Wall clock time and date at job start Tue Mar 31 2020 18:31:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42899 * 113.99971 * 2 1 4 4 H 1.08994 * 109.46941 * 329.36162 * 3 2 1 5 5 C 1.50698 * 109.47326 * 89.36650 * 3 2 1 6 6 O 1.21283 * 119.99884 * 4.99616 * 5 3 2 7 7 N 1.34767 * 120.00188 * 185.00042 * 5 3 2 8 8 C 1.47583 * 134.49467 * 180.02562 * 7 5 3 9 9 C 1.53946 * 86.11730 * 155.35751 * 8 7 5 10 10 N 1.46494 * 113.74134 * 137.95445 * 9 8 7 11 11 C 1.35318 * 125.87007 * 276.92117 * 10 9 8 12 12 C 1.35345 * 106.17787 * 180.20633 * 11 10 9 13 13 C 1.50702 * 126.75222 * 179.77462 * 12 11 10 14 14 N 1.46494 * 109.47121 * 94.99939 * 13 12 11 15 15 C 1.36938 * 120.00335 * 179.97438 * 14 13 12 16 16 H 1.08001 * 119.99557 * 0.02562 * 15 14 13 17 17 C 1.38814 * 120.00032 * 180.02562 * 15 14 13 18 18 N 1.31614 * 119.99997 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99659 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47209 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47185 * 119.99841 * 19 17 15 22 22 H 1.48498 * 109.46772 * 239.99894 * 19 17 15 23 23 N 1.33781 * 106.49713 * 359.64595 * 12 11 10 24 24 N 1.28628 * 108.88205 * 0.36567 * 23 12 11 25 25 C 1.47816 * 134.45697 * 359.86162 * 7 5 3 26 26 C 1.53003 * 109.46871 * 209.36602 * 3 2 1 27 27 C 1.52994 * 117.50007 * 123.40817 * 26 3 2 28 28 C 1.52999 * 117.50153 * 54.74580 * 26 3 2 29 29 H 1.08999 * 109.47249 * 184.81701 * 1 2 3 30 30 H 1.09006 * 109.46952 * 304.81020 * 1 2 3 31 31 H 1.09000 * 109.47106 * 64.80908 * 1 2 3 32 32 H 1.09000 * 113.76803 * 41.05423 * 8 7 5 33 33 H 1.08995 * 113.87150 * 269.66925 * 8 7 5 34 34 H 1.09007 * 113.73944 * 269.15474 * 9 8 7 35 35 H 1.07998 * 126.90674 * 359.94354 * 11 10 9 36 36 H 1.09005 * 109.46807 * 215.00143 * 13 12 11 37 37 H 1.09001 * 109.46782 * 334.99998 * 13 12 11 38 38 H 0.97006 * 120.00019 * 0.02562 * 14 13 12 39 39 H 0.97005 * 119.99528 * 180.02562 * 18 17 15 40 40 H 1.08995 * 113.76861 * 90.38111 * 25 7 5 41 41 H 1.08998 * 113.83451 * 318.92157 * 25 7 5 42 42 H 1.09001 * 115.54688 * 269.07891 * 26 3 2 43 43 H 1.08997 * 117.50269 * 359.97438 * 27 26 3 44 44 H 1.09002 * 117.49831 * 145.01840 * 27 26 3 45 45 H 1.09002 * 117.49902 * 214.98092 * 28 26 3 46 46 H 1.09001 * 117.49712 * 0.02562 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3502 1.9969 -0.5237 5 6 2.2002 1.7708 1.4207 6 8 1.9554 1.0212 2.3422 7 7 2.6420 3.0199 1.6673 8 6 2.9355 3.7904 2.8913 9 6 3.8879 4.6224 2.0135 10 7 3.8217 6.0627 2.2725 11 6 2.9136 6.9209 1.7528 12 6 3.2215 8.1419 2.2489 13 6 2.5062 9.4374 1.9645 14 7 1.5177 9.6904 3.0157 15 6 0.7419 10.8178 2.9690 16 1 0.8584 11.5203 2.1570 17 6 -0.1944 11.0578 3.9655 18 7 -0.3360 10.2020 4.9553 19 14 -1.2532 12.5954 3.9014 20 1 -0.9011 13.3890 2.6966 21 1 -2.6853 12.2080 3.8384 22 1 -1.0143 13.4119 5.1186 23 7 4.2842 7.9720 3.0437 24 7 4.6171 6.7296 3.0338 25 6 3.0299 4.1670 0.8196 26 6 3.3661 1.2600 -0.7074 27 6 3.5729 2.1968 -1.8992 28 6 3.4032 0.6928 -2.1279 29 1 -0.3634 -1.0240 0.0863 30 1 -0.3633 0.5867 0.8438 31 1 -0.3633 0.4374 -0.9299 32 1 3.4424 3.2119 3.6636 33 1 2.0841 4.3542 3.2724 34 1 4.9089 4.2413 1.9905 35 1 2.1080 6.6805 1.0749 36 1 3.2283 10.2536 1.9406 37 1 2.0021 9.3700 1.0004 38 1 1.4133 9.0597 3.7452 39 1 -0.9905 10.3695 5.6513 40 1 2.2052 4.8413 0.5887 41 1 3.6120 3.8886 -0.0589 42 1 4.2251 1.0654 -0.0652 43 1 2.7429 2.8452 -2.1796 44 1 4.5681 2.6182 -2.0413 45 1 4.2868 0.1254 -2.4203 46 1 2.4616 0.3524 -2.5586 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105223799.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:41 Heat of formation + Delta-G solvation = 87.262472 kcal Electronic energy + Delta-G solvation = -28548.900233 eV Core-core repulsion = 24478.523235 eV Total energy + Delta-G solvation = -4070.376998 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -44.31278 -41.75097 -39.94671 -38.50572 -37.26453 -36.77729 -34.78573 -33.57551 -31.61877 -31.31118 -29.15433 -27.89312 -27.52846 -26.81103 -24.94022 -24.69151 -23.21965 -22.51455 -22.14711 -21.74882 -20.32077 -19.43266 -18.95991 -18.34252 -17.93358 -17.30641 -17.13443 -16.85383 -16.55232 -16.13264 -15.85534 -15.63415 -15.31257 -15.26624 -15.06955 -14.83849 -14.44473 -14.29163 -14.02664 -13.92693 -13.77238 -13.41007 -12.97060 -12.80005 -12.67851 -12.65455 -12.49291 -12.39704 -12.22944 -12.02792 -11.96922 -11.85092 -11.72974 -11.37228 -11.14404 -11.05724 -10.95297 -10.47543 -10.21084 -10.05306 -8.99434 -7.91927 -5.21683 0.56965 0.99895 1.27735 1.47475 1.51899 1.53884 1.62806 1.71623 2.39263 2.60918 2.74849 2.89958 3.20278 3.36679 3.42591 3.55204 3.62877 3.70898 3.79652 3.94535 3.98546 4.11529 4.12787 4.20052 4.25662 4.31255 4.32887 4.37406 4.44584 4.49525 4.53910 4.56427 4.65841 4.77735 4.85746 4.90599 5.04484 5.15884 5.17762 5.21787 5.30794 5.54012 5.64220 5.91229 6.28130 6.30615 6.85439 7.35115 7.52800 8.07462 8.32027 9.32204 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.014589 B = 0.002332 C = 0.002208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.793193 B =12001.578445 C =12677.610967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.377 6.377 3 C 0.115 3.885 4 H 0.114 0.886 5 C 0.520 3.480 6 O -0.571 6.571 7 N -0.635 5.635 8 C 0.094 3.906 9 C 0.113 3.887 10 N -0.277 5.277 11 C -0.016 4.016 12 C -0.035 4.035 13 C 0.234 3.766 14 N -0.740 5.740 15 C -0.238 4.238 16 H 0.086 0.914 17 C -0.080 4.080 18 N -0.974 5.974 19 Si 0.976 3.024 20 H -0.260 1.260 21 H -0.293 1.293 22 H -0.299 1.299 23 N -0.297 5.297 24 N -0.108 5.108 25 C 0.108 3.892 26 C -0.174 4.174 27 C -0.151 4.151 28 C -0.160 4.160 29 H 0.098 0.902 30 H 0.030 0.970 31 H 0.070 0.930 32 H 0.096 0.904 33 H 0.088 0.912 34 H 0.167 0.833 35 H 0.231 0.769 36 H 0.029 0.971 37 H 0.068 0.932 38 H 0.370 0.630 39 H 0.249 0.751 40 H 0.122 0.878 41 H 0.141 0.859 42 H 0.104 0.896 43 H 0.117 0.883 44 H 0.120 0.880 45 H 0.103 0.897 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.092 -21.378 -20.871 30.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.294 6.294 3 C 0.054 3.946 4 H 0.131 0.869 5 C 0.311 3.689 6 O -0.449 6.449 7 N -0.372 5.372 8 C -0.030 4.030 9 C 0.011 3.989 10 N -0.071 5.071 11 C -0.167 4.167 12 C -0.173 4.173 13 C 0.106 3.894 14 N -0.383 5.383 15 C -0.369 4.369 16 H 0.104 0.896 17 C -0.271 4.271 18 N -0.625 5.625 19 Si 0.805 3.195 20 H -0.184 1.184 21 H -0.220 1.220 22 H -0.227 1.227 23 N -0.164 5.164 24 N -0.086 5.086 25 C -0.014 4.014 26 C -0.193 4.193 27 C -0.188 4.188 28 C -0.197 4.197 29 H 0.117 0.883 30 H 0.048 0.952 31 H 0.088 0.912 32 H 0.114 0.886 33 H 0.106 0.894 34 H 0.185 0.815 35 H 0.248 0.752 36 H 0.047 0.953 37 H 0.086 0.914 38 H 0.201 0.799 39 H 0.058 0.942 40 H 0.140 0.860 41 H 0.159 0.841 42 H 0.122 0.878 43 H 0.135 0.865 44 H 0.138 0.862 45 H 0.121 0.879 46 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 8.189 -22.119 -19.601 30.667 hybrid contribution -1.809 0.610 0.786 2.065 sum 6.380 -21.508 -18.814 29.280 Atomic orbital electron populations 1.23036 0.79433 1.04126 1.00693 1.88001 1.21360 1.25916 1.94161 1.21613 0.96751 0.86763 0.89509 0.86878 1.21647 0.74916 0.79415 0.92967 1.90735 1.51600 1.54569 1.48042 1.49688 1.66261 1.11017 1.10266 1.23618 0.97440 0.91172 0.90785 1.24060 1.04109 0.72400 0.98347 1.47384 1.19900 1.09777 1.30076 1.23755 0.99080 0.88470 1.05368 1.22302 0.97030 0.97783 1.00188 1.19012 0.89153 0.88785 0.92413 1.42544 1.42422 1.25685 1.27630 1.19736 1.11574 0.99151 1.06458 0.89572 1.25622 1.02162 1.01967 0.97394 1.69860 1.39179 1.38857 1.14599 0.85027 0.77988 0.79012 0.77453 1.18352 1.22011 1.22699 1.75067 1.14554 1.08151 1.18592 1.78212 1.17370 0.99198 1.13806 1.24038 0.97843 0.84724 0.94837 1.22028 0.94816 1.10441 0.92016 1.23353 1.05318 0.92998 0.97094 1.22939 1.04115 0.97153 0.95461 0.88313 0.95157 0.91180 0.88584 0.89431 0.81547 0.75226 0.95339 0.91434 0.79904 0.94211 0.85999 0.84139 0.87760 0.86500 0.86211 0.87870 0.88342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 10.79 113.37 1.22 1.54 16 2 O -0.38 -7.06 9.70 -129.99 -1.26 -8.33 16 3 C 0.11 1.59 2.53 29.85 0.08 1.67 16 4 H 0.11 0.94 7.57 -2.39 -0.02 0.93 16 5 C 0.52 10.60 7.28 87.66 0.64 11.24 16 6 O -0.57 -17.79 17.24 15.95 0.27 -17.52 16 7 N -0.63 -9.41 3.59 -836.54 -3.01 -12.42 16 8 C 0.09 1.62 8.64 86.49 0.75 2.37 16 9 C 0.11 1.47 5.14 46.74 0.24 1.71 16 10 N -0.28 -6.20 3.54 -332.07 -1.18 -7.38 16 11 C -0.02 -0.37 10.72 83.49 0.89 0.53 16 12 C -0.03 -1.20 6.62 41.59 0.28 -0.92 16 13 C 0.23 9.13 6.82 85.63 0.58 9.71 16 14 N -0.74 -37.62 5.59 -347.18 -1.94 -39.57 16 15 C -0.24 -13.02 9.99 84.03 0.84 -12.18 16 16 H 0.09 4.41 7.83 -2.91 -0.02 4.39 16 17 C -0.08 -4.57 5.50 84.86 0.47 -4.10 16 18 N -0.97 -60.53 13.06 21.65 0.28 -60.25 16 19 Si 0.98 45.79 29.55 68.60 2.03 47.82 16 20 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 21 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 22 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 23 N -0.30 -11.49 12.41 -48.60 -0.60 -12.09 16 24 N -0.11 -3.45 13.16 37.02 0.49 -2.97 16 25 C 0.11 0.75 7.76 86.43 0.67 1.42 16 26 C -0.17 -1.64 4.75 -10.79 -0.05 -1.69 16 27 C -0.15 -0.45 8.62 30.62 0.26 -0.18 16 28 C -0.16 -1.12 10.06 30.62 0.31 -0.82 16 29 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.03 0.51 8.11 -2.38 -0.02 0.49 16 31 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.09 1.77 8.14 -2.39 -0.02 1.76 16 34 H 0.17 1.56 8.14 -2.38 -0.02 1.55 16 35 H 0.23 3.23 6.73 -2.91 -0.02 3.21 16 36 H 0.03 1.17 8.14 -2.38 -0.02 1.15 16 37 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 38 H 0.37 20.78 7.66 -92.70 -0.71 20.07 16 39 H 0.25 15.02 8.31 -92.70 -0.77 14.25 16 40 H 0.12 0.51 6.31 -2.39 -0.02 0.50 16 41 H 0.14 0.15 6.02 -2.39 -0.01 0.13 16 42 H 0.10 1.19 8.07 -2.39 -0.02 1.17 16 43 H 0.12 0.01 8.03 -2.39 -0.02 -0.01 16 44 H 0.12 0.06 8.14 -2.39 -0.02 0.04 16 45 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 46 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 Total: -1.00 -85.34 390.43 2.56 -82.78 By element: Atomic # 1 Polarization: 19.33 SS G_CDS: 0.30 Total: 19.63 kcal Atomic # 6 Polarization: 3.11 SS G_CDS: 7.18 Total: 10.29 kcal Atomic # 7 Polarization: -128.72 SS G_CDS: -5.96 Total: -134.68 kcal Atomic # 8 Polarization: -24.86 SS G_CDS: -0.99 Total: -25.84 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.82 kcal Total: -85.34 2.56 -82.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105223799.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.046 kcal (2) G-P(sol) polarization free energy of solvation -85.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds