Wall clock time and date at job start Tue Mar 31 2020 18:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 113.99968 * 2 1 4 4 H 1.09006 * 109.47210 * 22.74963 * 3 2 1 5 5 C 1.50696 * 109.46835 * 142.74701 * 3 2 1 6 6 O 1.21285 * 120.00505 * 5.00280 * 5 3 2 7 7 N 1.34782 * 119.99955 * 184.99807 * 5 3 2 8 8 C 1.46495 * 119.99935 * 180.02562 * 7 5 3 9 9 C 1.50706 * 109.47186 * 180.02562 * 8 7 5 10 10 C 1.35345 * 126.75497 * 94.99255 * 9 8 7 11 11 N 1.35318 * 106.17556 * 179.77802 * 10 9 8 12 12 C 1.46497 * 125.86902 * 180.20720 * 11 10 9 13 13 C 1.53947 * 113.74122 * 13.74232 * 12 11 10 14 14 N 1.47811 * 86.03794 * 222.08583 * 13 12 11 15 15 C 1.36938 * 134.45690 * 204.64707 * 14 13 12 16 16 H 1.08002 * 119.99640 * 173.67279 * 15 14 13 17 17 C 1.38805 * 119.99811 * 353.67090 * 15 14 13 18 18 N 1.31613 * 120.00527 * 5.07774 * 17 15 14 19 19 Si 1.86804 * 119.99968 * 185.07700 * 17 15 14 20 20 H 1.48502 * 109.47239 * 94.96818 * 19 17 15 21 21 H 1.48494 * 109.47340 * 214.96937 * 19 17 15 22 22 H 1.48500 * 109.46978 * 334.97022 * 19 17 15 23 23 C 1.47582 * 91.05027 * 24.54847 * 14 13 12 24 24 N 1.28710 * 108.26169 * 0.22868 * 11 10 9 25 25 N 1.28638 * 110.18234 * 359.97438 * 24 11 10 26 26 C 1.53001 * 109.47040 * 262.74661 * 3 2 1 27 27 C 1.52992 * 117.49838 * 11.36057 * 26 3 2 28 28 C 1.52992 * 117.50107 * 302.69940 * 26 3 2 29 29 H 1.09005 * 109.47152 * 62.99424 * 1 2 3 30 30 H 1.08994 * 109.47515 * 182.99119 * 1 2 3 31 31 H 1.08997 * 109.47248 * 302.99586 * 1 2 3 32 32 H 0.96995 * 119.99746 * 0.02562 * 7 5 3 33 33 H 1.08998 * 109.47500 * 60.00170 * 8 7 5 34 34 H 1.09006 * 109.47189 * 299.99491 * 8 7 5 35 35 H 1.07996 * 126.91188 * 0.04610 * 10 9 8 36 36 H 1.08996 * 112.94214 * 145.33233 * 12 11 10 37 37 H 1.09003 * 113.76823 * 336.34897 * 13 12 11 38 38 H 1.08993 * 113.77151 * 107.74450 * 13 12 11 39 39 H 0.97003 * 120.00477 * 180.02562 * 18 17 15 40 40 H 1.08998 * 113.77106 * 221.15400 * 23 14 13 41 41 H 1.09001 * 113.86736 * 89.77098 * 23 14 13 42 42 H 1.09007 * 115.54469 * 157.02546 * 26 3 2 43 43 H 1.09004 * 117.50376 * 359.97438 * 27 26 3 44 44 H 1.09006 * 117.49881 * 145.02247 * 27 26 3 45 45 H 1.08998 * 117.50042 * 214.98429 * 28 26 3 46 46 H 1.09005 * 117.49834 * 359.97438 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.2922 2.0229 0.3974 5 6 3.2477 1.3043 0.8601 6 8 3.6487 0.2672 1.3444 7 7 3.9089 2.4558 1.0910 8 6 5.1121 2.4546 1.9266 9 6 5.6555 3.8567 2.0269 10 6 5.4096 4.7521 3.0116 11 7 6.1063 5.8667 2.6902 12 6 6.1498 7.1064 3.4696 13 6 5.5918 6.9610 4.8971 14 7 4.9373 8.2656 4.6640 15 6 4.4910 9.2734 5.4766 16 1 4.1280 10.1944 5.0449 17 6 4.5051 9.1112 6.8551 18 7 5.0389 8.0313 7.3853 19 14 3.7663 10.4256 7.9578 20 1 2.3631 10.0661 8.2848 21 1 4.5573 10.5225 9.2108 22 1 3.7912 11.7332 7.2544 23 6 4.9603 8.0471 3.2046 24 7 6.7239 5.6507 1.5818 25 7 6.4739 4.4619 1.1588 26 6 2.3840 1.6973 -1.4310 27 6 1.8553 0.8173 -2.5653 28 6 3.3386 0.7734 -2.1899 29 1 -0.3634 0.4667 -0.9157 30 1 -0.3634 -1.0262 0.0536 31 1 -0.3633 0.5596 0.8619 32 1 3.5880 3.2853 0.7039 33 1 5.8642 1.8043 1.4799 34 1 4.8622 2.0902 2.9231 35 1 4.7865 4.6049 3.8814 36 1 7.1195 7.6020 3.4259 37 1 4.8924 6.1331 5.0131 38 1 6.3574 6.9845 5.6725 39 1 5.0484 7.9178 8.3486 40 1 5.2227 8.9363 2.6314 41 1 4.0755 7.5393 2.8207 42 1 2.4634 2.7679 -1.6197 43 1 1.2415 -0.0411 -2.2923 44 1 1.5873 1.3089 -3.5006 45 1 4.0459 1.2362 -2.8782 46 1 3.7007 -0.1134 -1.6696 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107165130.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:53 Heat of formation + Delta-G solvation = 88.850774 kcal Electronic energy + Delta-G solvation = -28356.591900 eV Core-core repulsion = 24286.283776 eV Total energy + Delta-G solvation = -4070.308124 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.34927 -41.22287 -39.94458 -39.08405 -36.86724 -36.24351 -34.95612 -33.67055 -32.57734 -30.26004 -29.68764 -27.80951 -26.91657 -26.54266 -25.97173 -23.43156 -23.34142 -22.70379 -22.27727 -21.14015 -21.06938 -19.07804 -18.70687 -18.05094 -18.01832 -17.62522 -17.19590 -16.95410 -16.37740 -16.17909 -15.91426 -15.66919 -15.60769 -15.41087 -14.83400 -14.53670 -14.38581 -14.26015 -13.75089 -13.67451 -13.56418 -13.39808 -12.97167 -12.81217 -12.77894 -12.62712 -12.42193 -12.34009 -12.26076 -12.09393 -11.78583 -11.77251 -11.72312 -11.34277 -11.01875 -10.90401 -10.83610 -10.59473 -10.21786 -10.14669 -9.09518 -8.02288 -5.36618 0.56914 1.20305 1.29599 1.48041 1.50331 1.54412 1.57689 2.08493 2.42954 2.74351 3.06214 3.08505 3.12867 3.32625 3.33249 3.61532 3.72374 3.78239 3.89352 3.92837 4.00783 4.16546 4.21407 4.25121 4.35086 4.48593 4.54812 4.57927 4.59189 4.60786 4.70313 4.80518 4.88248 4.92414 4.99327 5.02087 5.04800 5.08865 5.17831 5.29874 5.30264 5.37726 5.66772 5.76948 6.04565 6.49742 6.80256 7.17166 7.46549 7.48753 8.34310 9.15078 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.015646 B = 0.002235 C = 0.002101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.206991 B =12527.162586 C =13322.727108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.384 6.384 3 C 0.103 3.897 4 H 0.119 0.881 5 C 0.518 3.482 6 O -0.568 6.568 7 N -0.708 5.708 8 C 0.220 3.780 9 C -0.048 4.048 10 C -0.012 4.012 11 N -0.268 5.268 12 C 0.104 3.896 13 C 0.168 3.832 14 N -0.628 5.628 15 C -0.238 4.238 16 H 0.091 0.909 17 C -0.055 4.055 18 N -0.947 5.947 19 Si 0.977 3.023 20 H -0.287 1.287 21 H -0.295 1.295 22 H -0.266 1.266 23 C 0.126 3.874 24 N -0.107 5.107 25 N -0.279 5.279 26 C -0.181 4.181 27 C -0.151 4.151 28 C -0.182 4.182 29 H 0.063 0.937 30 H 0.096 0.904 31 H 0.052 0.948 32 H 0.412 0.588 33 H 0.078 0.922 34 H 0.095 0.905 35 H 0.207 0.793 36 H 0.138 0.862 37 H 0.048 0.952 38 H 0.060 0.940 39 H 0.253 0.747 40 H 0.076 0.924 41 H 0.054 0.946 42 H 0.138 0.862 43 H 0.099 0.901 44 H 0.114 0.886 45 H 0.103 0.897 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.300 -11.067 -16.393 21.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.302 6.302 3 C 0.042 3.958 4 H 0.137 0.863 5 C 0.304 3.696 6 O -0.447 6.447 7 N -0.361 5.361 8 C 0.095 3.905 9 C -0.187 4.187 10 C -0.166 4.166 11 N -0.061 5.061 12 C 0.002 3.998 13 C 0.041 3.959 14 N -0.355 5.355 15 C -0.366 4.366 16 H 0.109 0.891 17 C -0.249 4.249 18 N -0.594 5.594 19 Si 0.805 3.195 20 H -0.214 1.214 21 H -0.222 1.222 22 H -0.191 1.191 23 C 0.000 4.000 24 N -0.086 5.086 25 N -0.146 5.146 26 C -0.200 4.200 27 C -0.187 4.187 28 C -0.219 4.219 29 H 0.082 0.918 30 H 0.115 0.885 31 H 0.071 0.929 32 H 0.248 0.752 33 H 0.096 0.904 34 H 0.113 0.887 35 H 0.224 0.776 36 H 0.156 0.844 37 H 0.066 0.934 38 H 0.078 0.922 39 H 0.062 0.938 40 H 0.094 0.906 41 H 0.072 0.928 42 H 0.155 0.845 43 H 0.117 0.883 44 H 0.132 0.868 45 H 0.121 0.879 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -6.997 -11.175 -16.816 21.369 hybrid contribution -1.058 0.792 1.754 2.196 sum -8.056 -10.383 -15.062 19.990 Atomic orbital electron populations 1.23143 0.78770 1.04158 1.01507 1.87990 1.21749 1.25748 1.94717 1.21462 0.93274 0.87369 0.93703 0.86344 1.20860 0.85366 0.83005 0.80359 1.90705 1.68668 1.33096 1.52188 1.45815 1.27709 1.10531 1.52068 1.19239 0.86356 0.88279 0.96616 1.21855 1.03396 0.98719 0.94776 1.23825 1.02204 0.86573 1.03969 1.47715 1.29310 1.13094 1.15958 1.24719 1.02631 0.80701 0.91760 1.22567 0.94488 0.88354 0.90466 1.45892 1.70455 1.17442 1.01733 1.19330 1.35699 0.93968 0.87591 0.89085 1.25611 1.01479 0.99926 0.97905 1.69922 1.49345 1.29290 1.10874 0.85083 0.77523 0.78801 0.78059 1.21410 1.22218 1.19065 1.23020 0.93842 0.96579 0.86603 1.78285 1.18460 1.12632 0.99200 1.75020 1.14599 0.99996 1.24968 1.22795 1.07170 0.99057 0.90969 1.23012 0.96042 1.01685 0.98004 1.22874 0.94050 1.01360 1.03620 0.91837 0.88509 0.92944 0.75159 0.90418 0.88660 0.77600 0.84393 0.93426 0.92182 0.93773 0.90581 0.92795 0.84473 0.88278 0.86798 0.87891 0.90864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 10.18 113.37 1.15 1.40 16 2 O -0.38 -7.84 8.56 -129.99 -1.11 -8.95 16 3 C 0.10 1.78 2.98 29.85 0.09 1.87 16 4 H 0.12 1.37 7.67 -2.38 -0.02 1.36 16 5 C 0.52 12.13 6.90 87.65 0.60 12.74 16 6 O -0.57 -18.55 16.51 15.94 0.26 -18.28 16 7 N -0.71 -14.09 5.51 -466.78 -2.57 -16.66 16 8 C 0.22 4.96 6.23 85.64 0.53 5.50 16 9 C -0.05 -1.24 6.62 41.60 0.28 -0.97 16 10 C -0.01 -0.33 10.72 83.49 0.89 0.57 16 11 N -0.27 -8.04 3.54 -332.03 -1.18 -9.21 16 12 C 0.10 3.35 5.14 46.75 0.24 3.59 16 13 C 0.17 6.66 6.82 86.44 0.59 7.25 16 14 N -0.63 -27.89 3.70 -716.67 -2.65 -30.54 16 15 C -0.24 -11.93 10.70 84.03 0.90 -11.03 16 16 H 0.09 4.35 7.83 -2.91 -0.02 4.33 16 17 C -0.05 -2.84 5.50 84.86 0.47 -2.37 16 18 N -0.95 -51.76 11.50 21.65 0.25 -51.51 16 19 Si 0.98 41.93 29.56 68.60 2.03 43.96 16 20 H -0.29 -12.25 7.11 99.48 0.71 -11.55 16 21 H -0.30 -12.92 7.11 99.48 0.71 -12.21 16 22 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 23 C 0.13 4.27 8.74 86.49 0.76 5.03 16 24 N -0.11 -3.46 13.16 37.02 0.49 -2.98 16 25 N -0.28 -8.62 12.41 -48.60 -0.60 -9.22 16 26 C -0.18 -2.58 5.77 -10.80 -0.06 -2.65 16 27 C -0.15 -1.97 9.56 30.61 0.29 -1.68 16 28 C -0.18 -3.17 9.85 30.61 0.30 -2.86 16 29 H 0.06 0.54 7.42 -2.38 -0.02 0.52 16 30 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.05 0.55 8.04 -2.39 -0.02 0.53 16 32 H 0.41 6.61 8.46 -92.71 -0.78 5.83 16 33 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.10 2.02 8.14 -2.38 -0.02 2.00 16 35 H 0.21 4.70 6.73 -2.91 -0.02 4.68 16 36 H 0.14 4.29 8.14 -2.39 -0.02 4.27 16 37 H 0.05 1.84 6.31 -2.39 -0.02 1.82 16 38 H 0.06 2.73 7.35 -2.39 -0.02 2.71 16 39 H 0.25 13.56 8.31 -92.71 -0.77 12.79 16 40 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 41 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 42 H 0.14 1.42 8.14 -2.38 -0.02 1.40 16 43 H 0.10 1.39 6.18 -2.38 -0.01 1.38 16 44 H 0.11 1.06 8.14 -2.38 -0.02 1.04 16 45 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 46 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 Total: -1.00 -68.16 387.19 2.17 -65.99 By element: Atomic # 1 Polarization: 20.82 SS G_CDS: 0.23 Total: 21.05 kcal Atomic # 6 Polarization: 9.34 SS G_CDS: 7.03 Total: 16.37 kcal Atomic # 7 Polarization: -113.86 SS G_CDS: -6.27 Total: -120.13 kcal Atomic # 8 Polarization: -26.39 SS G_CDS: -0.85 Total: -27.24 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.96 kcal Total: -68.16 2.17 -65.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107165130.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.843 kcal (2) G-P(sol) polarization free energy of solvation -68.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds