Wall clock time and date at job start Tue Mar 31 2020 18:31:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42890 * 114.00137 * 2 1 4 4 H 1.09005 * 109.47455 * 29.99535 * 3 2 1 5 5 C 1.50703 * 109.47324 * 269.99943 * 3 2 1 6 6 O 1.21283 * 119.99488 * 354.99756 * 5 3 2 7 7 N 1.34777 * 120.00290 * 175.00196 * 5 3 2 8 8 C 1.46498 * 119.99828 * 180.27728 * 7 5 3 9 9 C 1.50700 * 109.46769 * 179.72341 * 8 7 5 10 10 C 1.35352 * 126.75361 * 94.71485 * 9 8 7 11 11 N 1.35317 * 106.17693 * 179.84844 * 10 9 8 12 12 C 1.46491 * 125.87029 * 180.18381 * 11 10 9 13 13 C 1.53947 * 113.74330 * 14.03356 * 12 11 10 14 14 N 1.47807 * 86.03671 * 222.08595 * 13 12 11 15 15 C 1.36935 * 134.45249 * 204.64331 * 14 13 12 16 16 H 1.08003 * 120.00142 * 179.86840 * 15 14 13 17 17 C 1.38809 * 120.00476 * 359.86834 * 15 14 13 18 18 N 1.31625 * 119.99820 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00334 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.46880 * 60.00010 * 19 17 15 21 21 H 1.48496 * 109.47045 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47040 * 299.99997 * 19 17 15 23 23 C 1.47576 * 91.05211 * 24.54811 * 14 13 12 24 24 N 1.28721 * 108.25949 * 0.41126 * 11 10 9 25 25 N 1.28636 * 110.17920 * 359.73997 * 24 11 10 26 26 C 1.53006 * 109.47440 * 149.99839 * 3 2 1 27 27 C 1.52999 * 117.49400 * 8.74415 * 26 3 2 28 28 C 1.52995 * 117.49694 * 300.09023 * 26 3 2 29 29 H 1.08996 * 109.47412 * 300.00104 * 1 2 3 30 30 H 1.09004 * 109.46969 * 60.00189 * 1 2 3 31 31 H 1.08995 * 109.47281 * 180.02562 * 1 2 3 32 32 H 0.97001 * 119.99727 * 359.97438 * 7 5 3 33 33 H 1.09004 * 109.46963 * 299.72135 * 8 7 5 34 34 H 1.08994 * 109.47567 * 59.72287 * 8 7 5 35 35 H 1.08002 * 126.90994 * 359.97438 * 10 9 8 36 36 H 1.09000 * 112.94374 * 145.62885 * 12 11 10 37 37 H 1.09002 * 113.76976 * 336.35198 * 13 12 11 38 38 H 1.08999 * 113.76656 * 107.74318 * 13 12 11 39 39 H 0.96996 * 120.00067 * 180.02562 * 18 17 15 40 40 H 1.09000 * 113.76645 * 221.14620 * 23 14 13 41 41 H 1.09000 * 113.87057 * 89.76846 * 23 14 13 42 42 H 1.09003 * 115.55109 * 154.41535 * 26 3 2 43 43 H 1.08995 * 117.50186 * 0.02562 * 27 26 3 44 44 H 1.09004 * 117.49671 * 145.01652 * 27 26 3 45 45 H 1.09002 * 117.50084 * 214.98163 * 28 26 3 46 46 H 1.09002 * 117.49961 * 359.97438 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9994 0.5138 5 6 2.2146 1.7643 -1.4208 6 8 1.9792 1.0105 -2.3413 7 7 2.6590 3.0123 -1.6686 8 6 2.8518 3.4604 -3.0500 9 6 3.3445 4.8846 -3.0519 10 6 4.6324 5.2960 -3.1140 11 7 4.5976 6.6486 -3.0923 12 6 5.7604 7.5381 -3.1446 13 6 7.0612 6.8335 -3.5702 14 7 7.7160 7.6221 -2.5053 15 6 8.9951 8.0577 -2.2833 16 1 9.2224 8.6385 -1.4016 17 6 9.9996 7.7529 -3.1915 18 7 9.7226 7.0456 -4.2664 19 14 11.7446 8.3466 -2.8883 20 1 12.2408 7.7897 -1.6042 21 1 12.6219 7.8915 -3.9966 22 1 11.7584 9.8301 -2.8226 23 6 6.4380 7.7534 -1.7792 24 7 3.3675 7.0191 -3.0129 25 7 2.5951 5.9908 -2.9869 26 6 3.3590 1.2632 0.7213 27 6 3.9152 -0.1111 1.0992 28 6 3.3638 0.8167 2.1846 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 2.8469 3.6153 -0.9324 33 1 3.5863 2.8212 -3.5401 34 1 1.9047 3.4029 -3.5863 35 1 5.5111 4.6706 -3.1717 36 1 5.5640 8.4626 -3.6876 37 1 7.0603 5.7594 -3.3841 38 1 7.3918 7.0918 -4.5763 39 1 10.4246 6.8322 -4.9008 40 1 6.2720 8.7448 -1.3577 41 1 6.2520 6.9511 -1.0651 42 1 4.0736 2.0320 0.4273 43 1 3.3206 -0.9851 0.8336 44 1 4.9959 -0.2463 1.0541 45 1 4.0818 1.2914 2.8534 46 1 2.4061 0.5533 2.6336 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107165131.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:56 Heat of formation + Delta-G solvation = 108.189235 kcal Electronic energy + Delta-G solvation = -28389.562153 eV Core-core repulsion = 24320.092607 eV Total energy + Delta-G solvation = -4069.469546 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.11448 -40.35489 -38.43629 -38.10151 -36.42686 -35.18404 -33.44924 -32.05005 -31.43724 -29.35924 -27.99428 -27.01649 -25.84521 -25.25326 -24.41212 -22.60738 -21.99523 -21.78193 -21.14328 -20.39978 -19.66553 -18.15040 -17.34582 -17.07958 -16.76950 -16.46115 -16.07153 -15.49225 -15.23471 -15.14956 -14.99389 -14.74164 -14.48654 -14.11886 -13.74552 -13.46686 -13.32387 -13.05259 -12.89148 -12.26882 -12.14468 -11.89684 -11.86712 -11.77477 -11.62148 -11.41970 -11.21039 -11.03498 -10.97436 -10.94348 -10.70297 -10.57121 -10.45825 -10.29243 -9.92377 -9.65013 -9.53032 -9.22262 -9.11615 -9.04627 -7.29584 -6.07675 -3.43370 1.76908 2.34078 2.42299 2.60002 3.06252 3.24734 3.29402 3.30596 3.48693 3.58198 4.19135 4.29774 4.31186 4.51059 4.57599 4.67599 4.70438 4.80823 4.87479 4.90605 5.00325 5.10487 5.10902 5.17088 5.19251 5.36899 5.41256 5.42729 5.48358 5.57000 5.62995 5.71371 5.82680 6.00976 6.01288 6.06791 6.11722 6.20701 6.25850 6.49715 6.66793 6.76013 6.98794 7.12689 7.32591 7.64383 8.04371 8.69252 8.72250 9.38660 10.15748 11.09457 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013826 B = 0.002391 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2024.751491 B =11709.549852 C =12929.301480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.355 6.355 3 C 0.106 3.894 4 H 0.090 0.910 5 C 0.496 3.504 6 O -0.525 6.525 7 N -0.721 5.721 8 C 0.215 3.785 9 C -0.063 4.063 10 C -0.014 4.014 11 N -0.264 5.264 12 C 0.077 3.923 13 C 0.164 3.836 14 N -0.598 5.598 15 C -0.234 4.234 16 H 0.087 0.913 17 C 0.000 4.000 18 N -0.919 5.919 19 Si 0.920 3.080 20 H -0.282 1.282 21 H -0.287 1.287 22 H -0.281 1.281 23 C 0.120 3.880 24 N -0.088 5.088 25 N -0.268 5.268 26 C -0.164 4.164 27 C -0.157 4.157 28 C -0.169 4.169 29 H 0.042 0.958 30 H 0.046 0.954 31 H 0.090 0.910 32 H 0.403 0.597 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.191 0.809 36 H 0.132 0.868 37 H 0.041 0.959 38 H 0.092 0.908 39 H 0.260 0.740 40 H 0.062 0.938 41 H 0.043 0.957 42 H 0.121 0.879 43 H 0.108 0.892 44 H 0.095 0.905 45 H 0.098 0.902 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.421 -10.484 9.235 20.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.271 6.271 3 C 0.044 3.956 4 H 0.108 0.892 5 C 0.281 3.719 6 O -0.401 6.401 7 N -0.375 5.375 8 C 0.090 3.910 9 C -0.202 4.202 10 C -0.168 4.168 11 N -0.057 5.057 12 C -0.025 4.025 13 C 0.037 3.963 14 N -0.325 5.325 15 C -0.361 4.361 16 H 0.105 0.895 17 C -0.198 4.198 18 N -0.565 5.565 19 Si 0.749 3.251 20 H -0.209 1.209 21 H -0.213 1.213 22 H -0.207 1.207 23 C -0.007 4.007 24 N -0.067 5.067 25 N -0.134 5.134 26 C -0.183 4.183 27 C -0.194 4.194 28 C -0.206 4.206 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.108 0.892 32 H 0.237 0.763 33 H 0.104 0.896 34 H 0.102 0.898 35 H 0.208 0.792 36 H 0.150 0.850 37 H 0.059 0.941 38 H 0.110 0.890 39 H 0.070 0.930 40 H 0.080 0.920 41 H 0.060 0.940 42 H 0.139 0.861 43 H 0.126 0.874 44 H 0.113 0.887 45 H 0.116 0.884 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -15.072 -9.928 8.534 19.964 hybrid contribution 1.764 0.077 0.320 1.794 sum -13.308 -9.851 8.854 18.776 Atomic orbital electron populations 1.22879 0.80548 1.03276 1.00131 1.87978 1.20032 1.24788 1.94350 1.21407 0.95477 0.86812 0.91891 0.89220 1.21200 0.77144 0.81518 0.92026 1.90720 1.49803 1.53614 1.45923 1.46092 1.68016 1.14369 1.09045 1.19280 1.01844 0.86713 0.83130 1.21714 0.90472 0.96052 1.11970 1.23511 1.00537 0.85479 1.07268 1.47919 1.07772 1.06347 1.43659 1.25300 0.80045 0.94752 1.02415 1.22746 0.82347 0.94254 0.96949 1.45659 1.03936 1.60639 1.22255 1.18948 0.81743 1.28774 1.06586 0.89541 1.24857 0.98573 0.99581 0.96800 1.69749 1.32917 1.41626 1.12187 0.86086 0.83154 0.78496 0.77361 1.20860 1.21296 1.20725 1.22925 0.85694 1.00094 0.91994 1.78276 0.87398 1.21518 1.19556 1.75018 1.26437 0.95373 1.16603 1.22282 0.96476 1.01383 0.98145 1.22902 1.00912 0.93879 1.01726 1.22975 1.03245 1.03838 0.90514 0.93941 0.93502 0.89167 0.76305 0.89561 0.89793 0.79212 0.85025 0.94098 0.89019 0.93008 0.91974 0.93993 0.86120 0.87378 0.88661 0.88377 0.88617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.81 101.05 1.09 1.32 16 2 O -0.35 -3.75 8.24 -55.09 -0.45 -4.21 16 3 C 0.11 1.00 2.87 -27.88 -0.08 0.92 16 4 H 0.09 0.66 7.79 -51.93 -0.40 0.26 16 5 C 0.50 5.91 7.12 -10.98 -0.08 5.83 16 6 O -0.53 -8.28 16.51 -14.31 -0.24 -8.52 16 7 N -0.72 -7.65 5.44 -61.47 -0.33 -7.98 16 8 C 0.22 2.54 6.23 -5.19 -0.03 2.51 16 9 C -0.06 -0.87 6.61 -82.78 -0.55 -1.41 16 10 C -0.01 -0.20 10.72 -17.04 -0.18 -0.38 16 11 N -0.26 -4.20 3.54 -56.31 -0.20 -4.40 16 12 C 0.08 1.30 5.14 -70.15 -0.36 0.94 16 13 C 0.16 3.30 6.90 -2.84 -0.02 3.28 16 14 N -0.60 -13.58 3.70 -177.90 -0.66 -14.24 16 15 C -0.23 -5.94 10.70 -15.06 -0.16 -6.10 16 16 H 0.09 2.11 7.83 -52.48 -0.41 1.70 16 17 C 0.00 -0.01 5.50 -17.43 -0.10 -0.11 16 18 N -0.92 -24.88 11.39 55.49 0.63 -24.25 16 19 Si 0.92 20.50 29.55 -169.99 -5.02 15.48 16 20 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 21 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 23 C 0.12 2.17 8.74 -2.97 -0.03 2.14 16 24 N -0.09 -1.50 13.17 60.35 0.79 -0.71 16 25 N -0.27 -4.33 12.41 33.29 0.41 -3.92 16 26 C -0.16 -1.41 5.67 -90.62 -0.51 -1.92 16 27 C -0.16 -1.37 9.88 -26.70 -0.26 -1.63 16 28 C -0.17 -1.23 10.19 -26.70 -0.27 -1.51 16 29 H 0.04 0.25 8.08 -51.93 -0.42 -0.17 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.40 3.67 8.46 -40.82 -0.35 3.33 16 33 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.19 2.37 6.74 -52.49 -0.35 2.02 16 36 H 0.13 2.16 8.14 -51.93 -0.42 1.73 16 37 H 0.04 0.80 6.31 -51.93 -0.33 0.48 16 38 H 0.09 2.07 7.16 -51.93 -0.37 1.69 16 39 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 40 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 41 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.12 0.98 8.03 -51.93 -0.42 0.56 16 43 H 0.11 1.04 7.06 -51.93 -0.37 0.68 16 44 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 45 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 389.56 15.07 5.87 5.87 Total: -1.00 -31.29 389.56 -7.52 -38.81 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -6.78 Total: 4.20 kcal Atomic # 6 Polarization: 5.41 SS G_CDS: -1.54 Total: 3.87 kcal Atomic # 7 Polarization: -56.14 SS G_CDS: 0.65 Total: -55.50 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: -0.69 Total: -12.72 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -31.29 -7.52 -38.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107165131.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.996 kcal (2) G-P(sol) polarization free energy of solvation -31.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.807 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds