Wall clock time and date at job start Tue Mar 31 2020 18:31:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42890 * 114.00137 * 2 1 4 4 H 1.09005 * 109.47455 * 29.99535 * 3 2 1 5 5 C 1.50703 * 109.47324 * 269.99943 * 3 2 1 6 6 O 1.21283 * 119.99488 * 354.99756 * 5 3 2 7 7 N 1.34777 * 120.00290 * 175.00196 * 5 3 2 8 8 C 1.46498 * 119.99828 * 180.27728 * 7 5 3 9 9 C 1.50700 * 109.46769 * 179.72341 * 8 7 5 10 10 C 1.35352 * 126.75361 * 94.71485 * 9 8 7 11 11 N 1.35317 * 106.17693 * 179.84844 * 10 9 8 12 12 C 1.46491 * 125.87029 * 180.18381 * 11 10 9 13 13 C 1.53947 * 113.74330 * 14.03356 * 12 11 10 14 14 N 1.47807 * 86.03671 * 222.08595 * 13 12 11 15 15 C 1.36935 * 134.45249 * 204.64331 * 14 13 12 16 16 H 1.08003 * 120.00142 * 179.86840 * 15 14 13 17 17 C 1.38809 * 120.00476 * 359.86834 * 15 14 13 18 18 N 1.31625 * 119.99820 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00334 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.46880 * 60.00010 * 19 17 15 21 21 H 1.48496 * 109.47045 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47040 * 299.99997 * 19 17 15 23 23 C 1.47576 * 91.05211 * 24.54811 * 14 13 12 24 24 N 1.28721 * 108.25949 * 0.41126 * 11 10 9 25 25 N 1.28636 * 110.17920 * 359.73997 * 24 11 10 26 26 C 1.53006 * 109.47440 * 149.99839 * 3 2 1 27 27 C 1.52999 * 117.49400 * 8.74415 * 26 3 2 28 28 C 1.52995 * 117.49694 * 300.09023 * 26 3 2 29 29 H 1.08996 * 109.47412 * 300.00104 * 1 2 3 30 30 H 1.09004 * 109.46969 * 60.00189 * 1 2 3 31 31 H 1.08995 * 109.47281 * 180.02562 * 1 2 3 32 32 H 0.97001 * 119.99727 * 359.97438 * 7 5 3 33 33 H 1.09004 * 109.46963 * 299.72135 * 8 7 5 34 34 H 1.08994 * 109.47567 * 59.72287 * 8 7 5 35 35 H 1.08002 * 126.90994 * 359.97438 * 10 9 8 36 36 H 1.09000 * 112.94374 * 145.62885 * 12 11 10 37 37 H 1.09002 * 113.76976 * 336.35198 * 13 12 11 38 38 H 1.08999 * 113.76656 * 107.74318 * 13 12 11 39 39 H 0.96996 * 120.00067 * 180.02562 * 18 17 15 40 40 H 1.09000 * 113.76645 * 221.14620 * 23 14 13 41 41 H 1.09000 * 113.87057 * 89.76846 * 23 14 13 42 42 H 1.09003 * 115.55109 * 154.41535 * 26 3 2 43 43 H 1.08995 * 117.50186 * 0.02562 * 27 26 3 44 44 H 1.09004 * 117.49671 * 145.01652 * 27 26 3 45 45 H 1.09002 * 117.50084 * 214.98163 * 28 26 3 46 46 H 1.09002 * 117.49961 * 359.97438 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9994 0.5138 5 6 2.2146 1.7643 -1.4208 6 8 1.9792 1.0105 -2.3413 7 7 2.6590 3.0123 -1.6686 8 6 2.8518 3.4604 -3.0500 9 6 3.3445 4.8846 -3.0519 10 6 4.6324 5.2960 -3.1140 11 7 4.5976 6.6486 -3.0923 12 6 5.7604 7.5381 -3.1446 13 6 7.0612 6.8335 -3.5702 14 7 7.7160 7.6221 -2.5053 15 6 8.9951 8.0577 -2.2833 16 1 9.2224 8.6385 -1.4016 17 6 9.9996 7.7529 -3.1915 18 7 9.7226 7.0456 -4.2664 19 14 11.7446 8.3466 -2.8883 20 1 12.2408 7.7897 -1.6042 21 1 12.6219 7.8915 -3.9966 22 1 11.7584 9.8301 -2.8226 23 6 6.4380 7.7534 -1.7792 24 7 3.3675 7.0191 -3.0129 25 7 2.5951 5.9908 -2.9869 26 6 3.3590 1.2632 0.7213 27 6 3.9152 -0.1111 1.0992 28 6 3.3638 0.8167 2.1846 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 2.8469 3.6153 -0.9324 33 1 3.5863 2.8212 -3.5401 34 1 1.9047 3.4029 -3.5863 35 1 5.5111 4.6706 -3.1717 36 1 5.5640 8.4626 -3.6876 37 1 7.0603 5.7594 -3.3841 38 1 7.3918 7.0918 -4.5763 39 1 10.4246 6.8322 -4.9008 40 1 6.2720 8.7448 -1.3577 41 1 6.2520 6.9511 -1.0651 42 1 4.0736 2.0320 0.4273 43 1 3.3206 -0.9851 0.8336 44 1 4.9959 -0.2463 1.0541 45 1 4.0818 1.2914 2.8534 46 1 2.4061 0.5533 2.6336 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107165131.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:56 Heat of formation + Delta-G solvation = 87.832113 kcal Electronic energy + Delta-G solvation = -28390.444904 eV Core-core repulsion = 24320.092607 eV Total energy + Delta-G solvation = -4070.352297 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.35973 -41.22319 -39.94882 -38.93237 -37.10741 -36.22852 -34.95926 -33.67098 -32.59157 -30.19565 -29.68747 -27.87386 -26.93850 -26.53358 -25.97175 -23.42801 -23.21931 -22.64314 -22.28895 -21.21002 -21.13484 -19.17876 -18.84785 -18.12946 -17.91078 -17.37779 -17.10540 -16.96543 -16.39236 -16.14914 -16.07118 -15.76669 -15.58256 -15.34959 -14.83855 -14.55812 -14.38788 -14.25518 -13.94758 -13.66641 -13.56292 -13.39483 -12.97378 -12.75094 -12.64092 -12.52610 -12.43795 -12.41570 -12.24667 -12.14904 -11.82387 -11.80803 -11.70911 -11.34658 -11.10350 -11.02819 -10.88687 -10.53193 -10.18279 -10.12061 -9.10616 -8.00576 -5.35886 0.55997 1.20907 1.28760 1.49201 1.49928 1.50897 1.56633 2.18537 2.43298 2.74073 2.94939 3.07652 3.11468 3.31267 3.33184 3.58158 3.73003 3.79458 3.91118 3.94600 4.00073 4.15284 4.16457 4.25569 4.39799 4.46870 4.52081 4.55252 4.57224 4.59834 4.69146 4.83842 4.86847 4.91216 5.00457 5.01788 5.04673 5.10098 5.23383 5.28263 5.36870 5.36912 5.65857 5.77634 5.98432 6.46944 6.80544 7.14367 7.45205 7.49336 8.34047 9.15969 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013826 B = 0.002391 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2024.751491 B =11709.549852 C =12929.301480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.374 6.374 3 C 0.109 3.891 4 H 0.115 0.885 5 C 0.496 3.504 6 O -0.569 6.569 7 N -0.710 5.710 8 C 0.219 3.781 9 C -0.049 4.049 10 C -0.012 4.012 11 N -0.268 5.268 12 C 0.104 3.896 13 C 0.165 3.835 14 N -0.628 5.628 15 C -0.238 4.238 16 H 0.091 0.909 17 C -0.056 4.056 18 N -0.949 5.949 19 Si 0.979 3.021 20 H -0.277 1.277 21 H -0.296 1.296 22 H -0.275 1.275 23 C 0.126 3.874 24 N -0.107 5.107 25 N -0.280 5.280 26 C -0.171 4.171 27 C -0.172 4.172 28 C -0.150 4.150 29 H 0.066 0.934 30 H 0.033 0.967 31 H 0.100 0.900 32 H 0.412 0.588 33 H 0.094 0.906 34 H 0.079 0.921 35 H 0.207 0.793 36 H 0.138 0.862 37 H 0.047 0.953 38 H 0.063 0.937 39 H 0.253 0.747 40 H 0.076 0.924 41 H 0.055 0.945 42 H 0.126 0.874 43 H 0.094 0.906 44 H 0.098 0.902 45 H 0.111 0.889 46 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.940 -10.321 11.063 21.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.292 6.292 3 C 0.047 3.953 4 H 0.133 0.867 5 C 0.283 3.717 6 O -0.447 6.447 7 N -0.364 5.364 8 C 0.094 3.906 9 C -0.188 4.188 10 C -0.166 4.166 11 N -0.060 5.060 12 C 0.002 3.998 13 C 0.039 3.961 14 N -0.355 5.355 15 C -0.366 4.366 16 H 0.109 0.891 17 C -0.250 4.250 18 N -0.596 5.596 19 Si 0.807 3.193 20 H -0.203 1.203 21 H -0.222 1.222 22 H -0.201 1.201 23 C 0.000 4.000 24 N -0.086 5.086 25 N -0.147 5.147 26 C -0.189 4.189 27 C -0.209 4.209 28 C -0.187 4.187 29 H 0.084 0.916 30 H 0.052 0.948 31 H 0.118 0.882 32 H 0.248 0.752 33 H 0.112 0.888 34 H 0.097 0.903 35 H 0.224 0.776 36 H 0.155 0.845 37 H 0.065 0.935 38 H 0.081 0.919 39 H 0.062 0.938 40 H 0.094 0.906 41 H 0.073 0.927 42 H 0.144 0.856 43 H 0.113 0.887 44 H 0.116 0.884 45 H 0.129 0.871 46 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -15.630 -9.736 10.407 21.152 hybrid contribution 1.809 -0.026 -0.227 1.823 sum -13.821 -9.762 10.180 19.748 Atomic orbital electron populations 1.23028 0.79430 1.04223 1.00583 1.87963 1.21395 1.25521 1.94281 1.21501 0.96520 0.86977 0.90280 0.86744 1.21728 0.76074 0.81163 0.92769 1.90700 1.51818 1.54791 1.47422 1.45982 1.67342 1.14264 1.08855 1.19243 1.01778 0.85693 0.83912 1.21871 0.90038 0.96193 1.10688 1.23826 1.01315 0.84918 1.06518 1.47714 1.07315 1.06767 1.44252 1.24699 0.79375 0.94293 1.01416 1.22615 0.83813 0.94561 0.95132 1.45898 1.04444 1.61185 1.23977 1.19295 0.83124 1.27912 1.06284 0.89105 1.25600 1.01937 1.00489 0.96977 1.69908 1.33334 1.43355 1.13027 0.85148 0.79110 0.78155 0.76894 1.20272 1.22172 1.20108 1.23018 0.83381 1.01184 0.92426 1.78286 0.87566 1.21997 1.20708 1.75008 1.26768 0.95976 1.16923 1.22330 0.96100 1.01301 0.99212 1.22903 1.00977 0.93701 1.03311 1.23038 1.03640 1.02215 0.89827 0.91584 0.94824 0.88159 0.75161 0.88833 0.90273 0.77640 0.84453 0.93509 0.91876 0.93800 0.90581 0.92742 0.85625 0.88720 0.88376 0.87100 0.87938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 10.81 113.37 1.23 1.57 16 2 O -0.37 -7.53 8.24 -129.99 -1.07 -8.61 16 3 C 0.11 1.87 2.87 29.85 0.09 1.96 16 4 H 0.12 1.38 7.79 -2.38 -0.02 1.36 16 5 C 0.50 11.30 7.12 87.66 0.62 11.92 16 6 O -0.57 -17.85 16.51 15.95 0.26 -17.58 16 7 N -0.71 -13.92 5.44 -466.79 -2.54 -16.46 16 8 C 0.22 4.87 6.23 85.63 0.53 5.40 16 9 C -0.05 -1.25 6.61 41.60 0.28 -0.98 16 10 C -0.01 -0.33 10.72 83.49 0.89 0.57 16 11 N -0.27 -8.05 3.54 -332.06 -1.18 -9.23 16 12 C 0.10 3.38 5.14 46.75 0.24 3.62 16 13 C 0.17 6.59 6.90 86.44 0.60 7.19 16 14 N -0.63 -27.99 3.70 -716.75 -2.65 -30.64 16 15 C -0.24 -11.98 10.70 84.03 0.90 -11.08 16 16 H 0.09 4.34 7.83 -2.91 -0.02 4.32 16 17 C -0.06 -2.90 5.50 84.86 0.47 -2.43 16 18 N -0.95 -52.00 11.39 21.65 0.25 -51.75 16 19 Si 0.98 42.06 29.55 68.60 2.03 44.08 16 20 H -0.28 -11.50 7.11 99.48 0.71 -10.80 16 21 H -0.30 -12.95 7.11 99.48 0.71 -12.24 16 22 H -0.28 -11.42 7.11 99.48 0.71 -10.72 16 23 C 0.13 4.30 8.74 86.49 0.76 5.06 16 24 N -0.11 -3.46 13.17 37.02 0.49 -2.97 16 25 N -0.28 -8.62 12.41 -48.60 -0.60 -9.23 16 26 C -0.17 -2.61 5.67 -10.79 -0.06 -2.67 16 27 C -0.17 -2.80 9.88 30.62 0.30 -2.50 16 28 C -0.15 -1.84 10.19 30.61 0.31 -1.53 16 29 H 0.07 0.64 8.08 -2.39 -0.02 0.62 16 30 H 0.03 0.57 8.14 -2.38 -0.02 0.55 16 31 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.41 6.60 8.46 -92.71 -0.78 5.81 16 33 H 0.09 1.99 8.14 -2.38 -0.02 1.97 16 34 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.21 4.71 6.74 -2.91 -0.02 4.69 16 36 H 0.14 4.33 8.14 -2.39 -0.02 4.31 16 37 H 0.05 1.80 6.31 -2.39 -0.02 1.79 16 38 H 0.06 2.89 7.16 -2.39 -0.02 2.88 16 39 H 0.25 13.64 8.31 -92.71 -0.77 12.87 16 40 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 41 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 42 H 0.13 1.76 8.03 -2.39 -0.02 1.74 16 43 H 0.09 1.80 7.06 -2.39 -0.02 1.78 16 44 H 0.10 1.49 8.14 -2.38 -0.02 1.47 16 45 H 0.11 1.09 8.14 -2.39 -0.02 1.08 16 46 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -66.86 389.56 2.36 -64.51 By element: Atomic # 1 Polarization: 21.56 SS G_CDS: 0.22 Total: 21.78 kcal Atomic # 6 Polarization: 8.96 SS G_CDS: 7.15 Total: 16.11 kcal Atomic # 7 Polarization: -114.05 SS G_CDS: -6.24 Total: -120.29 kcal Atomic # 8 Polarization: -25.38 SS G_CDS: -0.81 Total: -26.19 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.08 kcal Total: -66.86 2.36 -64.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107165131.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.339 kcal (2) G-P(sol) polarization free energy of solvation -66.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds