Wall clock time and date at job start Tue Mar 31 2020 18:31:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42908 * 113.99941 * 2 1 4 4 H 1.08996 * 109.46875 * 30.15988 * 3 2 1 5 5 C 1.50695 * 109.47073 * 270.15696 * 3 2 1 6 6 O 1.21281 * 120.00234 * 0.02562 * 5 3 2 7 7 N 1.34784 * 119.99799 * 180.02562 * 5 3 2 8 8 C 1.46498 * 119.99641 * 180.27953 * 7 5 3 9 9 H 1.08998 * 110.64704 * 36.41002 * 8 7 5 10 10 C 1.54326 * 110.71635 * 273.26613 * 8 7 5 11 11 N 1.47025 * 107.26825 * 219.44533 * 10 8 7 12 12 C 1.36942 * 125.64619 * 178.90643 * 11 10 8 13 13 H 1.07996 * 120.00065 * 180.02562 * 12 11 10 14 14 C 1.38811 * 119.99685 * 0.02779 * 12 11 10 15 15 N 1.31614 * 120.00342 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 119.99755 * 180.02562 * 14 12 11 17 17 H 1.48510 * 109.46934 * 359.97438 * 16 14 12 18 18 H 1.48494 * 109.47608 * 119.99881 * 16 14 12 19 19 H 1.48506 * 109.47051 * 240.00242 * 16 14 12 20 20 C 1.47420 * 108.70690 * 358.94458 * 11 10 8 21 21 C 1.54910 * 104.83226 * 24.12644 * 20 11 10 22 22 H 1.08999 * 111.00950 * 204.91900 * 21 20 11 23 23 N 1.46499 * 111.00481 * 81.06140 * 21 20 11 24 24 C 1.35311 * 125.87178 * 332.52450 * 23 21 20 25 25 C 1.35348 * 106.17989 * 179.89874 * 24 23 21 26 26 N 1.33776 * 106.49242 * 0.35402 * 25 24 23 27 27 N 1.28634 * 108.88801 * 359.77274 * 26 25 24 28 28 C 1.52995 * 109.46675 * 150.15750 * 3 2 1 29 29 C 1.53002 * 117.50496 * 3.57722 * 28 3 2 30 30 C 1.52995 * 60.00043 * 252.50765 * 29 28 3 31 31 H 1.08996 * 109.47069 * 304.33651 * 1 2 3 32 32 H 1.09006 * 109.47109 * 64.33396 * 1 2 3 33 33 H 1.09001 * 109.47145 * 184.33230 * 1 2 3 34 34 H 0.96999 * 119.99919 * 359.97438 * 7 5 3 35 35 H 1.08994 * 109.88764 * 338.86426 * 10 8 7 36 36 H 1.09004 * 109.88211 * 100.03628 * 10 8 7 37 37 H 0.96998 * 119.99973 * 180.02562 * 15 14 12 38 38 H 1.08999 * 110.36941 * 142.96403 * 20 11 10 39 39 H 1.08994 * 110.36810 * 265.17749 * 20 11 10 40 40 H 1.07998 * 126.90974 * 0.02562 * 24 23 21 41 41 H 1.07997 * 126.75441 * 180.11976 * 25 24 23 42 42 H 1.09007 * 115.54967 * 149.28516 * 28 3 2 43 43 H 1.09006 * 117.49307 * 0.02562 * 29 28 3 44 44 H 1.08998 * 117.49832 * 145.01723 * 29 28 3 45 45 H 1.09000 * 117.49987 * 252.50538 * 30 29 28 46 46 H 1.09000 * 117.49651 * 107.48407 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3463 1.9988 0.5163 5 6 2.2110 1.7660 -1.4208 6 8 1.8877 1.0473 -2.3426 7 7 2.7498 2.9767 -1.6670 8 6 2.9393 3.4268 -3.0482 9 1 2.1186 3.0861 -3.6795 10 6 4.2938 2.9360 -3.6014 11 7 4.8579 4.0287 -4.4073 12 6 6.0639 4.0018 -5.0555 13 1 6.3905 4.8599 -5.6241 14 6 6.8664 2.8716 -4.9818 15 7 6.4685 1.8260 -4.2885 16 14 8.5118 2.8352 -5.8655 17 1 8.7247 4.1260 -6.5685 18 1 9.5999 2.6238 -4.8774 19 1 8.5184 1.7269 -6.8539 20 6 3.9108 5.1583 -4.4011 21 6 3.0785 4.9710 -3.1081 22 1 2.1026 5.4479 -3.1989 23 7 3.8020 5.4786 -1.9397 24 6 5.1469 5.5532 -1.8108 25 6 5.3797 6.0801 -0.5860 26 7 4.1817 6.2919 -0.0297 27 7 3.2676 5.9252 -0.8572 28 6 3.3606 1.2624 0.7178 29 6 3.8611 -0.1005 1.2005 30 6 3.3566 0.9311 2.2115 31 1 -0.3633 0.5796 0.8485 32 1 -0.3634 0.4451 -0.9263 33 1 -0.3633 -1.0247 0.0776 34 1 3.0080 3.5516 -0.9297 35 1 4.9664 2.6976 -2.7774 36 1 4.1421 2.0553 -4.2255 37 1 7.0295 1.0364 -4.2367 38 1 4.4498 6.1052 -4.3714 39 1 3.2657 5.1173 -5.2787 40 1 5.8859 5.2545 -2.5395 41 1 6.3431 6.2853 -0.1433 42 1 4.1049 1.9752 0.3625 43 1 3.2283 -0.9666 1.0062 44 1 4.9347 -0.2847 1.1625 45 1 4.0983 1.4255 2.8388 46 1 2.3918 0.7437 2.6827 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001128944967.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:58 Heat of formation + Delta-G solvation = 74.411857 kcal Electronic energy + Delta-G solvation = -30910.263015 eV Core-core repulsion = 26839.328772 eV Total energy + Delta-G solvation = -4070.934243 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.25747 -41.43871 -39.84838 -38.64562 -37.15239 -35.79348 -34.84298 -33.45821 -31.85567 -31.07921 -29.84553 -28.85155 -27.20855 -26.45091 -24.11776 -23.52398 -23.29080 -22.93276 -22.09234 -21.54486 -21.13714 -19.43188 -18.82298 -18.59522 -17.76522 -17.38003 -16.97028 -16.75181 -16.45170 -16.02069 -15.92523 -15.67247 -15.54797 -15.25177 -14.96900 -14.84963 -14.42560 -14.07369 -13.96584 -13.89057 -13.35458 -13.11633 -12.88745 -12.74355 -12.59978 -12.55211 -12.48617 -12.32141 -12.25081 -12.04099 -11.88762 -11.86177 -11.80198 -11.42850 -11.17733 -11.12045 -10.77765 -10.35810 -10.25349 -10.20833 -9.01454 -7.87192 -5.26778 0.66036 1.30346 1.40546 1.47489 1.49591 1.58363 1.65681 1.89813 2.46088 2.60936 2.89263 3.12427 3.33171 3.38449 3.44181 3.56045 3.68589 3.75626 3.82934 3.91757 4.03903 4.17301 4.20896 4.24329 4.34359 4.43934 4.46535 4.46818 4.53206 4.67855 4.78020 4.79639 4.79978 4.84436 4.92280 5.07019 5.14220 5.28755 5.30961 5.41812 5.48464 5.68231 5.73086 5.92831 6.08311 6.32017 6.99431 7.06377 7.55109 7.68350 8.27747 9.21293 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010178 B = 0.004677 C = 0.004022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2750.283364 B = 5985.417922 C = 6959.377827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.373 6.373 3 C 0.116 3.884 4 H 0.118 0.882 5 C 0.492 3.508 6 O -0.564 6.564 7 N -0.706 5.706 8 C 0.119 3.881 9 H 0.110 0.890 10 C 0.191 3.809 11 N -0.614 5.614 12 C -0.236 4.236 13 H 0.096 0.904 14 C -0.055 4.055 15 N -0.946 5.946 16 Si 0.972 3.028 17 H -0.259 1.259 18 H -0.295 1.295 19 H -0.303 1.303 20 C 0.127 3.873 21 C 0.128 3.872 22 H 0.159 0.841 23 N -0.274 5.274 24 C -0.018 4.018 25 C -0.064 4.064 26 N -0.288 5.288 27 N -0.111 5.111 28 C -0.182 4.182 29 C -0.168 4.168 30 C -0.135 4.135 31 H 0.070 0.930 32 H 0.031 0.969 33 H 0.104 0.896 34 H 0.403 0.597 35 H 0.022 0.978 36 H 0.003 0.997 37 H 0.244 0.756 38 H 0.073 0.927 39 H 0.077 0.923 40 H 0.185 0.815 41 H 0.212 0.788 42 H 0.099 0.901 43 H 0.101 0.899 44 H 0.092 0.908 45 H 0.112 0.888 46 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.127 4.590 10.885 14.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.290 6.290 3 C 0.054 3.946 4 H 0.135 0.865 5 C 0.279 3.721 6 O -0.442 6.442 7 N -0.360 5.360 8 C 0.012 3.988 9 H 0.128 0.872 10 C 0.065 3.935 11 N -0.342 5.342 12 C -0.364 4.364 13 H 0.114 0.886 14 C -0.249 4.249 15 N -0.594 5.594 16 Si 0.801 3.199 17 H -0.183 1.183 18 H -0.223 1.223 19 H -0.230 1.230 20 C 0.001 3.999 21 C 0.025 3.975 22 H 0.177 0.823 23 N -0.068 5.068 24 C -0.170 4.170 25 C -0.220 4.220 26 N -0.154 5.154 27 N -0.090 5.090 28 C -0.201 4.201 29 C -0.205 4.205 30 C -0.172 4.172 31 H 0.088 0.912 32 H 0.050 0.950 33 H 0.123 0.877 34 H 0.240 0.760 35 H 0.040 0.960 36 H 0.022 0.978 37 H 0.053 0.947 38 H 0.091 0.909 39 H 0.095 0.905 40 H 0.202 0.798 41 H 0.229 0.771 42 H 0.117 0.883 43 H 0.119 0.881 44 H 0.110 0.890 45 H 0.131 0.869 46 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -10.443 4.060 10.930 15.653 hybrid contribution 2.136 -0.498 -1.401 2.603 sum -8.306 3.562 9.529 13.133 Atomic orbital electron populations 1.23074 0.79155 1.04504 1.00620 1.87970 1.21772 1.25090 1.94217 1.21404 0.96265 0.87103 0.89786 0.86504 1.21916 0.76277 0.80737 0.93164 1.90691 1.51607 1.54440 1.47415 1.45833 1.63551 1.18540 1.08030 1.22568 0.99955 0.92157 0.84157 0.87184 1.21100 0.89251 0.89836 0.93320 1.44613 1.18425 1.12286 1.58849 1.19423 0.92664 1.00073 1.24249 0.88607 1.25568 1.02085 0.96132 1.01159 1.70195 1.38239 1.05221 1.45767 0.85112 0.79713 0.77645 0.77427 1.18327 1.22258 1.23048 1.22145 0.92099 0.92682 0.93023 1.23348 0.98005 0.93251 0.82899 0.82329 1.47299 1.05971 1.40011 1.13499 1.24049 0.86641 1.04704 1.01585 1.23979 0.99027 1.05536 0.93496 1.75015 0.98620 1.18266 1.23545 1.78184 1.22575 1.16412 0.91795 1.22199 0.96019 1.02668 0.99167 1.22882 1.01278 0.92956 1.03394 1.23063 1.04075 1.00968 0.89098 0.91190 0.94988 0.87741 0.76041 0.95982 0.97844 0.94705 0.90901 0.90532 0.79751 0.77101 0.88301 0.88088 0.88963 0.86944 0.86892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.47 10.83 113.37 1.23 1.70 16 2 O -0.37 -10.70 8.25 -129.94 -1.07 -11.77 16 3 C 0.12 3.22 2.87 29.84 0.09 3.31 16 4 H 0.12 2.52 7.72 -2.39 -0.02 2.50 16 5 C 0.49 17.55 7.17 87.65 0.63 18.18 16 6 O -0.56 -24.89 16.19 16.00 0.26 -24.63 16 7 N -0.71 -23.55 4.82 -436.90 -2.11 -25.66 16 8 C 0.12 4.20 3.11 46.18 0.14 4.34 16 9 H 0.11 3.91 7.69 -2.39 -0.02 3.89 16 10 C 0.19 8.84 4.74 86.73 0.41 9.25 16 11 N -0.61 -26.71 2.23 -692.00 -1.54 -28.25 16 12 C -0.24 -11.49 10.06 84.03 0.85 -10.64 16 13 H 0.10 4.36 7.83 -2.91 -0.02 4.33 16 14 C -0.06 -2.92 5.49 84.86 0.47 -2.45 16 15 N -0.95 -54.73 10.31 21.65 0.22 -54.50 16 16 Si 0.97 43.10 29.55 68.60 2.03 45.12 16 17 H -0.26 -10.54 7.11 99.48 0.71 -9.84 16 18 H -0.30 -13.28 7.11 99.48 0.71 -12.57 16 19 H -0.30 -13.98 7.11 99.48 0.71 -13.28 16 20 C 0.13 4.01 6.22 86.86 0.54 4.55 16 21 C 0.13 3.65 4.06 46.39 0.19 3.84 16 22 H 0.16 3.39 8.14 -2.39 -0.02 3.37 16 23 N -0.27 -8.26 2.46 -320.58 -0.79 -9.05 16 24 C -0.02 -0.58 10.01 83.49 0.84 0.26 16 25 C -0.06 -1.83 12.05 83.73 1.01 -0.82 16 26 N -0.29 -8.98 12.41 -58.26 -0.72 -9.70 16 27 N -0.11 -3.41 12.18 37.02 0.45 -2.95 16 28 C -0.18 -4.90 5.62 -10.79 -0.06 -4.97 16 29 C -0.17 -4.32 9.87 30.59 0.30 -4.02 16 30 C -0.14 -2.69 10.24 30.59 0.31 -2.37 16 31 H 0.07 1.05 7.99 -2.39 -0.02 1.03 16 32 H 0.03 0.76 8.14 -2.38 -0.02 0.74 16 33 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.40 12.65 6.38 -92.71 -0.59 12.05 16 35 H 0.02 1.17 7.27 -2.39 -0.02 1.15 16 36 H 0.00 0.19 7.51 -2.39 -0.02 0.17 16 37 H 0.24 14.11 8.31 -92.71 -0.77 13.34 16 38 H 0.07 2.17 7.87 -2.39 -0.02 2.15 16 39 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 40 H 0.19 6.72 6.81 -2.91 -0.02 6.70 16 41 H 0.21 4.62 8.06 -2.91 -0.02 4.60 16 42 H 0.10 3.01 7.64 -2.38 -0.02 2.99 16 43 H 0.10 2.73 7.02 -2.38 -0.02 2.71 16 44 H 0.09 2.36 8.14 -2.39 -0.02 2.35 16 45 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 46 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -69.23 377.13 4.07 -65.15 By element: Atomic # 1 Polarization: 35.68 SS G_CDS: 0.41 Total: 36.09 kcal Atomic # 6 Polarization: 13.23 SS G_CDS: 6.93 Total: 20.16 kcal Atomic # 7 Polarization: -125.64 SS G_CDS: -4.49 Total: -130.12 kcal Atomic # 8 Polarization: -35.59 SS G_CDS: -0.81 Total: -36.41 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.12 kcal Total: -69.23 4.07 -65.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128944967.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.567 kcal (2) G-P(sol) polarization free energy of solvation -69.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds