Wall clock time and date at job start Tue Mar 31 2020 18:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 113.99968 * 2 1 4 4 H 1.09006 * 109.47210 * 22.74963 * 3 2 1 5 5 C 1.50696 * 109.46835 * 142.74701 * 3 2 1 6 6 O 1.21285 * 120.00505 * 5.00280 * 5 3 2 7 7 N 1.34782 * 119.99955 * 184.99807 * 5 3 2 8 8 C 1.46495 * 119.99935 * 180.02562 * 7 5 3 9 9 C 1.50706 * 109.47186 * 180.02562 * 8 7 5 10 10 C 1.35345 * 126.75497 * 94.99255 * 9 8 7 11 11 N 1.35318 * 106.17556 * 179.77802 * 10 9 8 12 12 C 1.46497 * 125.86902 * 180.20720 * 11 10 9 13 13 C 1.53947 * 113.74122 * 13.74232 * 12 11 10 14 14 N 1.47811 * 86.03794 * 222.08583 * 13 12 11 15 15 C 1.36938 * 134.45690 * 204.64707 * 14 13 12 16 16 H 1.08002 * 119.99640 * 173.67279 * 15 14 13 17 17 C 1.38805 * 119.99811 * 353.67090 * 15 14 13 18 18 N 1.31613 * 120.00527 * 5.07774 * 17 15 14 19 19 Si 1.86804 * 119.99968 * 185.07700 * 17 15 14 20 20 H 1.48502 * 109.47239 * 94.96818 * 19 17 15 21 21 H 1.48494 * 109.47340 * 214.96937 * 19 17 15 22 22 H 1.48500 * 109.46978 * 334.97022 * 19 17 15 23 23 C 1.47582 * 91.05027 * 24.54847 * 14 13 12 24 24 N 1.28710 * 108.26169 * 0.22868 * 11 10 9 25 25 N 1.28638 * 110.18234 * 359.97438 * 24 11 10 26 26 C 1.53001 * 109.47040 * 262.74661 * 3 2 1 27 27 C 1.52992 * 117.49838 * 11.36057 * 26 3 2 28 28 C 1.52992 * 117.50107 * 302.69940 * 26 3 2 29 29 H 1.09005 * 109.47152 * 62.99424 * 1 2 3 30 30 H 1.08994 * 109.47515 * 182.99119 * 1 2 3 31 31 H 1.08997 * 109.47248 * 302.99586 * 1 2 3 32 32 H 0.96995 * 119.99746 * 0.02562 * 7 5 3 33 33 H 1.08998 * 109.47500 * 60.00170 * 8 7 5 34 34 H 1.09006 * 109.47189 * 299.99491 * 8 7 5 35 35 H 1.07996 * 126.91188 * 0.04610 * 10 9 8 36 36 H 1.08996 * 112.94214 * 145.33233 * 12 11 10 37 37 H 1.09003 * 113.76823 * 336.34897 * 13 12 11 38 38 H 1.08993 * 113.77151 * 107.74450 * 13 12 11 39 39 H 0.97003 * 120.00477 * 180.02562 * 18 17 15 40 40 H 1.08998 * 113.77106 * 221.15400 * 23 14 13 41 41 H 1.09001 * 113.86736 * 89.77098 * 23 14 13 42 42 H 1.09007 * 115.54469 * 157.02546 * 26 3 2 43 43 H 1.09004 * 117.50376 * 359.97438 * 27 26 3 44 44 H 1.09006 * 117.49881 * 145.02247 * 27 26 3 45 45 H 1.08998 * 117.50042 * 214.98429 * 28 26 3 46 46 H 1.09005 * 117.49834 * 359.97438 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.2922 2.0229 0.3974 5 6 3.2477 1.3043 0.8601 6 8 3.6487 0.2672 1.3444 7 7 3.9089 2.4558 1.0910 8 6 5.1121 2.4546 1.9266 9 6 5.6555 3.8567 2.0269 10 6 5.4096 4.7521 3.0116 11 7 6.1063 5.8667 2.6902 12 6 6.1498 7.1064 3.4696 13 6 5.5918 6.9610 4.8971 14 7 4.9373 8.2656 4.6640 15 6 4.4910 9.2734 5.4766 16 1 4.1280 10.1944 5.0449 17 6 4.5051 9.1112 6.8551 18 7 5.0389 8.0313 7.3853 19 14 3.7663 10.4256 7.9578 20 1 2.3631 10.0661 8.2848 21 1 4.5573 10.5225 9.2108 22 1 3.7912 11.7332 7.2544 23 6 4.9603 8.0471 3.2046 24 7 6.7239 5.6507 1.5818 25 7 6.4739 4.4619 1.1588 26 6 2.3840 1.6973 -1.4310 27 6 1.8553 0.8173 -2.5653 28 6 3.3386 0.7734 -2.1899 29 1 -0.3634 0.4667 -0.9157 30 1 -0.3634 -1.0262 0.0536 31 1 -0.3633 0.5596 0.8619 32 1 3.5880 3.2853 0.7039 33 1 5.8642 1.8043 1.4799 34 1 4.8622 2.0902 2.9231 35 1 4.7865 4.6049 3.8814 36 1 7.1195 7.6020 3.4259 37 1 4.8924 6.1331 5.0131 38 1 6.3574 6.9845 5.6725 39 1 5.0484 7.9178 8.3486 40 1 5.2227 8.9363 2.6314 41 1 4.0755 7.5393 2.8207 42 1 2.4634 2.7679 -1.6197 43 1 1.2415 -0.0411 -2.2923 44 1 1.5873 1.3089 -3.5006 45 1 4.0459 1.2362 -2.8782 46 1 3.7007 -0.1134 -1.6696 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107165130.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:53 Heat of formation + Delta-G solvation = 109.772955 kcal Electronic energy + Delta-G solvation = -28355.684646 eV Core-core repulsion = 24286.283776 eV Total energy + Delta-G solvation = -4069.400870 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.10474 -40.36782 -38.45605 -38.22399 -36.19111 -35.18732 -33.44218 -32.05350 -31.42389 -29.44335 -27.99591 -26.96231 -25.88383 -25.26653 -24.41069 -22.67688 -21.98918 -21.87428 -21.11856 -20.25537 -19.66648 -17.90181 -17.33128 -17.26360 -16.81308 -16.66500 -16.08322 -15.42229 -15.19544 -15.15456 -14.86755 -14.80579 -14.52853 -14.11883 -13.70232 -13.51197 -13.20615 -12.94642 -12.92272 -12.31887 -12.16630 -12.07794 -11.88279 -11.71020 -11.65780 -11.41753 -11.20966 -11.01850 -11.00187 -10.93349 -10.72266 -10.56001 -10.25406 -10.17050 -9.95689 -9.71623 -9.56853 -9.19703 -9.11771 -9.06301 -7.28938 -6.09851 -3.44584 1.77322 2.32158 2.47578 2.60619 2.97923 3.23349 3.29275 3.31173 3.39149 3.81624 4.18820 4.27716 4.32473 4.51572 4.54538 4.67847 4.69866 4.82841 4.87486 4.92325 4.97108 5.07166 5.08415 5.12346 5.17141 5.34398 5.35716 5.42521 5.49275 5.58398 5.60348 5.73078 5.82053 5.94982 6.01451 6.07842 6.12631 6.22723 6.26690 6.50431 6.67965 6.73779 6.98926 7.13199 7.35431 7.63498 8.08115 8.70222 8.71597 9.37632 10.15637 11.07815 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.015646 B = 0.002235 C = 0.002101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.206991 B =12527.162586 C =13322.727108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.355 6.355 3 C 0.102 3.898 4 H 0.092 0.908 5 C 0.519 3.481 6 O -0.521 6.521 7 N -0.719 5.719 8 C 0.217 3.783 9 C -0.063 4.063 10 C -0.015 4.015 11 N -0.265 5.265 12 C 0.076 3.924 13 C 0.166 3.834 14 N -0.598 5.598 15 C -0.234 4.234 16 H 0.088 0.912 17 C 0.000 4.000 18 N -0.917 5.917 19 Si 0.918 3.082 20 H -0.286 1.286 21 H -0.288 1.288 22 H -0.278 1.278 23 C 0.120 3.880 24 N -0.089 5.089 25 N -0.266 5.266 26 C -0.185 4.185 27 C -0.165 4.165 28 C -0.164 4.164 29 H 0.046 0.954 30 H 0.090 0.910 31 H 0.045 0.955 32 H 0.402 0.598 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.191 0.809 36 H 0.132 0.868 37 H 0.043 0.957 38 H 0.088 0.912 39 H 0.259 0.741 40 H 0.062 0.938 41 H 0.042 0.958 42 H 0.118 0.882 43 H 0.103 0.897 44 H 0.094 0.906 45 H 0.096 0.904 46 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.847 -11.808 -15.027 20.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.272 6.272 3 C 0.041 3.959 4 H 0.110 0.890 5 C 0.304 3.696 6 O -0.396 6.396 7 N -0.372 5.372 8 C 0.092 3.908 9 C -0.202 4.202 10 C -0.168 4.168 11 N -0.057 5.057 12 C -0.026 4.026 13 C 0.039 3.961 14 N -0.325 5.325 15 C -0.361 4.361 16 H 0.105 0.895 17 C -0.198 4.198 18 N -0.562 5.562 19 Si 0.747 3.253 20 H -0.213 1.213 21 H -0.214 1.214 22 H -0.203 1.203 23 C -0.008 4.008 24 N -0.068 5.068 25 N -0.133 5.133 26 C -0.204 4.204 27 C -0.202 4.202 28 C -0.201 4.201 29 H 0.065 0.935 30 H 0.109 0.891 31 H 0.063 0.937 32 H 0.236 0.764 33 H 0.103 0.897 34 H 0.104 0.896 35 H 0.208 0.792 36 H 0.149 0.851 37 H 0.061 0.939 38 H 0.106 0.894 39 H 0.069 0.931 40 H 0.080 0.920 41 H 0.060 0.940 42 H 0.136 0.864 43 H 0.121 0.879 44 H 0.112 0.888 45 H 0.114 0.886 46 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -5.536 -11.943 -15.390 20.252 hybrid contribution -1.513 1.112 1.413 2.350 sum -7.049 -10.831 -13.977 19.036 Atomic orbital electron populations 1.22956 0.80537 1.03265 1.00325 1.88019 1.19727 1.24891 1.94561 1.21383 0.94127 0.86977 0.93444 0.89007 1.20285 0.84830 0.83660 0.80841 1.90728 1.67239 1.31469 1.50190 1.45930 1.28399 1.10265 1.52650 1.19277 0.86035 0.89581 0.95899 1.21711 1.04412 0.98419 0.95609 1.23511 1.02597 0.87165 1.03568 1.47914 1.28810 1.13049 1.15958 1.25313 1.02778 0.80624 0.93839 1.22694 0.95093 0.88948 0.89328 1.45657 1.70010 1.17151 0.99693 1.19000 1.37025 0.93084 0.86981 0.89454 1.24881 1.00389 0.97938 0.96542 1.69775 1.47612 1.27562 1.11264 0.86021 0.78768 0.80436 0.80069 1.21271 1.21397 1.20270 1.22929 0.93163 0.95705 0.88955 1.78275 1.17660 1.12120 0.98739 1.75028 1.13983 0.99978 1.24290 1.22705 1.07863 0.98188 0.91656 1.22959 0.97663 1.02022 0.97554 1.22934 0.92768 1.01668 1.02711 0.93543 0.89141 0.93657 0.76363 0.89674 0.89571 0.79211 0.85052 0.93922 0.89386 0.93051 0.92010 0.93999 0.86436 0.87904 0.88759 0.88577 0.88139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 10.18 101.05 1.03 1.21 16 2 O -0.35 -3.79 8.56 -55.09 -0.47 -4.26 16 3 C 0.10 0.97 2.98 -27.88 -0.08 0.89 16 4 H 0.09 0.66 7.67 -51.93 -0.40 0.27 16 5 C 0.52 6.30 6.90 -10.98 -0.08 6.23 16 6 O -0.52 -8.43 16.51 -14.31 -0.24 -8.67 16 7 N -0.72 -7.70 5.51 -61.47 -0.34 -8.04 16 8 C 0.22 2.57 6.23 -5.19 -0.03 2.54 16 9 C -0.06 -0.86 6.62 -82.77 -0.55 -1.41 16 10 C -0.01 -0.21 10.72 -17.05 -0.18 -0.39 16 11 N -0.26 -4.20 3.54 -56.30 -0.20 -4.40 16 12 C 0.08 1.28 5.14 -70.14 -0.36 0.92 16 13 C 0.17 3.33 6.82 -2.84 -0.02 3.31 16 14 N -0.60 -13.56 3.70 -177.87 -0.66 -14.21 16 15 C -0.23 -5.94 10.70 -15.06 -0.16 -6.10 16 16 H 0.09 2.14 7.83 -52.49 -0.41 1.73 16 17 C 0.00 0.01 5.50 -17.44 -0.10 -0.09 16 18 N -0.92 -24.77 11.50 55.49 0.64 -24.13 16 19 Si 0.92 20.45 29.56 -169.99 -5.02 15.42 16 20 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 21 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 23 C 0.12 2.16 8.74 -2.97 -0.03 2.13 16 24 N -0.09 -1.51 13.16 60.35 0.79 -0.71 16 25 N -0.27 -4.31 12.41 33.29 0.41 -3.90 16 26 C -0.19 -1.52 5.77 -90.63 -0.52 -2.04 16 27 C -0.17 -1.25 9.56 -26.70 -0.26 -1.50 16 28 C -0.16 -1.49 9.85 -26.70 -0.26 -1.75 16 29 H 0.05 0.25 7.42 -51.93 -0.39 -0.13 16 30 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.04 0.28 8.04 -51.93 -0.42 -0.14 16 32 H 0.40 3.69 8.46 -40.82 -0.35 3.35 16 33 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.19 2.37 6.73 -52.49 -0.35 2.01 16 36 H 0.13 2.13 8.14 -51.93 -0.42 1.71 16 37 H 0.04 0.84 6.31 -51.93 -0.33 0.51 16 38 H 0.09 1.97 7.35 -51.93 -0.38 1.59 16 39 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 40 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.12 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.10 0.81 6.18 -51.93 -0.32 0.49 16 44 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 387.19 15.07 5.83 5.83 Total: -1.00 -31.57 387.19 -7.55 -39.12 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: -6.70 Total: 4.00 kcal Atomic # 6 Polarization: 5.55 SS G_CDS: -1.60 Total: 3.95 kcal Atomic # 7 Polarization: -56.04 SS G_CDS: 0.65 Total: -55.40 kcal Atomic # 8 Polarization: -12.22 SS G_CDS: -0.71 Total: -12.93 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -31.57 -7.55 -39.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107165130.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.897 kcal (2) G-P(sol) polarization free energy of solvation -31.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds