Wall clock time and date at job start Tue Mar 31 2020 18:32:02
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42902 * 1
3 3 C 1.42895 * 114.00192 * 2 1
4 4 H 1.09003 * 109.47538 * 24.89973 * 3 2 1
5 5 C 1.50699 * 109.47028 * 144.89712 * 3 2 1
6 6 O 1.21281 * 120.00246 * 5.00701 * 5 3 2
7 7 N 1.34776 * 120.00080 * 185.00013 * 5 3 2
8 8 C 1.46499 * 120.00240 * 180.02562 * 7 5 3
9 9 H 1.08998 * 110.92003 * 37.44737 * 8 7 5
10 10 C 1.54911 * 111.00418 * 273.54649 * 8 7 5
11 11 N 1.47422 * 104.83495 * 204.91152 * 10 8 7
12 12 C 1.36935 * 125.65172 * 204.15987 * 11 10 8
13 13 H 1.08000 * 120.00110 * 333.82019 * 12 11 10
14 14 C 1.38818 * 119.99984 * 153.81321 * 12 11 10
15 15 N 1.31614 * 119.99918 * 156.96566 * 14 12 11
16 16 Si 1.86805 * 119.99912 * 336.96750 * 14 12 11
17 17 H 1.48504 * 109.47062 * 91.31593 * 16 14 12
18 18 H 1.48497 * 109.46741 * 211.31563 * 16 14 12
19 19 H 1.48500 * 109.46848 * 331.31234 * 16 14 12
20 20 C 1.47027 * 108.70190 * 24.13073 * 11 10 8
21 21 C 1.54325 * 107.39948 * 358.86084 * 20 11 10
22 22 H 1.08996 * 110.72282 * 219.51906 * 21 20 11
23 23 N 1.46508 * 110.71908 * 96.25067 * 21 20 11
24 24 C 1.35307 * 125.86572 * 326.16094 * 23 21 20
25 25 C 1.35356 * 106.17529 * 179.90576 * 24 23 21
26 26 N 1.33774 * 106.49303 * 0.35818 * 25 24 23
27 27 N 1.28631 * 108.88883 * 359.77141 * 26 25 24
28 28 C 1.53001 * 109.47367 * 264.89734 * 3 2 1
29 29 C 1.53002 * 117.49764 * 9.19562 * 28 3 2
30 30 C 1.53001 * 117.50081 * 300.53225 * 28 3 2
31 31 H 1.08992 * 109.46833 * 294.85226 * 1 2 3
32 32 H 1.09001 * 109.46646 * 54.84704 * 1 2 3
33 33 H 1.08990 * 109.47448 * 174.84371 * 1 2 3
34 34 H 0.97001 * 120.00112 * 0.02562 * 7 5 3
35 35 H 1.09002 * 110.36625 * 86.07236 * 10 8 7
36 36 H 1.08998 * 110.36723 * 323.75515 * 10 8 7
37 37 H 0.97004 * 120.00102 * 180.02562 * 15 14 12
38 38 H 1.08998 * 109.88054 * 118.35375 * 20 11 10
39 39 H 1.09000 * 109.88412 * 239.36886 * 20 11 10
40 40 H 1.08001 * 126.91712 * 0.02637 * 24 23 21
41 41 H 1.07993 * 126.75147 * 180.12591 * 25 24 23
42 42 H 1.09001 * 115.54825 * 154.86011 * 28 3 2
43 43 H 1.09001 * 117.49829 * 359.97438 * 29 28 3
44 44 H 1.08996 * 117.50198 * 145.02207 * 29 28 3
45 45 H 1.08999 * 117.50030 * 214.98004 * 30 28 3
46 46 H 1.09000 * 117.49253 * 0.02562 * 30 28 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0103 1.3054 0.0000
4 1 1.3066 2.0166 0.4327
5 6 3.2765 1.2914 0.8170
6 8 3.6936 0.2472 1.2714
7 7 3.9455 2.4394 1.0428
8 6 5.1767 2.4258 1.8365
9 1 5.7638 1.5312 1.6290
10 6 4.8637 2.5459 3.3489
11 7 6.0841 3.1218 3.9424
12 6 6.4750 2.9909 5.2483
13 1 5.7371 2.8207 6.0183
14 6 7.8196 3.0768 5.5822
15 7 8.1739 3.4046 6.8067
16 14 9.1262 2.7272 4.2937
17 1 9.4992 3.9922 3.6111
18 1 10.3252 2.1465 4.9496
19 1 8.5928 1.7650 3.2963
20 6 6.8125 3.8595 2.8998
21 6 6.0160 3.7096 1.5865
22 1 6.6896 3.5742 0.7403
23 7 5.1423 4.8664 1.3753
24 6 4.5187 5.5763 2.3438
25 6 3.8230 6.5490 1.7098
26 7 4.0457 6.3838 0.4011
27 7 4.8313 5.3786 0.2361
28 6 2.3350 1.7192 -1.4368
29 6 1.8100 0.8281 -2.5643
30 6 3.3028 0.8345 -2.2252
31 1 -0.3633 0.4319 0.9324
32 1 -0.3633 0.5917 -0.8403
33 1 -0.3634 -1.0234 -0.0923
34 1 3.6118 3.2747 0.6796
35 1 4.6628 1.5625 3.7740
36 1 4.0142 3.2099 3.5089
37 1 9.1136 3.4650 7.0400
38 1 6.8837 4.9126 3.1720
39 1 7.8110 3.4399 2.7777
40 1 4.5678 5.4030 3.4087
41 1 3.2062 7.3068 2.1698
42 1 2.3719 2.7931 -1.6198
43 1 1.2337 -0.0532 -2.2825
44 1 1.5021 1.3156 -3.4892
45 1 3.9762 1.3263 -2.9271
46 1 3.7078 -0.0425 -1.7203
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001128944968.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:32:02
Heat of formation + Delta-G solvation = 100.040819 kcal
Electronic energy + Delta-G solvation = -30574.883595 eV
Core-core repulsion = 26505.060708 eV
Total energy + Delta-G solvation = -4069.822888 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 335.174 amu
Computer time = 0.94 seconds
Orbital eigenvalues (eV)
-43.25043 -40.40659 -38.89590 -37.66140 -36.10500 -34.44555 -33.64105 -32.08858
-30.87234 -29.98621 -29.04305 -27.89623 -26.27743 -24.80984 -23.12937 -22.58585
-22.49822 -21.86628 -20.78292 -20.54912 -20.09323 -18.09369 -17.63246 -17.21010
-17.07813 -16.40423 -15.96134 -15.76903 -15.41438 -14.95296 -14.83392 -14.62334
-14.53585 -13.88387 -13.82323 -13.66576 -13.42209 -13.18290 -12.95678 -12.74990
-12.19793 -12.05540 -11.74053 -11.66061 -11.63643 -11.58907 -11.42284 -11.18744
-10.92256 -10.87943 -10.82899 -10.66154 -10.37118 -10.08227 -10.00357 -9.72476
-9.52337 -9.25484 -9.08991 -8.80261 -7.31005 -6.19210 -3.56685 1.69179
2.31110 2.53100 2.66011 2.72551 3.14025 3.31097 3.33725 3.44513
3.77603 4.26211 4.30997 4.32704 4.39754 4.53068 4.60308 4.60759
4.75544 4.89720 4.94729 5.02735 5.03319 5.13653 5.14898 5.17065
5.23416 5.34393 5.38953 5.40457 5.44220 5.47692 5.66174 5.82694
5.87924 5.89113 6.00583 6.03130 6.15704 6.25547 6.34561 6.43085
6.71379 6.75927 7.37551 7.43814 8.08186 8.15656 8.57700 8.59354
9.42268 9.85736 10.96219
Molecular weight = 335.17amu
Principal moments of inertia in cm(-1)
A = 0.012760 B = 0.004102 C = 0.003551
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2193.745204 B = 6824.508311 C = 7882.883855
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.026 3.974
2 O -0.354 6.354
3 C 0.104 3.896
4 H 0.089 0.911
5 C 0.521 3.479
6 O -0.511 6.511
7 N -0.716 5.716
8 C 0.125 3.875
9 H 0.121 0.879
10 C 0.118 3.882
11 N -0.599 5.599
12 C -0.253 4.253
13 H 0.095 0.905
14 C 0.036 3.964
15 N -0.893 5.893
16 Si 0.873 3.127
17 H -0.284 1.284
18 H -0.295 1.295
19 H -0.271 1.271
20 C 0.115 3.885
21 C 0.120 3.880
22 H 0.127 0.873
23 N -0.280 5.280
24 C -0.021 4.021
25 C -0.065 4.065
26 N -0.274 5.274
27 N -0.099 5.099
28 C -0.186 4.186
29 C -0.163 4.163
30 C -0.164 4.164
31 H 0.044 0.956
32 H 0.046 0.954
33 H 0.090 0.910
34 H 0.398 0.602
35 H 0.068 0.932
36 H 0.036 0.964
37 H 0.267 0.733
38 H 0.060 0.940
39 H 0.054 0.946
40 H 0.196 0.804
41 H 0.188 0.812
42 H 0.117 0.883
43 H 0.103 0.897
44 H 0.094 0.906
45 H 0.096 0.904
46 H 0.100 0.900
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.314 -0.030 -15.463 20.405
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.071 4.071
2 O -0.271 6.271
3 C 0.042 3.958
4 H 0.107 0.893
5 C 0.306 3.694
6 O -0.385 6.385
7 N -0.370 5.370
8 C 0.018 3.982
9 H 0.138 0.862
10 C -0.008 4.008
11 N -0.327 5.327
12 C -0.380 4.380
13 H 0.113 0.887
14 C -0.165 4.165
15 N -0.534 5.534
16 Si 0.703 3.297
17 H -0.212 1.212
18 H -0.223 1.223
19 H -0.196 1.196
20 C -0.011 4.011
21 C 0.017 3.983
22 H 0.145 0.855
23 N -0.074 5.074
24 C -0.172 4.172
25 C -0.222 4.222
26 N -0.141 5.141
27 N -0.078 5.078
28 C -0.205 4.205
29 C -0.200 4.200
30 C -0.201 4.201
31 H 0.063 0.937
32 H 0.065 0.935
33 H 0.109 0.891
34 H 0.233 0.767
35 H 0.086 0.914
36 H 0.054 0.946
37 H 0.077 0.923
38 H 0.078 0.922
39 H 0.071 0.929
40 H 0.213 0.787
41 H 0.205 0.795
42 H 0.135 0.865
43 H 0.121 0.879
44 H 0.113 0.887
45 H 0.114 0.886
46 H 0.118 0.882
Dipole moment (debyes) X Y Z Total
from point charges -12.550 -1.079 -16.426 20.699
hybrid contribution 0.565 0.565 0.469 0.926
sum -11.985 -0.514 -15.957 19.963
Atomic orbital electron populations
1.22937 0.80589 1.03202 1.00340 1.88026 1.19710 1.24775 1.94585
1.21339 0.93849 0.86926 0.93664 0.89279 1.20257 0.85231 0.83736
0.80163 1.90752 1.67318 1.30735 1.49696 1.45758 1.26300 1.10222
1.54765 1.22742 0.85473 0.96815 0.93205 0.86172 1.22210 0.90913
0.98702 0.88987 1.44631 1.23821 1.57402 1.06875 1.18556 0.92246
1.47382 0.79771 0.88717 1.25177 0.96897 0.98767 0.95693 1.69820
1.17245 1.47265 1.19093 0.87043 0.82067 0.78701 0.81911 1.21157
1.22270 1.19646 1.22024 0.95029 0.98549 0.85479 1.23190 0.91326
0.81649 1.02107 0.85496 1.47456 1.32321 1.22418 1.05174 1.23957
0.99053 0.95605 0.98600 1.23578 1.05736 1.02394 0.90452 1.75061
1.11602 1.10090 1.17325 1.78291 1.14443 1.07692 1.07417 1.22717
1.08030 0.98308 0.91425 1.22952 0.97512 1.01792 0.97738 1.22938
0.92675 1.01931 1.02591 0.93735 0.93494 0.89111 0.76661 0.91351
0.94572 0.92278 0.92203 0.92927 0.78684 0.79509 0.86458 0.87867
0.88732 0.88580 0.88191
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.21 9.99 101.05 1.01 1.22 16
2 O -0.35 -4.39 8.59 -55.09 -0.47 -4.87 16
3 C 0.10 1.21 2.96 -27.88 -0.08 1.12 16
4 H 0.09 0.86 7.76 -51.93 -0.40 0.46 16
5 C 0.52 7.71 6.84 -10.99 -0.08 7.63 16
6 O -0.51 -9.65 16.25 -14.30 -0.23 -9.88 16
7 N -0.72 -9.85 5.14 -51.60 -0.27 -10.11 16
8 C 0.12 1.95 3.18 -65.65 -0.21 1.74 16
9 H 0.12 2.02 7.73 -51.93 -0.40 1.62 16
10 C 0.12 2.13 6.41 -2.53 -0.02 2.12 16
11 N -0.60 -12.62 3.09 -170.07 -0.53 -13.14 16
12 C -0.25 -6.49 10.52 -15.06 -0.16 -6.65 16
13 H 0.10 2.61 8.06 -52.49 -0.42 2.19 16
14 C 0.04 0.96 5.42 -17.43 -0.09 0.87 16
15 N -0.89 -25.67 13.97 55.49 0.78 -24.89 16
16 Si 0.87 20.59 24.58 -169.99 -4.18 16.41 16
17 H -0.28 -6.45 7.01 56.52 0.40 -6.06 16
18 H -0.30 -7.18 7.11 56.52 0.40 -6.78 16
19 H -0.27 -6.20 6.94 56.52 0.39 -5.81 16
20 C 0.12 2.15 4.92 -3.06 -0.02 2.13 16
21 C 0.12 1.81 3.99 -65.96 -0.26 1.54 16
22 H 0.13 1.68 8.14 -51.93 -0.42 1.26 16
23 N -0.28 -4.03 2.27 -52.85 -0.12 -4.15 16
24 C -0.02 -0.29 9.24 -17.05 -0.16 -0.45 16
25 C -0.06 -0.82 12.06 -17.73 -0.21 -1.04 16
26 N -0.27 -4.07 12.41 30.23 0.38 -3.69 16
27 N -0.10 -1.49 12.49 60.35 0.75 -0.74 16
28 C -0.19 -1.87 5.80 -90.62 -0.53 -2.39 16
29 C -0.16 -1.45 9.46 -26.69 -0.25 -1.70 16
30 C -0.16 -1.73 9.82 -26.69 -0.26 -1.99 16
31 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16
32 H 0.05 0.31 7.57 -51.93 -0.39 -0.08 16
33 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16
34 H 0.40 5.11 6.94 -40.82 -0.28 4.82 16
35 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16
36 H 0.04 0.62 7.14 -51.93 -0.37 0.25 16
37 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16
38 H 0.06 1.14 7.43 -51.93 -0.39 0.76 16
39 H 0.05 1.06 3.37 -51.93 -0.18 0.89 16
40 H 0.20 2.75 7.56 -52.49 -0.40 2.35 16
41 H 0.19 1.76 8.06 -52.49 -0.42 1.33 16
42 H 0.12 1.08 8.14 -51.93 -0.42 0.66 16
43 H 0.10 0.94 6.29 -51.93 -0.33 0.61 16
44 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16
45 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16
46 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16
LS Contribution 371.81 15.07 5.60 5.60
Total: -1.00 -31.07 371.81 -6.12 -37.19
By element:
Atomic # 1 Polarization: 14.63 SS G_CDS: -6.51 Total: 8.11 kcal
Atomic # 6 Polarization: 5.48 SS G_CDS: -1.32 Total: 4.16 kcal
Atomic # 7 Polarization: -57.72 SS G_CDS: 0.99 Total: -56.73 kcal
Atomic # 8 Polarization: -14.04 SS G_CDS: -0.71 Total: -14.74 kcal
Atomic # 14 Polarization: 20.59 SS G_CDS: -4.18 Total: 16.41 kcal
Total LS contribution 5.60 Total: 5.60 kcal
Total: -31.07 -6.12 -37.19 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001128944968.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 137.229 kcal
(2) G-P(sol) polarization free energy of solvation -31.071 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.159 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.118 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.189 kcal
(6) G-S(sol) free energy of system = (1) + (5) 100.041 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.94 seconds