Wall clock time and date at job start Tue Mar 31 2020 18:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 114.00258 * 2 1 4 4 C 1.53785 * 113.69063 * 110.93650 * 3 2 1 5 5 C 1.53779 * 87.08093 * 139.99216 * 4 3 2 6 6 C 1.50701 * 113.69072 * 220.00479 * 5 4 3 7 7 O 1.21280 * 119.99668 * 97.53283 * 6 5 4 8 8 N 1.34777 * 120.00062 * 277.53753 * 6 5 4 9 9 C 1.46503 * 119.99819 * 179.97438 * 8 6 5 10 10 C 1.50701 * 109.46820 * 180.02562 * 9 8 6 11 11 C 1.35345 * 126.75350 * 94.71365 * 10 9 8 12 12 N 1.35319 * 106.17505 * 179.85003 * 11 10 9 13 13 C 1.46491 * 125.86783 * 180.11862 * 12 11 10 14 14 C 1.53946 * 113.74376 * 14.06083 * 13 12 11 15 15 N 1.47808 * 86.04201 * 222.08481 * 14 13 12 16 16 C 1.36935 * 134.46316 * 204.64620 * 15 14 13 17 17 H 1.07994 * 120.00766 * 179.86688 * 16 15 14 18 18 C 1.38813 * 119.99650 * 359.86947 * 16 15 14 19 19 N 1.31625 * 120.00184 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00255 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46763 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47129 * 119.99650 * 20 18 16 23 23 H 1.48490 * 109.47178 * 239.99925 * 20 18 16 24 24 C 1.47581 * 91.04745 * 24.55270 * 15 14 13 25 25 N 1.28720 * 108.26051 * 0.41599 * 12 11 10 26 26 N 1.28636 * 110.17883 * 359.73702 * 25 12 11 27 27 C 1.53781 * 113.61413 * 208.47320 * 3 2 1 28 28 H 1.09002 * 109.46781 * 300.00325 * 1 2 3 29 29 H 1.09002 * 109.46817 * 60.00169 * 1 2 3 30 30 H 1.08995 * 109.47317 * 179.97438 * 1 2 3 31 31 H 1.09002 * 112.84974 * 339.66626 * 3 2 1 32 32 H 1.09003 * 113.60734 * 254.54335 * 4 3 2 33 33 H 1.08996 * 113.61146 * 25.43833 * 4 3 2 34 34 H 1.09003 * 113.61186 * 89.11185 * 5 4 3 35 35 H 0.96997 * 119.99534 * 0.02562 * 8 6 5 36 36 H 1.08995 * 109.46896 * 299.99664 * 9 8 6 37 37 H 1.09001 * 109.46875 * 59.99850 * 9 8 6 38 38 H 1.08000 * 126.91331 * 359.97438 * 11 10 9 39 39 H 1.09001 * 112.94413 * 145.66312 * 13 12 11 40 40 H 1.08996 * 113.77255 * 336.35530 * 14 13 12 41 41 H 1.09005 * 113.76310 * 107.74698 * 14 13 12 42 42 H 0.96994 * 119.99921 * 180.02562 * 19 18 16 43 43 H 1.09006 * 113.76847 * 221.15490 * 24 15 14 44 44 H 1.09000 * 113.87554 * 89.76994 * 24 15 14 45 45 H 1.09005 * 113.61302 * 334.47944 * 27 3 2 46 46 H 1.08993 * 113.62030 * 105.38790 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 2.7213 1.6652 1.3153 5 6 3.8114 2.3246 0.4540 6 6 5.2104 2.0863 0.9612 7 8 5.8872 1.2020 0.4807 8 7 5.7094 2.8559 1.9488 9 6 7.0692 2.6239 2.4422 10 6 7.3812 3.6106 3.5377 11 6 7.2453 3.4118 4.8695 12 7 7.6439 4.5598 5.4646 13 6 7.6735 4.8135 6.9071 14 6 7.5300 3.5421 7.7631 15 7 6.6266 4.3422 8.6166 16 6 6.2375 4.2761 9.9278 17 1 5.5456 5.0050 10.3233 18 6 6.7326 3.2723 10.7489 19 7 7.5755 2.3837 10.2669 20 14 6.2014 3.1816 12.5375 21 1 5.2547 4.2879 12.8293 22 1 5.5346 1.8791 12.7904 23 1 7.3930 3.3062 13.4147 24 6 6.3142 5.2419 7.4892 25 7 7.9866 5.3929 4.5451 26 7 7.8414 4.8573 3.3846 27 6 3.3923 1.3643 -0.6718 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.3220 2.0752 -0.3490 32 1 2.1660 2.3713 1.9327 33 1 3.0715 0.7972 1.8738 34 1 3.6155 3.3730 0.2291 35 1 5.1678 3.5628 2.3333 36 1 7.1452 1.6099 2.8346 37 1 7.7789 2.7514 1.6248 38 1 6.8920 2.5162 5.3590 39 1 8.5018 5.4547 7.2089 40 1 7.0338 2.7194 7.2482 41 1 8.4523 3.2403 8.2595 42 1 7.9211 1.6821 10.8406 43 1 6.2676 6.2948 7.7672 44 1 5.4601 4.9214 6.8925 45 1 3.9262 0.4141 -0.6564 46 1 3.3790 1.8275 -1.6583 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001094298611.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:57 Heat of formation + Delta-G solvation = 77.226424 kcal Electronic energy + Delta-G solvation = -27935.891541 eV Core-core repulsion = 23865.079347 eV Total energy + Delta-G solvation = -4070.812194 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.35879 -41.38061 -39.96087 -39.42530 -36.82050 -36.22006 -34.95917 -33.65889 -32.47198 -29.72503 -28.86156 -27.62546 -26.86701 -26.68552 -26.08587 -25.67114 -23.42753 -22.42163 -21.91747 -21.13896 -20.53470 -19.10584 -18.83106 -18.17938 -17.55829 -17.11702 -16.98027 -16.88407 -16.53304 -16.17783 -15.97791 -15.86151 -15.73207 -15.18000 -14.83314 -14.62670 -14.33493 -14.21537 -13.71070 -13.57203 -13.45534 -13.39995 -13.07959 -12.96048 -12.80390 -12.71509 -12.63619 -12.43582 -12.10159 -12.06799 -11.82658 -11.79364 -11.73286 -11.66567 -11.08128 -10.96238 -10.85896 -10.41475 -10.26010 -10.13788 -9.11207 -8.01415 -5.36672 0.56029 1.23487 1.28840 1.47794 1.49544 1.58177 1.60263 2.35194 2.42597 2.98691 3.07347 3.11816 3.31028 3.33265 3.44344 3.57757 3.73032 3.79349 3.89627 3.91479 3.99112 4.11265 4.15513 4.38655 4.48085 4.57000 4.57247 4.60315 4.61278 4.69547 4.76429 4.81978 4.90201 4.91472 5.00186 5.00486 5.04791 5.08987 5.09836 5.24885 5.36643 5.37185 5.65692 5.77035 6.35943 6.52206 6.80182 7.21812 7.45238 7.48611 8.33344 9.15582 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011483 B = 0.002265 C = 0.001986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2437.755722 B =12361.500343 C =14094.216186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.405 6.405 3 C 0.064 3.936 4 C -0.137 4.137 5 C -0.128 4.128 6 C 0.525 3.475 7 O -0.581 6.581 8 N -0.713 5.713 9 C 0.218 3.782 10 C -0.048 4.048 11 C -0.014 4.014 12 N -0.268 5.268 13 C 0.105 3.895 14 C 0.165 3.835 15 N -0.628 5.628 16 C -0.236 4.236 17 H 0.092 0.908 18 C -0.057 4.057 19 N -0.949 5.949 20 Si 0.979 3.021 21 H -0.264 1.264 22 H -0.293 1.293 23 H -0.292 1.292 24 C 0.126 3.874 25 N -0.107 5.107 26 N -0.280 5.280 27 C -0.119 4.119 28 H 0.050 0.950 29 H 0.056 0.944 30 H 0.089 0.911 31 H 0.120 0.880 32 H 0.101 0.899 33 H 0.073 0.927 34 H 0.149 0.851 35 H 0.412 0.588 36 H 0.092 0.908 37 H 0.079 0.921 38 H 0.206 0.794 39 H 0.138 0.862 40 H 0.047 0.953 41 H 0.063 0.937 42 H 0.253 0.747 43 H 0.077 0.923 44 H 0.055 0.945 45 H 0.074 0.926 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.014 0.943 -18.989 22.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.325 6.325 3 C 0.007 3.993 4 C -0.175 4.175 5 C -0.149 4.149 6 C 0.313 3.687 7 O -0.461 6.461 8 N -0.364 5.364 9 C 0.092 3.908 10 C -0.187 4.187 11 C -0.167 4.167 12 N -0.061 5.061 13 C 0.002 3.998 14 C 0.038 3.962 15 N -0.355 5.355 16 C -0.364 4.364 17 H 0.110 0.890 18 C -0.251 4.251 19 N -0.597 5.597 20 Si 0.807 3.193 21 H -0.188 1.188 22 H -0.220 1.220 23 H -0.219 1.219 24 C 0.000 4.000 25 N -0.086 5.086 26 N -0.147 5.147 27 C -0.157 4.157 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.107 0.893 31 H 0.138 0.862 32 H 0.119 0.881 33 H 0.091 0.909 34 H 0.166 0.834 35 H 0.248 0.752 36 H 0.110 0.890 37 H 0.097 0.903 38 H 0.223 0.777 39 H 0.156 0.844 40 H 0.065 0.935 41 H 0.081 0.919 42 H 0.062 0.938 43 H 0.095 0.905 44 H 0.072 0.928 45 H 0.092 0.908 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -10.878 1.501 -19.258 22.169 hybrid contribution -0.570 -0.935 1.759 2.072 sum -11.448 0.566 -17.498 20.918 Atomic orbital electron populations 1.22971 0.79679 1.03604 1.01046 1.87950 1.21453 1.28411 1.94644 1.23815 0.94012 0.85613 0.95886 1.23421 0.95780 1.00737 0.97602 1.22578 0.89928 1.03216 0.99188 1.20857 0.89083 0.80336 0.78473 1.90694 1.61993 1.34123 1.59288 1.45975 1.15594 1.36833 1.38048 1.19244 0.84166 0.94986 0.92383 1.21895 1.08225 0.94897 0.93711 1.23818 1.05133 0.94280 0.93467 1.47713 1.39591 1.09607 1.09162 1.24697 1.01977 1.02460 0.70640 1.22617 0.95316 0.90806 0.87433 1.45919 1.52308 1.32088 1.05209 1.19373 1.22553 1.10740 0.83692 0.89049 1.25608 0.99807 0.97248 1.02448 1.69922 1.35424 1.17965 1.36366 0.85004 0.77366 0.77512 0.79383 1.18822 1.21968 1.21922 1.23022 0.93009 0.96655 0.87326 1.78282 1.20175 1.18572 0.91568 1.75009 1.16096 1.07926 1.15631 1.23103 0.94994 0.99429 0.98207 0.93098 0.92528 0.89288 0.86249 0.88098 0.90874 0.83363 0.75177 0.89012 0.90284 0.77713 0.84416 0.93542 0.91858 0.93814 0.90530 0.92770 0.90773 0.88860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 10.85 113.37 1.23 1.48 16 2 O -0.41 -7.35 10.72 -148.98 -1.60 -8.95 16 3 C 0.06 0.86 4.30 31.12 0.13 1.00 16 4 C -0.14 -1.90 7.47 31.12 0.23 -1.67 16 5 C -0.13 -1.83 4.14 -11.01 -0.05 -1.88 16 6 C 0.52 11.42 7.36 87.66 0.65 12.06 16 7 O -0.58 -17.65 15.90 -3.03 -0.05 -17.70 16 8 N -0.71 -13.93 5.55 -466.78 -2.59 -16.52 16 9 C 0.22 4.91 6.23 85.63 0.53 5.45 16 10 C -0.05 -1.26 6.61 41.60 0.28 -0.98 16 11 C -0.01 -0.37 10.72 83.49 0.89 0.53 16 12 N -0.27 -8.17 3.54 -332.01 -1.18 -9.34 16 13 C 0.10 3.41 5.14 46.75 0.24 3.65 16 14 C 0.16 6.62 6.90 86.44 0.60 7.22 16 15 N -0.63 -28.12 3.70 -716.60 -2.65 -30.78 16 16 C -0.24 -11.88 10.70 84.03 0.90 -10.98 16 17 H 0.09 4.40 7.83 -2.91 -0.02 4.37 16 18 C -0.06 -2.97 5.50 84.86 0.47 -2.50 16 19 N -0.95 -52.23 11.39 21.65 0.25 -51.98 16 20 Si 0.98 42.22 29.55 68.60 2.03 44.25 16 21 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16 22 H -0.29 -12.74 7.11 99.48 0.71 -12.04 16 23 H -0.29 -12.72 7.11 99.48 0.71 -12.02 16 24 C 0.13 4.33 8.74 86.49 0.76 5.08 16 25 N -0.11 -3.52 13.17 37.02 0.49 -3.03 16 26 N -0.28 -8.74 12.41 -48.60 -0.60 -9.34 16 27 C -0.12 -1.94 7.24 31.12 0.23 -1.71 16 28 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.06 0.43 8.14 -2.39 -0.02 0.42 16 30 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.12 0.90 7.88 -2.39 -0.02 0.88 16 32 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.07 1.38 8.10 -2.39 -0.02 1.36 16 34 H 0.15 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.41 6.59 8.46 -92.71 -0.78 5.81 16 36 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.21 4.82 6.74 -2.91 -0.02 4.80 16 39 H 0.14 4.37 8.14 -2.39 -0.02 4.35 16 40 H 0.05 1.81 6.31 -2.39 -0.02 1.79 16 41 H 0.06 2.92 7.17 -2.38 -0.02 2.90 16 42 H 0.25 13.61 8.31 -92.71 -0.77 12.84 16 43 H 0.08 2.43 8.14 -2.38 -0.02 2.41 16 44 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 45 H 0.07 1.70 7.44 -2.38 -0.02 1.69 16 46 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -68.29 386.94 1.40 -66.90 By element: Atomic # 1 Polarization: 19.52 SS G_CDS: 0.22 Total: 19.74 kcal Atomic # 6 Polarization: 9.66 SS G_CDS: 7.08 Total: 16.75 kcal Atomic # 7 Polarization: -114.70 SS G_CDS: -6.29 Total: -120.99 kcal Atomic # 8 Polarization: -25.00 SS G_CDS: -1.64 Total: -26.65 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.25 kcal Total: -68.29 1.40 -66.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094298611.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.122 kcal (2) G-P(sol) polarization free energy of solvation -68.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds