956 43 1 5.3568 2.3501 6.7794 44 1 0.6780 0.2076 7.0036 45 1 2.7702 -0.3961 4.6574 46 1 1.8628 1.1373 4.5972 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001082382446.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:25 Heat of formation + Delta-G solvation = 7.319797 kcal Electronic energy + Delta-G solvation = -29425.087896 eV Core-core repulsion = 25351.244323 eV Total energy + Delta-G solvation = -4073.843573 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.28451 -41.34967 -39.83753 -37.84113 -37.43695 -35.70002 -34.59057 -33.75879 -32.20613 -30.61510 -30.07825 -28.77080 -27.50227 -26.38494 -25.76461 -24.34121 -23.27439 -22.46297 -22.10795 -21.56046 -20.48511 -19.18304 -18.41856 -18.24282 -17.69024 -17.28758 -17.18696 -16.62394 -16.46413 -15.86470 -15.78561 -15.66429 -15.33661 -15.21593 -15.14423 -15.00728 -14.73363 -14.44946 -14.01912 -13.60471 -13.36682 -13.10982 -13.02478 -12.95574 -12.75940 -12.65492 -12.55256 -12.29929 -12.25276 -12.07708 -12.03916 -11.86848 -11.62147 -11.36003 -11.10771 -11.05518 -10.77646 -10.56878 -10.19643 -10.12775 -8.96536 -7.88306 -5.25806 0.88603 1.34746 1.45691 1.47693 1.55862 1.61976 1.86471 1.96349 2.46079 2.78179 3.12221 3.30362 3.32525 3.39772 3.53165 3.53730 3.81486 3.88152 3.93266 4.01100 4.06746 4.14155 4.20022 4.29298 4.39691 4.46603 4.50181 4.60624 4.61680 4.67847 4.77720 4.84875 4.91452 4.96163 4.99520 5.00733 5.11817 5.22956 5.33124 5.38074 5.45178 5.67296 5.92890 6.13879 6.33330 6.47701 7.04824 7.18075 7.70420 7.72248 8.31664 9.20967 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.020701 B = 0.002602 C = 0.002377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.265598 B =10757.302223 C =11776.471198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.396 6.396 3 C 0.078 3.922 4 H 0.101 0.899 5 C 0.172 3.828 6 N -0.623 5.623 7 C -0.245 4.245 8 H 0.083 0.917 9 C -0.062 4.062 10 N -0.949 5.949 11 Si 0.978 3.022 12 H -0.289 1.289 13 H -0.292 1.292 14 H -0.267 1.267 15 C 0.130 3.870 16 C 0.152 3.848 17 H 0.076 0.924 18 N -0.697 5.697 19 C 0.527 3.473 20 O -0.568 6.568 21 C -0.110 4.110 22 H 0.137 0.863 23 C -0.104 4.104 24 C -0.028 4.028 25 C 0.177 3.823 26 N -0.339 5.339 27 N -0.353 5.353 28 C 0.170 3.830 29 N -0.469 5.469 30 C 0.115 3.885 31 H 0.099 0.901 32 H 0.070 0.930 33 H 0.031 0.969 34 H 0.015 0.985 35 H 0.020 0.980 36 H 0.248 0.752 37 H 0.045 0.955 38 H 0.036 0.964 39 H 0.418 0.582 40 H 0.068 0.932 41 H 0.095 0.905 42 H 0.110 0.890 43 H 0.115 0.885 44 H 0.261 0.739 45 H 0.101 0.899 46 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.093 -1.643 19.016 19.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.315 6.315 3 C 0.019 3.981 4 H 0.118 0.882 5 C 0.046 3.954 6 N -0.350 5.350 7 C -0.373 4.373 8 H 0.101 0.899 9 C -0.256 4.256 10 N -0.597 5.597 11 Si 0.806 3.194 12 H -0.216 1.216 13 H -0.218 1.218 14 H -0.192 1.192 15 C 0.003 3.997 16 C 0.045 3.955 17 H 0.095 0.905 18 N -0.349 5.349 19 C 0.313 3.687 20 O -0.446 6.446 21 C -0.131 4.131 22 H 0.154 0.846 23 C -0.142 4.142 24 C -0.067 4.067 25 C -0.093 4.093 26 N -0.178 5.178 27 N -0.191 5.191 28 C -0.118 4.118 29 N -0.160 5.160 30 C -0.008 4.008 31 H 0.117 0.883 32 H 0.088 0.912 33 H 0.050 0.950 34 H 0.033 0.967 35 H 0.039 0.961 36 H 0.057 0.943 37 H 0.062 0.938 38 H 0.054 0.946 39 H 0.256 0.744 40 H 0.087 0.913 41 H 0.113 0.887 42 H 0.129 0.871 43 H 0.133 0.867 44 H 0.276 0.724 45 H 0.119 0.881 46 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -4.319 -2.133 20.026 20.597 hybrid contribution -0.239 0.440 -2.625 2.672 sum -4.558 -1.693 17.401 18.068 Atomic orbital electron populations 1.22999 0.79305 1.03852 1.00861 1.87903 1.21726 1.26962 1.94908 1.23473 0.93703 0.85331 0.95606 0.88170 1.21302 0.87130 0.94630 0.92325 1.44529 1.21980 1.66373 1.02166 1.19434 1.02665 1.29354 0.85881 0.89913 1.25644 0.98418 1.01519 0.99971 1.70152 1.20492 1.48455 1.20644 0.85087 0.77327 0.78127 0.78837 1.21565 1.21836 1.19205 1.21967 0.97360 0.95918 0.84443 1.21810 0.95491 0.98313 0.79875 0.90544 1.45709 1.22838 1.61213 1.05179 1.20592 0.82432 0.77245 0.88436 1.90768 1.30534 1.43440 1.79851 1.21623 0.96749 1.04690 0.90049 0.84568 1.21509 0.97874 1.01827 0.93016 1.20361 0.86997 1.04598 0.94757 1.25299 0.94103 1.02521 0.87326 1.73985 1.05322 1.20188 1.18305 1.74402 1.03751 1.19947 1.21003 1.27059 0.97138 1.02017 0.85598 1.46236 1.09000 1.51322 1.09408 1.22140 0.99998 1.04061 0.74553 0.88301 0.91154 0.95007 0.96699 0.96140 0.94262 0.93777 0.94596 0.74439 0.91346 0.88679 0.87141 0.86708 0.72362 0.88062 0.84305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 10.85 113.37 1.23 1.79 16 2 O -0.40 -12.34 10.43 -148.98 -1.55 -13.90 16 3 C 0.08 2.51 3.09 31.78 0.10 2.61 16 4 H 0.10 2.49 7.67 -2.39 -0.02 2.47 16 5 C 0.17 8.05 5.15 86.73 0.45 8.50 16 6 N -0.62 -30.94 3.40 -691.89 -2.35 -33.29 16 7 C -0.24 -13.47 10.28 84.04 0.86 -12.61 16 8 H 0.08 4.38 7.83 -2.91 -0.02 4.36 16 9 C -0.06 -3.48 5.49 84.86 0.47 -3.02 16 10 N -0.95 -55.78 10.31 21.65 0.22 -55.56 16 11 Si 0.98 45.03 29.55 68.60 2.03 47.06 16 12 H -0.29 -13.24 7.11 99.48 0.71 -12.54 16 13 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 14 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 15 C 0.13 5.00 6.93 86.85 0.60 5.60 16 16 C 0.15 4.79 3.09 46.38 0.14 4.93 16 17 H 0.08 2.95 7.63 -2.39 -0.02 2.93 16 18 N -0.70 -13.50 5.12 -435.96 -2.23 -15.73 16 19 C 0.53 10.53 7.14 87.66 0.63 11.16 16 20 O -0.57 -17.39 15.52 -3.02 -0.05 -17.44 16 21 C -0.11 -1.20 2.54 -11.38 -0.03 -1.23 16 22 H 0.14 0.95 8.12 -2.39 -0.02 0.93 16 23 C -0.10 -1.34 4.68 30.79 0.14 -1.19 16 24 C -0.03 -0.33 6.34 30.04 0.19 -0.14 16 25 C 0.18 3.14 7.75 138.14 1.07 4.21 16 26 N -0.34 -8.55 12.21 -50.28 -0.61 -9.16 16 27 N -0.35 -8.45 12.23 -60.30 -0.74 -9.19 16 28 C 0.17 2.41 12.83 180.27 2.31 4.72 16 29 N -0.47 -6.06 3.11 -519.38 -1.62 -7.68 16 30 C 0.11 0.87 6.14 86.54 0.53 1.40 16 31 H 0.10 1.78 8.14 -2.38 -0.02 1.76 16 32 H 0.07 1.03 8.11 -2.38 -0.02 1.01 16 33 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.01 0.82 7.30 -2.39 -0.02 0.80 16 35 H 0.02 1.05 7.50 -2.39 -0.02 1.04 16 36 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 37 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.42 4.55 8.18 -92.71 -0.76 3.79 16 40 H 0.07 1.05 8.12 -2.39 -0.02 1.03 16 41 H 0.09 1.37 7.79 -2.38 -0.02 1.35 16 42 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.11 1.00 8.14 -2.38 -0.02 0.98 16 44 H 0.26 1.01 8.06 -2.91 -0.02 0.99 16 45 H 0.10 0.84 8.12 -2.38 -0.02 0.82 16 46 H 0.14 0.12 7.87 -2.38 -0.02 0.11 16 Total: -1.00 -83.62 374.95 2.04 -81.58 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: 0.24 Total: 6.57 kcal Atomic # 6 Polarization: 18.04 SS G_CDS: 8.69 Total: 26.73 kcal Atomic # 7 Polarization: -123.28 SS G_CDS: -7.33 Total: -130.60 kcal Atomic # 8 Polarization: -29.74 SS G_CDS: -1.60 Total: -31.34 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -83.62 2.04 -81.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082382446.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.904 kcal (2) G-P(sol) polarization free energy of solvation -83.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.584 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds