Wall clock time and date at job start Tue Mar 31 2020 18:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 114.00258 * 2 1 4 4 C 1.53785 * 113.69063 * 110.93650 * 3 2 1 5 5 C 1.53779 * 87.08093 * 139.99216 * 4 3 2 6 6 C 1.50701 * 113.69072 * 220.00479 * 5 4 3 7 7 O 1.21280 * 119.99668 * 97.53283 * 6 5 4 8 8 N 1.34777 * 120.00062 * 277.53753 * 6 5 4 9 9 C 1.46503 * 119.99819 * 179.97438 * 8 6 5 10 10 C 1.50701 * 109.46820 * 180.02562 * 9 8 6 11 11 C 1.35345 * 126.75350 * 94.71365 * 10 9 8 12 12 N 1.35319 * 106.17505 * 179.85003 * 11 10 9 13 13 C 1.46491 * 125.86783 * 180.11862 * 12 11 10 14 14 C 1.53946 * 113.74376 * 14.06083 * 13 12 11 15 15 N 1.47808 * 86.04201 * 222.08481 * 14 13 12 16 16 C 1.36935 * 134.46316 * 204.64620 * 15 14 13 17 17 H 1.07994 * 120.00766 * 179.86688 * 16 15 14 18 18 C 1.38813 * 119.99650 * 359.86947 * 16 15 14 19 19 N 1.31625 * 120.00184 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00255 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46763 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47129 * 119.99650 * 20 18 16 23 23 H 1.48490 * 109.47178 * 239.99925 * 20 18 16 24 24 C 1.47581 * 91.04745 * 24.55270 * 15 14 13 25 25 N 1.28720 * 108.26051 * 0.41599 * 12 11 10 26 26 N 1.28636 * 110.17883 * 359.73702 * 25 12 11 27 27 C 1.53781 * 113.61413 * 208.47320 * 3 2 1 28 28 H 1.09002 * 109.46781 * 300.00325 * 1 2 3 29 29 H 1.09002 * 109.46817 * 60.00169 * 1 2 3 30 30 H 1.08995 * 109.47317 * 179.97438 * 1 2 3 31 31 H 1.09002 * 112.84974 * 339.66626 * 3 2 1 32 32 H 1.09003 * 113.60734 * 254.54335 * 4 3 2 33 33 H 1.08996 * 113.61146 * 25.43833 * 4 3 2 34 34 H 1.09003 * 113.61186 * 89.11185 * 5 4 3 35 35 H 0.96997 * 119.99534 * 0.02562 * 8 6 5 36 36 H 1.08995 * 109.46896 * 299.99664 * 9 8 6 37 37 H 1.09001 * 109.46875 * 59.99850 * 9 8 6 38 38 H 1.08000 * 126.91331 * 359.97438 * 11 10 9 39 39 H 1.09001 * 112.94413 * 145.66312 * 13 12 11 40 40 H 1.08996 * 113.77255 * 336.35530 * 14 13 12 41 41 H 1.09005 * 113.76310 * 107.74698 * 14 13 12 42 42 H 0.96994 * 119.99921 * 180.02562 * 19 18 16 43 43 H 1.09006 * 113.76847 * 221.15490 * 24 15 14 44 44 H 1.09000 * 113.87554 * 89.76994 * 24 15 14 45 45 H 1.09005 * 113.61302 * 334.47944 * 27 3 2 46 46 H 1.08993 * 113.62030 * 105.38790 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 2.7213 1.6652 1.3153 5 6 3.8114 2.3246 0.4540 6 6 5.2104 2.0863 0.9612 7 8 5.8872 1.2020 0.4807 8 7 5.7094 2.8559 1.9488 9 6 7.0692 2.6239 2.4422 10 6 7.3812 3.6106 3.5377 11 6 7.2453 3.4118 4.8695 12 7 7.6439 4.5598 5.4646 13 6 7.6735 4.8135 6.9071 14 6 7.5300 3.5421 7.7631 15 7 6.6266 4.3422 8.6166 16 6 6.2375 4.2761 9.9278 17 1 5.5456 5.0050 10.3233 18 6 6.7326 3.2723 10.7489 19 7 7.5755 2.3837 10.2669 20 14 6.2014 3.1816 12.5375 21 1 5.2547 4.2879 12.8293 22 1 5.5346 1.8791 12.7904 23 1 7.3930 3.3062 13.4147 24 6 6.3142 5.2419 7.4892 25 7 7.9866 5.3929 4.5451 26 7 7.8414 4.8573 3.3846 27 6 3.3923 1.3643 -0.6718 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.3220 2.0752 -0.3490 32 1 2.1660 2.3713 1.9327 33 1 3.0715 0.7972 1.8738 34 1 3.6155 3.3730 0.2291 35 1 5.1678 3.5628 2.3333 36 1 7.1452 1.6099 2.8346 37 1 7.7789 2.7514 1.6248 38 1 6.8920 2.5162 5.3590 39 1 8.5018 5.4547 7.2089 40 1 7.0338 2.7194 7.2482 41 1 8.4523 3.2403 8.2595 42 1 7.9211 1.6821 10.8406 43 1 6.2676 6.2948 7.7672 44 1 5.4601 4.9214 6.8925 45 1 3.9262 0.4141 -0.6564 46 1 3.3790 1.8275 -1.6583 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001094298611.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:57 Heat of formation + Delta-G solvation = 99.493167 kcal Electronic energy + Delta-G solvation = -27934.925982 eV Core-core repulsion = 23865.079347 eV Total energy + Delta-G solvation = -4069.846635 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.10087 -40.59880 -38.70436 -38.37698 -36.14181 -35.18786 -33.43421 -32.01950 -31.30546 -28.14444 -27.89647 -26.91161 -26.05639 -25.40111 -24.95721 -24.38600 -21.97161 -21.32557 -21.00480 -19.81892 -19.64196 -18.13430 -17.37962 -16.80708 -16.49212 -16.37060 -15.97780 -15.66842 -15.36855 -15.19836 -15.10687 -14.79811 -14.38194 -14.08605 -13.76815 -13.42063 -13.12860 -12.94061 -12.78248 -12.46389 -12.24761 -12.14023 -12.12249 -11.87525 -11.50920 -11.41831 -11.21577 -11.21036 -11.06130 -11.01035 -10.97036 -10.55341 -10.23629 -10.05156 -9.92306 -9.80349 -9.58549 -9.18996 -9.13438 -9.07269 -7.29219 -6.07868 -3.43401 1.78574 2.40182 2.48581 2.61173 3.21965 3.23883 3.29704 3.32130 3.59485 4.09192 4.19046 4.20564 4.33348 4.39669 4.47658 4.68389 4.70898 4.75691 4.89765 4.94126 5.02135 5.04486 5.12661 5.17450 5.29958 5.36359 5.37605 5.45374 5.49908 5.58743 5.63126 5.71324 5.73320 5.91664 6.01607 6.07421 6.13093 6.25686 6.27743 6.50527 6.76519 6.88559 6.99695 7.13329 7.37421 7.64625 8.09215 8.70538 8.72502 9.38675 10.15850 11.09427 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011483 B = 0.002265 C = 0.001986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2437.755722 B =12361.500343 C =14094.216186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.374 6.374 3 C 0.061 3.939 4 C -0.139 4.139 5 C -0.138 4.138 6 C 0.527 3.473 7 O -0.539 6.539 8 N -0.721 5.721 9 C 0.214 3.786 10 C -0.063 4.063 11 C -0.015 4.015 12 N -0.265 5.265 13 C 0.077 3.923 14 C 0.163 3.837 15 N -0.599 5.599 16 C -0.232 4.232 17 H 0.088 0.912 18 C -0.001 4.001 19 N -0.919 5.919 20 Si 0.920 3.080 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.287 1.287 24 C 0.120 3.880 25 N -0.089 5.089 26 N -0.267 5.267 27 C -0.112 4.112 28 H 0.042 0.958 29 H 0.041 0.959 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.078 0.922 33 H 0.097 0.903 34 H 0.116 0.884 35 H 0.403 0.597 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.191 0.809 39 H 0.132 0.868 40 H 0.042 0.958 41 H 0.092 0.908 42 H 0.259 0.741 43 H 0.062 0.938 44 H 0.043 0.957 45 H 0.106 0.894 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.184 -0.380 -18.326 20.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.293 6.293 3 C 0.003 3.997 4 C -0.177 4.177 5 C -0.159 4.159 6 C 0.313 3.687 7 O -0.415 6.415 8 N -0.373 5.373 9 C 0.089 3.911 10 C -0.202 4.202 11 C -0.168 4.168 12 N -0.057 5.057 13 C -0.025 4.025 14 C 0.037 3.963 15 N -0.325 5.325 16 C -0.359 4.359 17 H 0.106 0.894 18 C -0.199 4.199 19 N -0.564 5.564 20 Si 0.749 3.251 21 H -0.202 1.202 22 H -0.214 1.214 23 H -0.214 1.214 24 C -0.007 4.007 25 N -0.068 5.068 26 N -0.134 5.134 27 C -0.150 4.150 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.103 0.897 31 H 0.108 0.892 32 H 0.097 0.903 33 H 0.115 0.885 34 H 0.134 0.866 35 H 0.237 0.763 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.208 0.792 39 H 0.150 0.850 40 H 0.059 0.941 41 H 0.110 0.890 42 H 0.069 0.931 43 H 0.080 0.920 44 H 0.060 0.940 45 H 0.124 0.876 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -9.022 0.126 -18.573 20.648 hybrid contribution -1.129 -0.513 1.671 2.081 sum -10.151 -0.387 -16.901 19.719 Atomic orbital electron populations 1.22804 0.81193 1.02862 0.99923 1.87985 1.19620 1.27146 1.94516 1.23702 0.94117 0.85463 0.96456 1.23456 0.95783 1.01181 0.97316 1.22493 0.92257 1.01555 0.99591 1.20258 0.88112 0.81236 0.79054 1.90708 1.60594 1.32325 1.57916 1.46058 1.16136 1.36774 1.38319 1.19289 0.83424 0.95260 0.93105 1.21727 1.09459 0.95559 0.93413 1.23508 1.05709 0.94343 0.93286 1.47914 1.39047 1.09037 1.09733 1.25290 1.02234 1.04694 0.70276 1.22747 0.96831 0.89500 0.87247 1.45680 1.51465 1.30534 1.04851 1.19044 1.23413 1.11250 0.82189 0.89433 1.24862 0.99127 0.96982 0.98922 1.69769 1.33928 1.17283 1.35466 0.85942 0.77935 0.77656 0.83577 1.20210 1.21408 1.21358 1.22930 0.92288 0.96639 0.88866 1.78274 1.19154 1.18061 0.91311 1.75020 1.15692 1.06870 1.15822 1.23111 0.94289 1.00596 0.96975 0.93933 0.94038 0.89652 0.89187 0.90287 0.88483 0.86624 0.76294 0.89650 0.89747 0.79231 0.85024 0.94081 0.89013 0.93116 0.91974 0.93988 0.87552 0.90401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 10.85 101.05 1.10 1.28 16 2 O -0.37 -3.57 10.72 -35.23 -0.38 -3.95 16 3 C 0.06 0.47 4.30 -25.92 -0.11 0.36 16 4 C -0.14 -1.09 7.47 -25.92 -0.19 -1.29 16 5 C -0.14 -1.12 4.14 -90.96 -0.38 -1.50 16 6 C 0.53 5.99 7.36 -10.98 -0.08 5.91 16 7 O -0.54 -8.11 15.90 5.56 0.09 -8.02 16 8 N -0.72 -7.62 5.55 -61.47 -0.34 -7.96 16 9 C 0.21 2.55 6.23 -5.19 -0.03 2.51 16 10 C -0.06 -0.87 6.61 -82.78 -0.55 -1.42 16 11 C -0.01 -0.21 10.72 -17.05 -0.18 -0.39 16 12 N -0.26 -4.25 3.54 -56.29 -0.20 -4.45 16 13 C 0.08 1.31 5.14 -70.13 -0.36 0.95 16 14 C 0.16 3.31 6.90 -2.84 -0.02 3.29 16 15 N -0.60 -13.64 3.70 -177.85 -0.66 -14.30 16 16 C -0.23 -5.92 10.70 -15.06 -0.16 -6.08 16 17 H 0.09 2.16 7.83 -52.49 -0.41 1.75 16 18 C 0.00 -0.04 5.50 -17.43 -0.10 -0.13 16 19 N -0.92 -24.93 11.39 55.49 0.63 -24.30 16 20 Si 0.92 20.55 29.55 -169.99 -5.02 15.52 16 21 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 22 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.29 -6.48 7.11 56.52 0.40 -6.07 16 24 C 0.12 2.18 8.74 -2.96 -0.03 2.15 16 25 N -0.09 -1.53 13.17 60.35 0.79 -0.73 16 26 N -0.27 -4.38 12.41 33.29 0.41 -3.96 16 27 C -0.11 -0.96 7.24 -25.92 -0.19 -1.15 16 28 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.04 0.21 8.14 -51.93 -0.42 -0.22 16 30 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.09 0.50 7.88 -51.93 -0.41 0.09 16 32 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.10 0.93 8.10 -51.93 -0.42 0.51 16 34 H 0.12 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.40 3.70 8.46 -40.82 -0.35 3.36 16 36 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 37 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.19 2.40 6.74 -52.49 -0.35 2.05 16 39 H 0.13 2.17 8.14 -51.93 -0.42 1.75 16 40 H 0.04 0.81 6.31 -51.93 -0.33 0.49 16 41 H 0.09 2.08 7.17 -51.93 -0.37 1.70 16 42 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 43 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 45 H 0.11 1.17 7.44 -51.93 -0.39 0.79 16 46 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 386.94 15.07 5.83 5.83 Total: -1.00 -31.46 386.94 -6.93 -38.40 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -6.81 Total: 3.42 kcal Atomic # 6 Polarization: 5.77 SS G_CDS: -1.28 Total: 4.49 kcal Atomic # 7 Polarization: -56.34 SS G_CDS: 0.64 Total: -55.70 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: -0.29 Total: -11.97 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -31.46 -6.93 -38.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094298611.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.889 kcal (2) G-P(sol) polarization free energy of solvation -31.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.395 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds