Wall clock time and date at job start Tue Mar 31 2020 18:31:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42899 * 113.99971 * 2 1 4 4 H 1.08994 * 109.46941 * 329.36162 * 3 2 1 5 5 C 1.50698 * 109.47326 * 89.36650 * 3 2 1 6 6 O 1.21283 * 119.99884 * 4.99616 * 5 3 2 7 7 N 1.34767 * 120.00188 * 185.00042 * 5 3 2 8 8 C 1.47583 * 134.49467 * 180.02562 * 7 5 3 9 9 C 1.53946 * 86.11730 * 155.35751 * 8 7 5 10 10 N 1.46494 * 113.74134 * 137.95445 * 9 8 7 11 11 C 1.35318 * 125.87007 * 276.92117 * 10 9 8 12 12 C 1.35345 * 106.17787 * 180.20633 * 11 10 9 13 13 C 1.50702 * 126.75222 * 179.77462 * 12 11 10 14 14 N 1.46494 * 109.47121 * 94.99939 * 13 12 11 15 15 C 1.36938 * 120.00335 * 179.97438 * 14 13 12 16 16 H 1.08001 * 119.99557 * 0.02562 * 15 14 13 17 17 C 1.38814 * 120.00032 * 180.02562 * 15 14 13 18 18 N 1.31614 * 119.99997 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99659 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47209 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47185 * 119.99841 * 19 17 15 22 22 H 1.48498 * 109.46772 * 239.99894 * 19 17 15 23 23 N 1.33781 * 106.49713 * 359.64595 * 12 11 10 24 24 N 1.28628 * 108.88205 * 0.36567 * 23 12 11 25 25 C 1.47816 * 134.45697 * 359.86162 * 7 5 3 26 26 C 1.53003 * 109.46871 * 209.36602 * 3 2 1 27 27 C 1.52994 * 117.50007 * 123.40817 * 26 3 2 28 28 C 1.52999 * 117.50153 * 54.74580 * 26 3 2 29 29 H 1.08999 * 109.47249 * 184.81701 * 1 2 3 30 30 H 1.09006 * 109.46952 * 304.81020 * 1 2 3 31 31 H 1.09000 * 109.47106 * 64.80908 * 1 2 3 32 32 H 1.09000 * 113.76803 * 41.05423 * 8 7 5 33 33 H 1.08995 * 113.87150 * 269.66925 * 8 7 5 34 34 H 1.09007 * 113.73944 * 269.15474 * 9 8 7 35 35 H 1.07998 * 126.90674 * 359.94354 * 11 10 9 36 36 H 1.09005 * 109.46807 * 215.00143 * 13 12 11 37 37 H 1.09001 * 109.46782 * 334.99998 * 13 12 11 38 38 H 0.97006 * 120.00019 * 0.02562 * 14 13 12 39 39 H 0.97005 * 119.99528 * 180.02562 * 18 17 15 40 40 H 1.08995 * 113.76861 * 90.38111 * 25 7 5 41 41 H 1.08998 * 113.83451 * 318.92157 * 25 7 5 42 42 H 1.09001 * 115.54688 * 269.07891 * 26 3 2 43 43 H 1.08997 * 117.50269 * 359.97438 * 27 26 3 44 44 H 1.09002 * 117.49831 * 145.01840 * 27 26 3 45 45 H 1.09002 * 117.49902 * 214.98092 * 28 26 3 46 46 H 1.09001 * 117.49712 * 0.02562 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3502 1.9969 -0.5237 5 6 2.2002 1.7708 1.4207 6 8 1.9554 1.0212 2.3422 7 7 2.6420 3.0199 1.6673 8 6 2.9355 3.7904 2.8913 9 6 3.8879 4.6224 2.0135 10 7 3.8217 6.0627 2.2725 11 6 2.9136 6.9209 1.7528 12 6 3.2215 8.1419 2.2489 13 6 2.5062 9.4374 1.9645 14 7 1.5177 9.6904 3.0157 15 6 0.7419 10.8178 2.9690 16 1 0.8584 11.5203 2.1570 17 6 -0.1944 11.0578 3.9655 18 7 -0.3360 10.2020 4.9553 19 14 -1.2532 12.5954 3.9014 20 1 -0.9011 13.3890 2.6966 21 1 -2.6853 12.2080 3.8384 22 1 -1.0143 13.4119 5.1186 23 7 4.2842 7.9720 3.0437 24 7 4.6171 6.7296 3.0338 25 6 3.0299 4.1670 0.8196 26 6 3.3661 1.2600 -0.7074 27 6 3.5729 2.1968 -1.8992 28 6 3.4032 0.6928 -2.1279 29 1 -0.3634 -1.0240 0.0863 30 1 -0.3633 0.5867 0.8438 31 1 -0.3633 0.4374 -0.9299 32 1 3.4424 3.2119 3.6636 33 1 2.0841 4.3542 3.2724 34 1 4.9089 4.2413 1.9905 35 1 2.1080 6.6805 1.0749 36 1 3.2283 10.2536 1.9406 37 1 2.0021 9.3700 1.0004 38 1 1.4133 9.0597 3.7452 39 1 -0.9905 10.3695 5.6513 40 1 2.2052 4.8413 0.5887 41 1 3.6120 3.8886 -0.0589 42 1 4.2251 1.0654 -0.0652 43 1 2.7429 2.8452 -2.1796 44 1 4.5681 2.6182 -2.0413 45 1 4.2868 0.1254 -2.4203 46 1 2.4616 0.3524 -2.5586 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105223799.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:41 Heat of formation + Delta-G solvation = 114.561744 kcal Electronic energy + Delta-G solvation = -28547.716448 eV Core-core repulsion = 24478.523235 eV Total energy + Delta-G solvation = -4069.193213 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.16290 -41.01657 -39.28647 -37.77759 -36.75735 -35.02937 -33.54866 -31.89071 -30.54215 -29.98016 -28.50242 -27.13059 -26.34615 -25.79580 -23.94937 -22.94698 -22.85377 -21.81489 -21.11387 -20.74226 -19.64792 -18.33797 -17.72782 -17.24290 -17.06204 -16.48051 -16.36091 -16.10199 -15.26723 -15.12784 -14.79077 -14.64357 -14.47753 -14.06315 -14.01214 -13.69701 -13.41227 -13.31210 -13.14298 -12.83268 -12.65742 -12.15018 -12.13349 -12.10793 -11.81571 -11.74794 -11.32522 -11.24818 -10.99393 -10.91669 -10.84695 -10.74150 -10.51423 -10.09079 -9.97119 -9.78109 -9.73482 -9.33350 -8.94610 -8.89654 -6.94415 -5.76246 -3.06117 1.66276 1.81526 2.03395 2.50254 2.83358 2.85211 3.43076 3.43931 3.47538 3.49534 3.51962 3.69932 4.04881 4.12998 4.23208 4.30558 4.36432 4.47270 4.59471 4.63602 4.72624 4.76455 4.79213 4.92386 5.03077 5.07356 5.08384 5.09097 5.18057 5.29984 5.30796 5.34725 5.42324 5.50813 5.58786 5.59032 5.74093 6.13877 6.33217 6.48259 6.59568 6.64159 6.73272 7.00992 7.62045 7.69556 8.40820 8.75182 9.52830 10.08067 10.43663 11.46477 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.014589 B = 0.002332 C = 0.002208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.793193 B =12001.578445 C =12677.610967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.352 6.352 3 C 0.112 3.888 4 H 0.088 0.912 5 C 0.524 3.476 6 O -0.514 6.514 7 N -0.640 5.640 8 C 0.103 3.897 9 C 0.114 3.886 10 N -0.295 5.295 11 C -0.047 4.047 12 C 0.000 4.000 13 C 0.232 3.768 14 N -0.726 5.726 15 C -0.240 4.240 16 H 0.074 0.926 17 C -0.013 4.013 18 N -0.931 5.931 19 Si 0.909 3.091 20 H -0.279 1.279 21 H -0.292 1.292 22 H -0.291 1.291 23 N -0.250 5.250 24 N -0.090 5.090 25 C 0.095 3.905 26 C -0.158 4.158 27 C -0.174 4.174 28 C -0.154 4.154 29 H 0.093 0.907 30 H 0.046 0.954 31 H 0.044 0.956 32 H 0.102 0.898 33 H 0.101 0.899 34 H 0.146 0.854 35 H 0.188 0.812 36 H 0.040 0.960 37 H 0.038 0.962 38 H 0.385 0.615 39 H 0.255 0.745 40 H 0.104 0.896 41 H 0.107 0.893 42 H 0.115 0.885 43 H 0.100 0.900 44 H 0.105 0.895 45 H 0.100 0.900 46 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.117 -21.484 -17.368 28.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.269 6.269 3 C 0.050 3.950 4 H 0.106 0.894 5 C 0.313 3.687 6 O -0.387 6.387 7 N -0.379 5.379 8 C -0.020 4.020 9 C 0.010 3.990 10 N -0.089 5.089 11 C -0.197 4.197 12 C -0.137 4.137 13 C 0.103 3.897 14 N -0.371 5.371 15 C -0.371 4.371 16 H 0.092 0.908 17 C -0.209 4.209 18 N -0.580 5.580 19 Si 0.740 3.260 20 H -0.204 1.204 21 H -0.219 1.219 22 H -0.218 1.218 23 N -0.118 5.118 24 N -0.068 5.068 25 C -0.028 4.028 26 C -0.177 4.177 27 C -0.211 4.211 28 C -0.191 4.191 29 H 0.111 0.889 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.120 0.880 33 H 0.119 0.881 34 H 0.163 0.837 35 H 0.205 0.795 36 H 0.058 0.942 37 H 0.056 0.944 38 H 0.219 0.781 39 H 0.065 0.935 40 H 0.122 0.878 41 H 0.125 0.875 42 H 0.133 0.867 43 H 0.118 0.882 44 H 0.123 0.877 45 H 0.119 0.881 46 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 8.156 -22.243 -16.030 28.605 hybrid contribution -1.888 0.758 -0.258 2.051 sum 6.267 -21.485 -16.288 27.680 Atomic orbital electron populations 1.22923 0.80253 1.03669 1.00133 1.88032 1.20240 1.24424 1.94219 1.21441 0.95277 0.87041 0.91236 0.89399 1.20995 0.75989 0.79502 0.92247 1.90766 1.48880 1.52867 1.46216 1.49709 1.67371 1.10963 1.09879 1.23633 0.97503 0.90802 0.90059 1.23654 1.02684 0.75209 0.97412 1.47114 1.21339 1.08491 1.31998 1.23300 0.99445 0.90061 1.06849 1.22496 0.96165 0.97005 0.98065 1.18966 0.90230 0.87622 0.92903 1.42313 1.41512 1.26526 1.26743 1.19265 1.12319 0.98688 1.06808 0.90813 1.24766 1.00119 0.98747 0.97290 1.69689 1.38040 1.36665 1.13561 0.86093 0.80062 0.82573 0.77300 1.20448 1.21922 1.21833 1.75136 1.13045 1.06509 1.17063 1.78310 1.16181 0.99744 1.12555 1.23790 0.97648 0.86175 0.95237 1.22098 0.96301 1.07693 0.91598 1.23195 1.03873 0.93713 1.00346 1.22874 1.03963 0.95643 0.96579 0.88871 0.93532 0.93728 0.88013 0.88133 0.83659 0.79500 0.94241 0.94437 0.78110 0.93536 0.87828 0.87451 0.86720 0.88179 0.87695 0.88139 0.88188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.79 101.05 1.09 1.29 16 2 O -0.35 -3.44 9.70 -55.09 -0.53 -3.97 16 3 C 0.11 0.88 2.53 -27.88 -0.07 0.81 16 4 H 0.09 0.52 7.57 -51.93 -0.39 0.13 16 5 C 0.52 5.56 7.28 -10.99 -0.08 5.48 16 6 O -0.51 -7.76 17.24 -14.31 -0.25 -8.00 16 7 N -0.64 -5.38 3.59 -178.34 -0.64 -6.02 16 8 C 0.10 0.94 8.64 -2.97 -0.03 0.92 16 9 C 0.11 0.91 5.14 -70.16 -0.36 0.55 16 10 N -0.29 -3.64 3.54 -56.31 -0.20 -3.84 16 11 C -0.05 -0.62 10.72 -17.05 -0.18 -0.81 16 12 C 0.00 0.00 6.62 -82.77 -0.55 -0.54 16 13 C 0.23 4.65 6.82 -5.20 -0.04 4.62 16 14 N -0.73 -18.51 5.59 -61.09 -0.34 -18.85 16 15 C -0.24 -6.64 9.99 -15.06 -0.15 -6.79 16 16 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 17 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 18 N -0.93 -28.43 13.06 55.49 0.72 -27.70 16 19 Si 0.91 22.27 29.55 -169.99 -5.02 17.25 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 22 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 23 N -0.25 -4.84 12.41 33.29 0.41 -4.43 16 24 N -0.09 -1.47 13.16 60.35 0.79 -0.68 16 25 C 0.10 0.54 7.76 -2.85 -0.02 0.52 16 26 C -0.16 -0.95 4.75 -90.62 -0.43 -1.38 16 27 C -0.17 -0.64 8.62 -26.70 -0.23 -0.87 16 28 C -0.15 -0.75 10.06 -26.69 -0.27 -1.02 16 29 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.05 0.39 8.11 -51.93 -0.42 -0.03 16 31 H 0.04 0.24 8.14 -51.93 -0.42 -0.19 16 32 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.15 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.19 1.81 6.73 -52.49 -0.35 1.45 16 36 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.39 10.64 7.66 -40.82 -0.31 10.33 16 39 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 40 H 0.10 0.51 6.31 -51.93 -0.33 0.18 16 41 H 0.11 0.36 6.02 -51.93 -0.31 0.05 16 42 H 0.11 0.75 8.07 -51.93 -0.42 0.33 16 43 H 0.10 0.29 8.03 -51.93 -0.42 -0.13 16 44 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 45 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 46 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 LS Contribution 390.43 15.07 5.88 5.88 Total: -1.00 -37.32 390.43 -7.31 -44.63 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -6.73 Total: 3.44 kcal Atomic # 6 Polarization: 3.70 SS G_CDS: -1.41 Total: 2.29 kcal Atomic # 7 Polarization: -62.27 SS G_CDS: 0.75 Total: -61.52 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: -0.78 Total: -11.98 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -37.32 -7.31 -44.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105223799.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.191 kcal (2) G-P(sol) polarization free energy of solvation -37.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds