Wall clock time and date at job start Tue Mar 31 2020 18:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42908 * 113.99941 * 2 1 4 4 H 1.08996 * 109.46875 * 30.15988 * 3 2 1 5 5 C 1.50695 * 109.47073 * 270.15696 * 3 2 1 6 6 O 1.21281 * 120.00234 * 0.02562 * 5 3 2 7 7 N 1.34784 * 119.99799 * 180.02562 * 5 3 2 8 8 C 1.46498 * 119.99641 * 180.27953 * 7 5 3 9 9 H 1.08998 * 110.64704 * 36.41002 * 8 7 5 10 10 C 1.54326 * 110.71635 * 273.26613 * 8 7 5 11 11 N 1.47025 * 107.26825 * 219.44533 * 10 8 7 12 12 C 1.36942 * 125.64619 * 178.90643 * 11 10 8 13 13 H 1.07996 * 120.00065 * 180.02562 * 12 11 10 14 14 C 1.38811 * 119.99685 * 0.02779 * 12 11 10 15 15 N 1.31614 * 120.00342 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 119.99755 * 180.02562 * 14 12 11 17 17 H 1.48510 * 109.46934 * 359.97438 * 16 14 12 18 18 H 1.48494 * 109.47608 * 119.99881 * 16 14 12 19 19 H 1.48506 * 109.47051 * 240.00242 * 16 14 12 20 20 C 1.47420 * 108.70690 * 358.94458 * 11 10 8 21 21 C 1.54910 * 104.83226 * 24.12644 * 20 11 10 22 22 H 1.08999 * 111.00950 * 204.91900 * 21 20 11 23 23 N 1.46499 * 111.00481 * 81.06140 * 21 20 11 24 24 C 1.35311 * 125.87178 * 332.52450 * 23 21 20 25 25 C 1.35348 * 106.17989 * 179.89874 * 24 23 21 26 26 N 1.33776 * 106.49242 * 0.35402 * 25 24 23 27 27 N 1.28634 * 108.88801 * 359.77274 * 26 25 24 28 28 C 1.52995 * 109.46675 * 150.15750 * 3 2 1 29 29 C 1.53002 * 117.50496 * 3.57722 * 28 3 2 30 30 C 1.52995 * 60.00043 * 252.50765 * 29 28 3 31 31 H 1.08996 * 109.47069 * 304.33651 * 1 2 3 32 32 H 1.09006 * 109.47109 * 64.33396 * 1 2 3 33 33 H 1.09001 * 109.47145 * 184.33230 * 1 2 3 34 34 H 0.96999 * 119.99919 * 359.97438 * 7 5 3 35 35 H 1.08994 * 109.88764 * 338.86426 * 10 8 7 36 36 H 1.09004 * 109.88211 * 100.03628 * 10 8 7 37 37 H 0.96998 * 119.99973 * 180.02562 * 15 14 12 38 38 H 1.08999 * 110.36941 * 142.96403 * 20 11 10 39 39 H 1.08994 * 110.36810 * 265.17749 * 20 11 10 40 40 H 1.07998 * 126.90974 * 0.02562 * 24 23 21 41 41 H 1.07997 * 126.75441 * 180.11976 * 25 24 23 42 42 H 1.09007 * 115.54967 * 149.28516 * 28 3 2 43 43 H 1.09006 * 117.49307 * 0.02562 * 29 28 3 44 44 H 1.08998 * 117.49832 * 145.01723 * 29 28 3 45 45 H 1.09000 * 117.49987 * 252.50538 * 30 29 28 46 46 H 1.09000 * 117.49651 * 107.48407 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3463 1.9988 0.5163 5 6 2.2110 1.7660 -1.4208 6 8 1.8877 1.0473 -2.3426 7 7 2.7498 2.9767 -1.6670 8 6 2.9393 3.4268 -3.0482 9 1 2.1186 3.0861 -3.6795 10 6 4.2938 2.9360 -3.6014 11 7 4.8579 4.0287 -4.4073 12 6 6.0639 4.0018 -5.0555 13 1 6.3905 4.8599 -5.6241 14 6 6.8664 2.8716 -4.9818 15 7 6.4685 1.8260 -4.2885 16 14 8.5118 2.8352 -5.8655 17 1 8.7247 4.1260 -6.5685 18 1 9.5999 2.6238 -4.8774 19 1 8.5184 1.7269 -6.8539 20 6 3.9108 5.1583 -4.4011 21 6 3.0785 4.9710 -3.1081 22 1 2.1026 5.4479 -3.1989 23 7 3.8020 5.4786 -1.9397 24 6 5.1469 5.5532 -1.8108 25 6 5.3797 6.0801 -0.5860 26 7 4.1817 6.2919 -0.0297 27 7 3.2676 5.9252 -0.8572 28 6 3.3606 1.2624 0.7178 29 6 3.8611 -0.1005 1.2005 30 6 3.3566 0.9311 2.2115 31 1 -0.3633 0.5796 0.8485 32 1 -0.3634 0.4451 -0.9263 33 1 -0.3633 -1.0247 0.0776 34 1 3.0080 3.5516 -0.9297 35 1 4.9664 2.6976 -2.7774 36 1 4.1421 2.0553 -4.2255 37 1 7.0295 1.0364 -4.2367 38 1 4.4498 6.1052 -4.3714 39 1 3.2657 5.1173 -5.2787 40 1 5.8859 5.2545 -2.5395 41 1 6.3431 6.2853 -0.1433 42 1 4.1049 1.9752 0.3625 43 1 3.2283 -0.9666 1.0062 44 1 4.9347 -0.2847 1.1625 45 1 4.0983 1.4255 2.8388 46 1 2.3918 0.7437 2.6827 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001128944967.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:59 Heat of formation + Delta-G solvation = 93.303899 kcal Electronic energy + Delta-G solvation = -30909.443795 eV Core-core repulsion = 26839.328772 eV Total energy + Delta-G solvation = -4070.115022 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.96399 -40.11565 -38.49897 -37.28857 -36.12340 -34.17005 -33.41392 -31.77806 -30.56949 -29.64265 -28.44904 -27.42619 -26.08720 -24.81180 -22.71375 -22.32609 -22.21744 -21.60872 -20.66182 -20.20450 -19.74009 -18.02995 -17.40466 -17.00885 -16.60627 -16.15433 -15.70078 -15.30974 -14.97061 -14.79516 -14.47670 -14.35412 -14.16567 -13.92135 -13.59506 -13.44913 -13.18236 -12.83713 -12.51960 -12.36235 -11.83596 -11.64092 -11.56053 -11.39072 -11.35297 -11.29289 -11.12032 -10.86130 -10.68965 -10.61442 -10.55147 -10.42304 -10.21478 -10.15531 -10.00376 -9.78124 -9.09932 -8.97663 -8.85343 -8.70776 -7.15460 -5.91832 -3.31830 1.97987 2.60740 2.76013 2.91455 3.19214 3.28661 3.34449 3.37639 3.68540 3.89321 4.28672 4.47524 4.60552 4.71262 4.79961 4.85368 4.95842 5.06628 5.10229 5.14751 5.24719 5.30863 5.36856 5.42920 5.47261 5.59526 5.63595 5.66033 5.71583 5.77333 5.82449 5.93167 6.04309 6.10122 6.13100 6.17349 6.28405 6.51652 6.55135 6.93887 7.03323 7.29519 7.32884 7.61839 7.68856 7.96891 8.43156 8.84201 8.94957 9.55040 10.14318 11.17731 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010178 B = 0.004677 C = 0.004022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2750.283364 B = 5985.417922 C = 6959.377827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.353 6.353 3 C 0.108 3.892 4 H 0.088 0.912 5 C 0.498 3.502 6 O -0.519 6.519 7 N -0.714 5.714 8 C 0.111 3.889 9 H 0.109 0.891 10 C 0.169 3.831 11 N -0.602 5.602 12 C -0.247 4.247 13 H 0.083 0.917 14 C 0.004 3.996 15 N -0.910 5.910 16 Si 0.913 3.087 17 H -0.278 1.278 18 H -0.289 1.289 19 H -0.289 1.289 20 C 0.128 3.872 21 C 0.114 3.886 22 H 0.119 0.881 23 N -0.276 5.276 24 C -0.004 4.004 25 C -0.076 4.076 26 N -0.276 5.276 27 N -0.112 5.112 28 C -0.161 4.161 29 C -0.154 4.154 30 C -0.170 4.170 31 H 0.040 0.960 32 H 0.047 0.953 33 H 0.088 0.912 34 H 0.398 0.602 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.256 0.744 38 H 0.059 0.941 39 H 0.054 0.946 40 H 0.204 0.796 41 H 0.184 0.816 42 H 0.117 0.883 43 H 0.108 0.892 44 H 0.095 0.905 45 H 0.097 0.903 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.078 2.366 9.462 12.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.270 6.270 3 C 0.046 3.954 4 H 0.105 0.895 5 C 0.283 3.717 6 O -0.394 6.394 7 N -0.369 5.369 8 C 0.004 3.996 9 H 0.127 0.873 10 C 0.044 3.956 11 N -0.329 5.329 12 C -0.374 4.374 13 H 0.101 0.899 14 C -0.195 4.195 15 N -0.555 5.555 16 Si 0.743 3.257 17 H -0.204 1.204 18 H -0.216 1.216 19 H -0.216 1.216 20 C 0.000 4.000 21 C 0.010 3.990 22 H 0.137 0.863 23 N -0.069 5.069 24 C -0.155 4.155 25 C -0.233 4.233 26 N -0.143 5.143 27 N -0.091 5.091 28 C -0.180 4.180 29 C -0.191 4.191 30 C -0.207 4.207 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.107 0.893 34 H 0.233 0.767 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.067 0.933 38 H 0.077 0.923 39 H 0.071 0.929 40 H 0.221 0.779 41 H 0.201 0.799 42 H 0.135 0.865 43 H 0.126 0.874 44 H 0.113 0.887 45 H 0.115 0.885 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -9.377 1.766 9.496 13.462 hybrid contribution 1.836 0.167 -0.945 2.072 sum -7.541 1.933 8.551 11.564 Atomic orbital electron populations 1.22863 0.80835 1.02936 1.00160 1.87984 1.19824 1.24867 1.94360 1.21383 0.95314 0.86539 0.92135 0.89461 1.21102 0.77429 0.81254 0.91882 1.90717 1.49631 1.53369 1.45688 1.45899 1.64123 1.18520 1.08361 1.22850 1.02838 0.90264 0.83641 0.87325 1.21634 0.87534 0.91036 0.95425 1.44496 1.18229 1.10902 1.59311 1.19028 0.92147 1.00424 1.25814 0.89873 1.24853 0.98959 0.95985 0.99674 1.69955 1.37379 1.04793 1.43368 0.86046 0.83172 0.77565 0.78900 1.20360 1.21552 1.21582 1.21925 0.92459 0.94069 0.91517 1.23340 0.96637 0.95183 0.83856 0.86314 1.47266 1.06139 1.40133 1.13390 1.24204 0.86601 1.03549 1.01176 1.23546 0.98278 1.07159 0.94288 1.75007 0.98186 1.17733 1.23351 1.78206 1.22552 1.16504 0.91847 1.22243 0.96474 1.02536 0.96720 1.22864 1.01442 0.93148 1.01632 1.22963 1.03085 1.03791 0.90853 0.94139 0.93469 0.89326 0.76682 0.92328 0.92258 0.93327 0.92280 0.92859 0.77937 0.79866 0.86500 0.87397 0.88668 0.88478 0.88767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.83 101.05 1.09 1.42 16 2 O -0.35 -5.18 8.25 -55.14 -0.45 -5.64 16 3 C 0.11 1.54 2.87 -27.89 -0.08 1.46 16 4 H 0.09 1.05 7.72 -51.93 -0.40 0.65 16 5 C 0.50 8.75 7.17 -10.98 -0.08 8.67 16 6 O -0.52 -11.03 16.19 -14.35 -0.23 -11.26 16 7 N -0.71 -11.91 4.82 -52.03 -0.25 -12.16 16 8 C 0.11 1.95 3.11 -66.09 -0.21 1.74 16 9 H 0.11 1.92 7.69 -51.93 -0.40 1.52 16 10 C 0.17 3.74 4.74 -3.06 -0.01 3.72 16 11 N -0.60 -12.99 2.23 -170.08 -0.38 -13.37 16 12 C -0.25 -5.99 10.06 -15.06 -0.15 -6.14 16 13 H 0.08 1.95 7.83 -52.49 -0.41 1.54 16 14 C 0.00 0.09 5.49 -17.43 -0.10 -0.01 16 15 N -0.91 -24.91 10.31 55.49 0.57 -24.34 16 16 Si 0.91 20.51 29.55 -169.99 -5.02 15.49 16 17 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 18 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 19 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 20 C 0.13 2.15 6.22 -2.53 -0.02 2.14 16 21 C 0.11 1.74 4.06 -65.78 -0.27 1.47 16 22 H 0.12 1.51 8.14 -51.93 -0.42 1.09 16 23 N -0.28 -4.42 2.46 -52.68 -0.13 -4.55 16 24 C 0.00 -0.06 10.01 -17.05 -0.17 -0.23 16 25 C -0.08 -1.16 12.05 -17.74 -0.21 -1.38 16 26 N -0.28 -4.63 12.41 30.23 0.38 -4.26 16 27 N -0.11 -1.86 12.18 60.35 0.74 -1.12 16 28 C -0.16 -2.22 5.62 -90.62 -0.51 -2.72 16 29 C -0.15 -2.00 9.87 -26.73 -0.26 -2.26 16 30 C -0.17 -1.89 10.24 -26.73 -0.27 -2.16 16 31 H 0.04 0.36 7.99 -51.93 -0.41 -0.05 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.40 6.39 6.38 -40.82 -0.26 6.13 16 35 H 0.06 1.46 7.27 -51.93 -0.38 1.09 16 36 H 0.06 1.57 7.51 -51.93 -0.39 1.18 16 37 H 0.26 6.96 8.31 -40.82 -0.34 6.63 16 38 H 0.06 0.96 7.87 -51.93 -0.41 0.55 16 39 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.20 3.71 6.81 -52.49 -0.36 3.35 16 41 H 0.18 2.24 8.06 -52.49 -0.42 1.82 16 42 H 0.12 1.75 7.64 -51.93 -0.40 1.35 16 43 H 0.11 1.45 7.02 -51.93 -0.36 1.09 16 44 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 45 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 46 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 LS Contribution 377.13 15.07 5.68 5.68 Total: -1.00 -30.11 377.13 -7.05 -37.16 By element: Atomic # 1 Polarization: 19.34 SS G_CDS: -6.70 Total: 12.64 kcal Atomic # 6 Polarization: 6.97 SS G_CDS: -1.25 Total: 5.73 kcal Atomic # 7 Polarization: -60.72 SS G_CDS: 0.92 Total: -59.80 kcal Atomic # 8 Polarization: -16.21 SS G_CDS: -0.69 Total: -16.89 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.11 -7.05 -37.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128944967.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.463 kcal (2) G-P(sol) polarization free energy of solvation -30.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds