Wall clock time and date at job start Tue Mar 31 2020 18:27:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42891 * 113.99952 * 2 1 4 4 C 1.53785 * 113.61463 * 209.99855 * 3 2 1 5 5 C 1.53778 * 87.08121 * 220.02027 * 4 3 2 6 6 C 1.50699 * 113.61267 * 139.98533 * 5 4 3 7 7 O 1.21282 * 120.00049 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00226 * 179.97438 * 6 5 4 9 9 C 1.47578 * 134.49456 * 179.97438 * 8 6 5 10 10 C 1.53947 * 86.11667 * 155.36065 * 9 8 6 11 11 N 1.46506 * 113.73920 * 137.95217 * 10 9 8 12 12 C 1.35312 * 125.86758 * 274.71512 * 11 10 9 13 13 C 1.35350 * 106.16996 * 179.90626 * 12 11 10 14 14 C 1.50701 * 126.74947 * 180.12792 * 13 12 11 15 15 N 1.46501 * 109.47472 * 95.24826 * 14 13 12 16 16 C 1.36934 * 120.00294 * 180.02562 * 15 14 13 17 17 H 1.08000 * 119.99932 * 359.97438 * 16 15 14 18 18 C 1.38812 * 120.00237 * 179.97438 * 16 15 14 19 19 N 1.31617 * 119.99673 * 359.97438 * 18 16 15 20 20 Si 1.86791 * 120.00286 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.47085 * 90.00101 * 20 18 16 22 22 H 1.48494 * 109.47484 * 210.00007 * 20 18 16 23 23 H 1.48502 * 109.47446 * 330.00241 * 20 18 16 24 24 N 1.33773 * 106.50091 * 0.35256 * 13 12 11 25 25 N 1.28631 * 108.88140 * 359.77570 * 24 13 12 26 26 C 1.47580 * 134.49108 * 0.02562 * 8 6 5 27 27 C 1.53774 * 87.08245 * 25.43430 * 5 4 3 28 28 H 1.08999 * 109.47042 * 299.99536 * 1 2 3 29 29 H 1.08993 * 109.47492 * 59.99593 * 1 2 3 30 30 H 1.09006 * 109.47251 * 179.97438 * 1 2 3 31 31 H 1.08995 * 112.85170 * 341.20304 * 3 2 1 32 32 H 1.09004 * 113.60809 * 105.47510 * 4 3 2 33 33 H 1.08997 * 113.68942 * 334.58466 * 4 3 2 34 34 H 1.09001 * 113.61467 * 270.80105 * 5 4 3 35 35 H 1.09004 * 113.76602 * 41.06236 * 9 8 6 36 36 H 1.09003 * 113.87496 * 269.67545 * 9 8 6 37 37 H 1.08999 * 113.74259 * 269.15774 * 10 9 8 38 38 H 1.07995 * 126.91165 * 0.02562 * 12 11 10 39 39 H 1.09007 * 109.47341 * 215.24822 * 14 13 12 40 40 H 1.09002 * 109.47136 * 335.24255 * 14 13 12 41 41 H 0.96998 * 119.99649 * 359.97438 * 15 14 13 42 42 H 0.96999 * 120.00497 * 179.97438 * 19 18 16 43 43 H 1.08996 * 113.77201 * 90.33634 * 26 8 6 44 44 H 1.09002 * 113.76575 * 318.93589 * 26 8 6 45 45 H 1.09004 * 113.61773 * 89.11680 * 27 5 4 46 46 H 1.09001 * 113.61374 * 220.01770 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.3756 1.3718 -0.7045 5 6 3.8227 2.3180 0.4222 6 6 5.2328 2.0717 0.8934 7 8 5.8964 1.1918 0.3870 8 7 5.7565 2.8290 1.8776 9 6 7.0595 2.8696 2.5694 10 6 6.7353 4.3441 2.8709 11 7 7.0789 4.7567 4.2340 12 6 6.2968 4.6081 5.3282 13 6 6.9992 5.1197 6.3659 14 6 6.5598 5.1878 7.8058 15 7 7.0874 4.0303 8.5326 16 6 6.8158 3.8771 9.8660 17 1 6.2130 4.6098 10.3819 18 6 7.3152 2.7801 10.5545 19 7 8.0494 1.8870 9.9256 20 14 6.9453 2.5716 12.3735 21 1 5.6926 1.7910 12.5376 22 1 8.0669 1.8506 13.0273 23 1 6.7822 3.9071 13.0019 24 7 8.1580 5.5577 5.8611 25 7 8.1742 5.3279 4.5956 26 6 5.2570 3.9503 2.6969 27 6 2.7535 1.6488 1.3017 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 1.3137 2.0788 -0.3236 32 1 3.3383 1.8471 -1.6848 33 1 3.9098 0.4218 -0.7147 34 1 3.6235 3.3693 0.2143 35 1 7.9136 2.7344 1.9057 36 1 7.1072 2.2398 3.4577 37 1 7.0993 5.0374 2.1126 38 1 5.3113 4.1679 5.3661 39 1 6.9384 6.1043 8.2583 40 1 5.4709 5.1817 7.8541 41 1 7.6284 3.3721 8.0691 42 1 8.3987 1.1206 10.4067 43 1 4.7739 3.6371 3.6224 44 1 4.6715 4.6781 2.1351 45 1 3.1167 0.7739 1.8410 46 1 2.2141 2.3476 1.9412 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105266228.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:51 Heat of formation + Delta-G solvation = 77.228886 kcal Electronic energy + Delta-G solvation = -28004.118731 eV Core-core repulsion = 23933.306643 eV Total energy + Delta-G solvation = -4070.812087 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -44.31076 -41.77807 -40.31066 -38.83610 -36.79192 -36.72818 -34.77996 -33.57261 -31.62433 -30.71167 -28.14903 -27.83904 -27.40141 -26.74522 -26.26398 -24.78979 -24.57344 -22.38728 -21.91665 -21.02205 -19.99157 -19.39909 -18.85335 -18.42733 -17.57907 -17.40740 -16.88546 -16.57897 -16.45266 -16.08785 -15.99645 -15.74628 -15.51525 -15.16396 -15.06031 -14.73111 -14.32811 -14.24095 -13.92038 -13.84481 -13.52561 -13.42406 -13.09918 -12.96344 -12.80400 -12.75896 -12.59088 -12.47388 -12.14988 -12.08023 -11.86938 -11.86638 -11.81460 -11.68759 -11.08696 -10.94921 -10.90337 -10.42379 -10.21268 -10.02219 -9.00067 -7.92189 -5.22180 0.57308 1.06652 1.37050 1.46976 1.52678 1.53358 1.61895 1.82876 2.60708 2.76333 2.83028 3.16008 3.37346 3.40302 3.46193 3.54124 3.66116 3.73736 3.75526 3.93402 3.97572 4.15365 4.20474 4.25267 4.32083 4.35090 4.40803 4.53253 4.55252 4.57729 4.60725 4.68340 4.71986 4.76784 4.89547 4.89930 4.96274 5.04523 5.15363 5.21242 5.23878 5.53087 5.65102 6.27604 6.34584 6.39910 6.93656 7.34508 7.52502 8.06902 8.31607 9.31793 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011458 B = 0.002275 C = 0.002019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2443.096532 B =12307.171231 C =13862.373615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.409 6.409 3 C 0.065 3.935 4 C -0.125 4.125 5 C -0.118 4.118 6 C 0.549 3.451 7 O -0.583 6.583 8 N -0.639 5.639 9 C 0.092 3.908 10 C 0.111 3.889 11 N -0.277 5.277 12 C -0.015 4.015 13 C -0.036 4.036 14 C 0.234 3.766 15 N -0.740 5.740 16 C -0.240 4.240 17 H 0.086 0.914 18 C -0.080 4.080 19 N -0.974 5.974 20 Si 0.978 3.022 21 H -0.283 1.283 22 H -0.301 1.301 23 H -0.266 1.266 24 N -0.297 5.297 25 N -0.109 5.109 26 C 0.112 3.888 27 C -0.136 4.136 28 H 0.053 0.947 29 H 0.057 0.943 30 H 0.086 0.914 31 H 0.126 0.874 32 H 0.096 0.904 33 H 0.067 0.933 34 H 0.161 0.839 35 H 0.095 0.905 36 H 0.081 0.919 37 H 0.169 0.831 38 H 0.231 0.769 39 H 0.029 0.971 40 H 0.067 0.933 41 H 0.370 0.630 42 H 0.249 0.751 43 H 0.115 0.885 44 H 0.151 0.849 45 H 0.064 0.936 46 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.482 5.580 -25.832 32.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.328 6.328 3 C 0.008 3.992 4 C -0.163 4.163 5 C -0.139 4.139 6 C 0.341 3.659 7 O -0.462 6.462 8 N -0.375 5.375 9 C -0.033 4.033 10 C 0.009 3.991 11 N -0.072 5.072 12 C -0.167 4.167 13 C -0.174 4.174 14 C 0.106 3.894 15 N -0.383 5.383 16 C -0.371 4.371 17 H 0.104 0.896 18 C -0.272 4.272 19 N -0.625 5.625 20 Si 0.806 3.194 21 H -0.210 1.210 22 H -0.228 1.228 23 H -0.191 1.191 24 N -0.164 5.164 25 N -0.087 5.087 26 C -0.010 4.010 27 C -0.174 4.174 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.104 0.896 31 H 0.144 0.856 32 H 0.115 0.885 33 H 0.085 0.915 34 H 0.178 0.822 35 H 0.114 0.886 36 H 0.099 0.901 37 H 0.186 0.814 38 H 0.247 0.753 39 H 0.047 0.953 40 H 0.085 0.915 41 H 0.201 0.799 42 H 0.058 0.942 43 H 0.133 0.867 44 H 0.169 0.831 45 H 0.083 0.917 46 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -17.820 5.442 -26.610 32.485 hybrid contribution -0.172 -1.261 1.299 1.819 sum -17.992 4.181 -25.311 31.335 Atomic orbital electron populations 1.22977 0.79542 1.03560 1.01204 1.87959 1.21593 1.28596 1.94631 1.23828 0.93926 0.85757 0.95729 1.23163 0.95328 0.99402 0.98439 1.22582 0.88494 1.03751 0.99037 1.20754 0.88959 0.78726 0.77450 1.90729 1.63374 1.33778 1.58300 1.49695 1.16440 1.36112 1.35220 1.23580 0.88768 0.93864 0.97057 1.24148 0.99329 0.96803 0.78850 1.47414 1.11525 1.38546 1.09683 1.23756 1.01902 1.06069 0.84937 1.22306 0.92515 1.04288 0.98330 1.19007 0.97184 0.90231 0.82931 1.42532 1.62551 1.25621 1.07579 1.19703 1.25430 1.05348 0.86628 0.89569 1.25641 1.01074 0.97749 1.02726 1.69855 1.41227 1.14330 1.37120 0.85073 0.76635 0.77912 0.79733 1.20979 1.22826 1.19087 1.75060 1.20672 1.19905 1.00757 1.78199 1.07154 1.15095 1.08256 1.23925 0.92968 0.87121 0.96994 1.23421 0.95705 1.00639 0.97677 0.92821 0.92400 0.89559 0.85638 0.88534 0.91467 0.82164 0.88640 0.90105 0.81374 0.75259 0.95335 0.91490 0.79926 0.94194 0.86668 0.83107 0.91691 0.87100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 10.85 113.37 1.23 1.44 16 2 O -0.41 -6.61 10.71 -148.98 -1.60 -8.20 16 3 C 0.07 0.67 4.31 31.12 0.13 0.80 16 4 C -0.13 -1.67 7.24 31.12 0.23 -1.45 16 5 C -0.12 -1.16 3.90 -11.02 -0.04 -1.21 16 6 C 0.55 10.24 7.58 87.66 0.66 10.91 16 7 O -0.58 -17.29 16.63 -3.04 -0.05 -17.34 16 8 N -0.64 -9.05 3.61 -837.10 -3.02 -12.07 16 9 C 0.09 1.61 8.63 86.48 0.75 2.35 16 10 C 0.11 1.42 5.16 46.76 0.24 1.66 16 11 N -0.28 -6.32 3.54 -331.97 -1.18 -7.50 16 12 C -0.02 -0.37 10.71 83.49 0.89 0.52 16 13 C -0.04 -1.27 6.62 41.60 0.28 -0.99 16 14 C 0.23 9.28 6.82 85.63 0.58 9.86 16 15 N -0.74 -38.11 5.59 -347.16 -1.94 -40.05 16 16 C -0.24 -13.27 9.99 84.03 0.84 -12.43 16 17 H 0.09 4.44 7.83 -2.91 -0.02 4.42 16 18 C -0.08 -4.64 5.50 84.86 0.47 -4.17 16 19 N -0.97 -61.12 13.06 21.65 0.28 -60.83 16 20 Si 0.98 46.16 29.55 68.60 2.03 48.19 16 21 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 22 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 23 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 24 N -0.30 -11.66 12.41 -48.60 -0.60 -12.26 16 25 N -0.11 -3.54 13.16 37.02 0.49 -3.06 16 26 C 0.11 0.68 7.97 86.49 0.69 1.37 16 27 C -0.14 -1.37 7.46 31.12 0.23 -1.14 16 28 H 0.05 0.35 8.14 -2.39 -0.02 0.33 16 29 H 0.06 0.32 8.14 -2.39 -0.02 0.30 16 30 H 0.09 0.72 8.14 -2.38 -0.02 0.70 16 31 H 0.13 0.44 7.87 -2.39 -0.02 0.42 16 32 H 0.10 0.90 8.14 -2.38 -0.02 0.88 16 33 H 0.07 1.44 7.43 -2.39 -0.02 1.43 16 34 H 0.16 0.21 8.14 -2.39 -0.02 0.19 16 35 H 0.10 1.77 8.14 -2.38 -0.02 1.75 16 36 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.17 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.23 3.39 6.72 -2.91 -0.02 3.37 16 39 H 0.03 1.19 8.14 -2.38 -0.02 1.17 16 40 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 41 H 0.37 21.03 7.66 -92.71 -0.71 20.32 16 42 H 0.25 15.19 8.31 -92.71 -0.77 14.42 16 43 H 0.12 0.53 6.31 -2.39 -0.02 0.52 16 44 H 0.15 -0.34 8.14 -2.39 -0.02 -0.36 16 45 H 0.06 1.09 8.09 -2.38 -0.02 1.07 16 46 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 Total: -1.00 -87.83 390.24 1.88 -85.95 By element: Atomic # 1 Polarization: 19.35 SS G_CDS: 0.29 Total: 19.65 kcal Atomic # 6 Polarization: 0.34 SS G_CDS: 7.18 Total: 7.52 kcal Atomic # 7 Polarization: -129.80 SS G_CDS: -5.97 Total: -135.77 kcal Atomic # 8 Polarization: -23.90 SS G_CDS: -1.65 Total: -25.54 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.19 kcal Total: -87.83 1.88 -85.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105266228.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.179 kcal (2) G-P(sol) polarization free energy of solvation -87.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.950 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds