Wall clock time and date at job start Tue Mar 31 2020 18:27:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42891 * 113.99952 * 2 1 4 4 C 1.53785 * 113.61463 * 209.99855 * 3 2 1 5 5 C 1.53778 * 87.08121 * 220.02027 * 4 3 2 6 6 C 1.50699 * 113.61267 * 139.98533 * 5 4 3 7 7 O 1.21282 * 120.00049 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00226 * 179.97438 * 6 5 4 9 9 C 1.47578 * 134.49456 * 179.97438 * 8 6 5 10 10 C 1.53947 * 86.11667 * 155.36065 * 9 8 6 11 11 N 1.46506 * 113.73920 * 137.95217 * 10 9 8 12 12 C 1.35312 * 125.86758 * 274.71512 * 11 10 9 13 13 C 1.35350 * 106.16996 * 179.90626 * 12 11 10 14 14 C 1.50701 * 126.74947 * 180.12792 * 13 12 11 15 15 N 1.46501 * 109.47472 * 95.24826 * 14 13 12 16 16 C 1.36934 * 120.00294 * 180.02562 * 15 14 13 17 17 H 1.08000 * 119.99932 * 359.97438 * 16 15 14 18 18 C 1.38812 * 120.00237 * 179.97438 * 16 15 14 19 19 N 1.31617 * 119.99673 * 359.97438 * 18 16 15 20 20 Si 1.86791 * 120.00286 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.47085 * 90.00101 * 20 18 16 22 22 H 1.48494 * 109.47484 * 210.00007 * 20 18 16 23 23 H 1.48502 * 109.47446 * 330.00241 * 20 18 16 24 24 N 1.33773 * 106.50091 * 0.35256 * 13 12 11 25 25 N 1.28631 * 108.88140 * 359.77570 * 24 13 12 26 26 C 1.47580 * 134.49108 * 0.02562 * 8 6 5 27 27 C 1.53774 * 87.08245 * 25.43430 * 5 4 3 28 28 H 1.08999 * 109.47042 * 299.99536 * 1 2 3 29 29 H 1.08993 * 109.47492 * 59.99593 * 1 2 3 30 30 H 1.09006 * 109.47251 * 179.97438 * 1 2 3 31 31 H 1.08995 * 112.85170 * 341.20304 * 3 2 1 32 32 H 1.09004 * 113.60809 * 105.47510 * 4 3 2 33 33 H 1.08997 * 113.68942 * 334.58466 * 4 3 2 34 34 H 1.09001 * 113.61467 * 270.80105 * 5 4 3 35 35 H 1.09004 * 113.76602 * 41.06236 * 9 8 6 36 36 H 1.09003 * 113.87496 * 269.67545 * 9 8 6 37 37 H 1.08999 * 113.74259 * 269.15774 * 10 9 8 38 38 H 1.07995 * 126.91165 * 0.02562 * 12 11 10 39 39 H 1.09007 * 109.47341 * 215.24822 * 14 13 12 40 40 H 1.09002 * 109.47136 * 335.24255 * 14 13 12 41 41 H 0.96998 * 119.99649 * 359.97438 * 15 14 13 42 42 H 0.96999 * 120.00497 * 179.97438 * 19 18 16 43 43 H 1.08996 * 113.77201 * 90.33634 * 26 8 6 44 44 H 1.09002 * 113.76575 * 318.93589 * 26 8 6 45 45 H 1.09004 * 113.61773 * 89.11680 * 27 5 4 46 46 H 1.09001 * 113.61374 * 220.01770 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.3756 1.3718 -0.7045 5 6 3.8227 2.3180 0.4222 6 6 5.2328 2.0717 0.8934 7 8 5.8964 1.1918 0.3870 8 7 5.7565 2.8290 1.8776 9 6 7.0595 2.8696 2.5694 10 6 6.7353 4.3441 2.8709 11 7 7.0789 4.7567 4.2340 12 6 6.2968 4.6081 5.3282 13 6 6.9992 5.1197 6.3659 14 6 6.5598 5.1878 7.8058 15 7 7.0874 4.0303 8.5326 16 6 6.8158 3.8771 9.8660 17 1 6.2130 4.6098 10.3819 18 6 7.3152 2.7801 10.5545 19 7 8.0494 1.8870 9.9256 20 14 6.9453 2.5716 12.3735 21 1 5.6926 1.7910 12.5376 22 1 8.0669 1.8506 13.0273 23 1 6.7822 3.9071 13.0019 24 7 8.1580 5.5577 5.8611 25 7 8.1742 5.3279 4.5956 26 6 5.2570 3.9503 2.6969 27 6 2.7535 1.6488 1.3017 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 1.3137 2.0788 -0.3236 32 1 3.3383 1.8471 -1.6848 33 1 3.9098 0.4218 -0.7147 34 1 3.6235 3.3693 0.2143 35 1 7.9136 2.7344 1.9057 36 1 7.1072 2.2398 3.4577 37 1 7.0993 5.0374 2.1126 38 1 5.3113 4.1679 5.3661 39 1 6.9384 6.1043 8.2583 40 1 5.4709 5.1817 7.8541 41 1 7.6284 3.3721 8.0691 42 1 8.3987 1.1206 10.4067 43 1 4.7739 3.6371 3.6224 44 1 4.6715 4.6781 2.1351 45 1 3.1167 0.7739 1.8410 46 1 2.2141 2.3476 1.9412 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105266228.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:51 Heat of formation + Delta-G solvation = 106.288311 kcal Electronic energy + Delta-G solvation = -28002.858619 eV Core-core repulsion = 23933.306643 eV Total energy + Delta-G solvation = -4069.551976 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.15313 -41.09969 -39.72181 -38.09598 -36.16475 -35.02026 -33.53306 -31.87265 -30.02375 -29.84584 -27.65900 -27.03906 -26.25358 -26.04594 -25.50745 -23.75115 -22.84356 -21.30900 -20.83715 -20.37392 -19.37441 -18.24606 -17.80504 -17.08441 -16.90463 -16.52982 -16.15869 -15.76860 -15.55526 -15.13115 -14.94713 -14.64768 -14.46417 -14.00258 -13.79027 -13.61599 -13.30446 -13.19745 -12.96540 -12.95293 -12.67113 -12.55015 -12.30976 -12.09306 -11.77112 -11.69217 -11.38353 -11.31191 -11.24101 -10.91601 -10.81578 -10.55335 -10.21809 -10.10178 -9.96082 -9.92061 -9.74900 -9.32561 -8.93490 -8.87983 -6.93288 -5.74815 -3.04796 1.68024 1.87653 2.09101 2.58506 2.84363 3.28873 3.43282 3.45059 3.50352 3.52548 3.77390 3.90244 3.99902 4.19001 4.22381 4.28245 4.34616 4.60220 4.62832 4.68269 4.72094 4.80998 4.89675 4.93622 5.08307 5.08874 5.15922 5.20257 5.24440 5.27797 5.32368 5.43402 5.45068 5.53005 5.60095 5.74875 5.75642 6.15127 6.34287 6.60551 6.65217 6.74258 6.75599 7.06229 7.66117 7.70162 8.42231 8.76056 9.54081 10.09334 10.44998 11.47862 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011458 B = 0.002275 C = 0.002019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2443.096532 B =12307.171231 C =13862.373615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.374 6.374 3 C 0.063 3.937 4 C -0.114 4.114 5 C -0.132 4.132 6 C 0.556 3.444 7 O -0.526 6.526 8 N -0.642 5.642 9 C 0.103 3.897 10 C 0.113 3.887 11 N -0.295 5.295 12 C -0.047 4.047 13 C 0.000 4.000 14 C 0.232 3.768 15 N -0.726 5.726 16 C -0.241 4.241 17 H 0.073 0.927 18 C -0.013 4.013 19 N -0.932 5.932 20 Si 0.909 3.091 21 H -0.290 1.290 22 H -0.292 1.292 23 H -0.281 1.281 24 N -0.250 5.250 25 N -0.090 5.090 26 C 0.101 3.899 27 C -0.138 4.138 28 H 0.043 0.957 29 H 0.042 0.958 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.079 0.921 33 H 0.106 0.894 34 H 0.117 0.883 35 H 0.101 0.899 36 H 0.100 0.900 37 H 0.145 0.855 38 H 0.188 0.812 39 H 0.040 0.960 40 H 0.038 0.962 41 H 0.385 0.615 42 H 0.255 0.745 43 H 0.104 0.896 44 H 0.103 0.897 45 H 0.097 0.903 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.067 3.479 -25.043 29.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.292 6.292 3 C 0.005 3.995 4 C -0.152 4.152 5 C -0.153 4.153 6 C 0.346 3.654 7 O -0.400 6.400 8 N -0.380 5.380 9 C -0.020 4.020 10 C 0.009 3.991 11 N -0.090 5.090 12 C -0.196 4.196 13 C -0.138 4.138 14 C 0.103 3.897 15 N -0.371 5.371 16 C -0.372 4.372 17 H 0.091 0.909 18 C -0.209 4.209 19 N -0.580 5.580 20 Si 0.740 3.260 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.207 1.207 24 N -0.118 5.118 25 N -0.069 5.069 26 C -0.023 4.023 27 C -0.176 4.176 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.105 0.895 31 H 0.110 0.890 32 H 0.098 0.902 33 H 0.125 0.875 34 H 0.135 0.865 35 H 0.120 0.880 36 H 0.118 0.882 37 H 0.163 0.837 38 H 0.205 0.795 39 H 0.057 0.943 40 H 0.055 0.945 41 H 0.219 0.781 42 H 0.065 0.935 43 H 0.122 0.878 44 H 0.122 0.878 45 H 0.115 0.885 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -14.370 3.264 -25.807 29.718 hybrid contribution -1.222 -0.606 1.187 1.808 sum -15.592 2.657 -24.620 29.263 Atomic orbital electron populations 1.22824 0.80997 1.03016 0.99973 1.87994 1.19787 1.26942 1.94474 1.23658 0.94008 0.85705 0.96174 1.23157 0.94561 1.00625 0.96858 1.22461 0.91280 1.01698 0.99910 1.20010 0.87917 0.79610 0.77845 1.90751 1.61696 1.31276 1.56320 1.49667 1.16789 1.35833 1.35673 1.23618 0.87844 0.93005 0.97573 1.23692 0.96996 0.97593 0.80832 1.47114 1.12940 1.40676 1.08230 1.23312 1.01181 1.08984 0.86155 1.22495 0.91531 1.01361 0.98376 1.18964 0.96051 0.92866 0.81837 1.42300 1.62551 1.24423 1.07798 1.19217 1.26742 1.05750 0.85451 0.90867 1.24766 1.00366 0.97536 0.98242 1.69676 1.39191 1.13593 1.35514 0.86158 0.77224 0.77595 0.84998 1.21738 1.21785 1.20652 1.75132 1.19221 1.18059 0.99348 1.78305 1.05527 1.13834 1.09197 1.23639 0.94594 0.87778 0.96326 1.23461 0.95639 1.01180 0.97365 0.93858 0.93957 0.89542 0.88993 0.90190 0.87532 0.86530 0.88049 0.88197 0.83719 0.79461 0.94251 0.94451 0.78103 0.93475 0.87802 0.87834 0.88480 0.90118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 10.85 101.05 1.10 1.25 16 2 O -0.37 -3.19 10.71 -35.23 -0.38 -3.57 16 3 C 0.06 0.40 4.31 -25.92 -0.11 0.29 16 4 C -0.11 -0.83 7.24 -25.92 -0.19 -1.01 16 5 C -0.13 -0.85 3.90 -90.97 -0.35 -1.21 16 6 C 0.56 5.52 7.58 -10.99 -0.08 5.44 16 7 O -0.53 -7.50 16.63 5.56 0.09 -7.40 16 8 N -0.64 -5.30 3.61 -178.52 -0.64 -5.95 16 9 C 0.10 0.95 8.63 -2.98 -0.03 0.92 16 10 C 0.11 0.89 5.16 -70.12 -0.36 0.53 16 11 N -0.29 -3.69 3.54 -56.28 -0.20 -3.89 16 12 C -0.05 -0.63 10.71 -17.05 -0.18 -0.81 16 13 C 0.00 0.00 6.62 -82.78 -0.55 -0.55 16 14 C 0.23 4.69 6.82 -5.19 -0.04 4.66 16 15 N -0.73 -18.64 5.59 -61.08 -0.34 -18.98 16 16 C -0.24 -6.71 9.99 -15.06 -0.15 -6.86 16 17 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 18 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 19 N -0.93 -28.59 13.06 55.49 0.72 -27.87 16 20 Si 0.91 22.39 29.55 -169.99 -5.02 17.37 16 21 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 22 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 N -0.25 -4.88 12.41 33.29 0.41 -4.47 16 25 N -0.09 -1.50 13.16 60.35 0.79 -0.70 16 26 C 0.10 0.55 7.97 -2.96 -0.02 0.53 16 27 C -0.14 -0.88 7.46 -25.92 -0.19 -1.08 16 28 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 29 H 0.04 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.09 0.37 7.87 -51.93 -0.41 -0.04 16 32 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.11 1.06 7.43 -51.93 -0.39 0.67 16 34 H 0.12 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.10 1.07 8.14 -51.93 -0.42 0.64 16 37 H 0.15 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.19 1.85 6.72 -52.49 -0.35 1.49 16 39 H 0.04 0.82 8.14 -51.92 -0.42 0.40 16 40 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.39 10.72 7.66 -40.82 -0.31 10.40 16 42 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 43 H 0.10 0.53 6.31 -51.93 -0.33 0.21 16 44 H 0.10 0.27 8.14 -51.93 -0.42 -0.16 16 45 H 0.10 0.84 8.09 -51.93 -0.42 0.42 16 46 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 390.24 15.07 5.88 5.88 Total: -1.00 -37.50 390.24 -6.76 -44.27 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -6.83 Total: 3.68 kcal Atomic # 6 Polarization: 2.89 SS G_CDS: -1.26 Total: 1.63 kcal Atomic # 7 Polarization: -62.60 SS G_CDS: 0.75 Total: -61.85 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: -0.29 Total: -10.97 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -37.50 -6.76 -44.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105266228.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.557 kcal (2) G-P(sol) polarization free energy of solvation -37.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.268 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds