Wall clock time and date at job start Tue Mar 31 2020 18:32:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42895 * 114.00192 * 2 1 4 4 H 1.09003 * 109.47538 * 24.89973 * 3 2 1 5 5 C 1.50699 * 109.47028 * 144.89712 * 3 2 1 6 6 O 1.21281 * 120.00246 * 5.00701 * 5 3 2 7 7 N 1.34776 * 120.00080 * 185.00013 * 5 3 2 8 8 C 1.46499 * 120.00240 * 180.02562 * 7 5 3 9 9 H 1.08998 * 110.92003 * 37.44737 * 8 7 5 10 10 C 1.54911 * 111.00418 * 273.54649 * 8 7 5 11 11 N 1.47422 * 104.83495 * 204.91152 * 10 8 7 12 12 C 1.36935 * 125.65172 * 204.15987 * 11 10 8 13 13 H 1.08000 * 120.00110 * 333.82019 * 12 11 10 14 14 C 1.38818 * 119.99984 * 153.81321 * 12 11 10 15 15 N 1.31614 * 119.99918 * 156.96566 * 14 12 11 16 16 Si 1.86805 * 119.99912 * 336.96750 * 14 12 11 17 17 H 1.48504 * 109.47062 * 91.31593 * 16 14 12 18 18 H 1.48497 * 109.46741 * 211.31563 * 16 14 12 19 19 H 1.48500 * 109.46848 * 331.31234 * 16 14 12 20 20 C 1.47027 * 108.70190 * 24.13073 * 11 10 8 21 21 C 1.54325 * 107.39948 * 358.86084 * 20 11 10 22 22 H 1.08996 * 110.72282 * 219.51906 * 21 20 11 23 23 N 1.46508 * 110.71908 * 96.25067 * 21 20 11 24 24 C 1.35307 * 125.86572 * 326.16094 * 23 21 20 25 25 C 1.35356 * 106.17529 * 179.90576 * 24 23 21 26 26 N 1.33774 * 106.49303 * 0.35818 * 25 24 23 27 27 N 1.28631 * 108.88883 * 359.77141 * 26 25 24 28 28 C 1.53001 * 109.47367 * 264.89734 * 3 2 1 29 29 C 1.53002 * 117.49764 * 9.19562 * 28 3 2 30 30 C 1.53001 * 117.50081 * 300.53225 * 28 3 2 31 31 H 1.08992 * 109.46833 * 294.85226 * 1 2 3 32 32 H 1.09001 * 109.46646 * 54.84704 * 1 2 3 33 33 H 1.08990 * 109.47448 * 174.84371 * 1 2 3 34 34 H 0.97001 * 120.00112 * 0.02562 * 7 5 3 35 35 H 1.09002 * 110.36625 * 86.07236 * 10 8 7 36 36 H 1.08998 * 110.36723 * 323.75515 * 10 8 7 37 37 H 0.97004 * 120.00102 * 180.02562 * 15 14 12 38 38 H 1.08998 * 109.88054 * 118.35375 * 20 11 10 39 39 H 1.09000 * 109.88412 * 239.36886 * 20 11 10 40 40 H 1.08001 * 126.91712 * 0.02637 * 24 23 21 41 41 H 1.07993 * 126.75147 * 180.12591 * 25 24 23 42 42 H 1.09001 * 115.54825 * 154.86011 * 28 3 2 43 43 H 1.09001 * 117.49829 * 359.97438 * 29 28 3 44 44 H 1.08996 * 117.50198 * 145.02207 * 29 28 3 45 45 H 1.08999 * 117.50030 * 214.98004 * 30 28 3 46 46 H 1.09000 * 117.49253 * 0.02562 * 30 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3066 2.0166 0.4327 5 6 3.2765 1.2914 0.8170 6 8 3.6936 0.2472 1.2714 7 7 3.9455 2.4394 1.0428 8 6 5.1767 2.4258 1.8365 9 1 5.7638 1.5312 1.6290 10 6 4.8637 2.5459 3.3489 11 7 6.0841 3.1218 3.9424 12 6 6.4750 2.9909 5.2483 13 1 5.7371 2.8207 6.0183 14 6 7.8196 3.0768 5.5822 15 7 8.1739 3.4046 6.8067 16 14 9.1262 2.7272 4.2937 17 1 9.4992 3.9922 3.6111 18 1 10.3252 2.1465 4.9496 19 1 8.5928 1.7650 3.2963 20 6 6.8125 3.8595 2.8998 21 6 6.0160 3.7096 1.5865 22 1 6.6896 3.5742 0.7403 23 7 5.1423 4.8664 1.3753 24 6 4.5187 5.5763 2.3438 25 6 3.8230 6.5490 1.7098 26 7 4.0457 6.3838 0.4011 27 7 4.8313 5.3786 0.2361 28 6 2.3350 1.7192 -1.4368 29 6 1.8100 0.8281 -2.5643 30 6 3.3028 0.8345 -2.2252 31 1 -0.3633 0.4319 0.9324 32 1 -0.3633 0.5917 -0.8403 33 1 -0.3634 -1.0234 -0.0923 34 1 3.6118 3.2747 0.6796 35 1 4.6628 1.5625 3.7740 36 1 4.0142 3.2099 3.5089 37 1 9.1136 3.4650 7.0400 38 1 6.8837 4.9126 3.1720 39 1 7.8110 3.4399 2.7777 40 1 4.5678 5.4030 3.4087 41 1 3.2062 7.3068 2.1698 42 1 2.3719 2.7931 -1.6198 43 1 1.2337 -0.0532 -2.2825 44 1 1.5021 1.3156 -3.4892 45 1 3.9762 1.3263 -2.9271 46 1 3.7078 -0.0425 -1.7203 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001128944968.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:02 Heat of formation + Delta-G solvation = 100.040819 kcal Electronic energy + Delta-G solvation = -30574.883595 eV Core-core repulsion = 26505.060708 eV Total energy + Delta-G solvation = -4069.822888 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.25043 -40.40659 -38.89590 -37.66140 -36.10500 -34.44555 -33.64105 -32.08858 -30.87234 -29.98621 -29.04305 -27.89623 -26.27743 -24.80984 -23.12937 -22.58585 -22.49822 -21.86628 -20.78292 -20.54912 -20.09323 -18.09369 -17.63246 -17.21010 -17.07813 -16.40423 -15.96134 -15.76903 -15.41438 -14.95296 -14.83392 -14.62334 -14.53585 -13.88387 -13.82323 -13.66576 -13.42209 -13.18290 -12.95678 -12.74990 -12.19793 -12.05540 -11.74053 -11.66061 -11.63643 -11.58907 -11.42284 -11.18744 -10.92256 -10.87943 -10.82899 -10.66154 -10.37118 -10.08227 -10.00357 -9.72476 -9.52337 -9.25484 -9.08991 -8.80261 -7.31005 -6.19210 -3.56685 1.69179 2.31110 2.53100 2.66011 2.72551 3.14025 3.31097 3.33725 3.44513 3.77603 4.26211 4.30997 4.32704 4.39754 4.53068 4.60308 4.60759 4.75544 4.89720 4.94729 5.02735 5.03319 5.13653 5.14898 5.17065 5.23416 5.34393 5.38953 5.40457 5.44220 5.47692 5.66174 5.82694 5.87924 5.89113 6.00583 6.03130 6.15704 6.25547 6.34561 6.43085 6.71379 6.75927 7.37551 7.43814 8.08186 8.15656 8.57700 8.59354 9.42268 9.85736 10.96219 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012760 B = 0.004102 C = 0.003551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2193.745204 B = 6824.508311 C = 7882.883855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.354 6.354 3 C 0.104 3.896 4 H 0.089 0.911 5 C 0.521 3.479 6 O -0.511 6.511 7 N -0.716 5.716 8 C 0.125 3.875 9 H 0.121 0.879 10 C 0.118 3.882 11 N -0.599 5.599 12 C -0.253 4.253 13 H 0.095 0.905 14 C 0.036 3.964 15 N -0.893 5.893 16 Si 0.873 3.127 17 H -0.284 1.284 18 H -0.295 1.295 19 H -0.271 1.271 20 C 0.115 3.885 21 C 0.120 3.880 22 H 0.127 0.873 23 N -0.280 5.280 24 C -0.021 4.021 25 C -0.065 4.065 26 N -0.274 5.274 27 N -0.099 5.099 28 C -0.186 4.186 29 C -0.163 4.163 30 C -0.164 4.164 31 H 0.044 0.956 32 H 0.046 0.954 33 H 0.090 0.910 34 H 0.398 0.602 35 H 0.068 0.932 36 H 0.036 0.964 37 H 0.267 0.733 38 H 0.060 0.940 39 H 0.054 0.946 40 H 0.196 0.804 41 H 0.188 0.812 42 H 0.117 0.883 43 H 0.103 0.897 44 H 0.094 0.906 45 H 0.096 0.904 46 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.314 -0.030 -15.463 20.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.271 6.271 3 C 0.042 3.958 4 H 0.107 0.893 5 C 0.306 3.694 6 O -0.385 6.385 7 N -0.370 5.370 8 C 0.018 3.982 9 H 0.138 0.862 10 C -0.008 4.008 11 N -0.327 5.327 12 C -0.380 4.380 13 H 0.113 0.887 14 C -0.165 4.165 15 N -0.534 5.534 16 Si 0.703 3.297 17 H -0.212 1.212 18 H -0.223 1.223 19 H -0.196 1.196 20 C -0.011 4.011 21 C 0.017 3.983 22 H 0.145 0.855 23 N -0.074 5.074 24 C -0.172 4.172 25 C -0.222 4.222 26 N -0.141 5.141 27 N -0.078 5.078 28 C -0.205 4.205 29 C -0.200 4.200 30 C -0.201 4.201 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.109 0.891 34 H 0.233 0.767 35 H 0.086 0.914 36 H 0.054 0.946 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.071 0.929 40 H 0.213 0.787 41 H 0.205 0.795 42 H 0.135 0.865 43 H 0.121 0.879 44 H 0.113 0.887 45 H 0.114 0.886 46 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -12.550 -1.079 -16.426 20.699 hybrid contribution 0.565 0.565 0.469 0.926 sum -11.985 -0.514 -15.957 19.963 Atomic orbital electron populations 1.22937 0.80589 1.03202 1.00340 1.88026 1.19710 1.24775 1.94585 1.21339 0.93849 0.86926 0.93664 0.89279 1.20257 0.85231 0.83736 0.80163 1.90752 1.67318 1.30735 1.49696 1.45758 1.26300 1.10222 1.54765 1.22742 0.85473 0.96815 0.93205 0.86172 1.22210 0.90913 0.98702 0.88987 1.44631 1.23821 1.57402 1.06875 1.18556 0.92246 1.47382 0.79771 0.88717 1.25177 0.96897 0.98767 0.95693 1.69820 1.17245 1.47265 1.19093 0.87043 0.82067 0.78701 0.81911 1.21157 1.22270 1.19646 1.22024 0.95029 0.98549 0.85479 1.23190 0.91326 0.81649 1.02107 0.85496 1.47456 1.32321 1.22418 1.05174 1.23957 0.99053 0.95605 0.98600 1.23578 1.05736 1.02394 0.90452 1.75061 1.11602 1.10090 1.17325 1.78291 1.14443 1.07692 1.07417 1.22717 1.08030 0.98308 0.91425 1.22952 0.97512 1.01792 0.97738 1.22938 0.92675 1.01931 1.02591 0.93735 0.93494 0.89111 0.76661 0.91351 0.94572 0.92278 0.92203 0.92927 0.78684 0.79509 0.86458 0.87867 0.88732 0.88580 0.88191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.99 101.05 1.01 1.22 16 2 O -0.35 -4.39 8.59 -55.09 -0.47 -4.87 16 3 C 0.10 1.21 2.96 -27.88 -0.08 1.12 16 4 H 0.09 0.86 7.76 -51.93 -0.40 0.46 16 5 C 0.52 7.71 6.84 -10.99 -0.08 7.63 16 6 O -0.51 -9.65 16.25 -14.30 -0.23 -9.88 16 7 N -0.72 -9.85 5.14 -51.60 -0.27 -10.11 16 8 C 0.12 1.95 3.18 -65.65 -0.21 1.74 16 9 H 0.12 2.02 7.73 -51.93 -0.40 1.62 16 10 C 0.12 2.13 6.41 -2.53 -0.02 2.12 16 11 N -0.60 -12.62 3.09 -170.07 -0.53 -13.14 16 12 C -0.25 -6.49 10.52 -15.06 -0.16 -6.65 16 13 H 0.10 2.61 8.06 -52.49 -0.42 2.19 16 14 C 0.04 0.96 5.42 -17.43 -0.09 0.87 16 15 N -0.89 -25.67 13.97 55.49 0.78 -24.89 16 16 Si 0.87 20.59 24.58 -169.99 -4.18 16.41 16 17 H -0.28 -6.45 7.01 56.52 0.40 -6.06 16 18 H -0.30 -7.18 7.11 56.52 0.40 -6.78 16 19 H -0.27 -6.20 6.94 56.52 0.39 -5.81 16 20 C 0.12 2.15 4.92 -3.06 -0.02 2.13 16 21 C 0.12 1.81 3.99 -65.96 -0.26 1.54 16 22 H 0.13 1.68 8.14 -51.93 -0.42 1.26 16 23 N -0.28 -4.03 2.27 -52.85 -0.12 -4.15 16 24 C -0.02 -0.29 9.24 -17.05 -0.16 -0.45 16 25 C -0.06 -0.82 12.06 -17.73 -0.21 -1.04 16 26 N -0.27 -4.07 12.41 30.23 0.38 -3.69 16 27 N -0.10 -1.49 12.49 60.35 0.75 -0.74 16 28 C -0.19 -1.87 5.80 -90.62 -0.53 -2.39 16 29 C -0.16 -1.45 9.46 -26.69 -0.25 -1.70 16 30 C -0.16 -1.73 9.82 -26.69 -0.26 -1.99 16 31 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.05 0.31 7.57 -51.93 -0.39 -0.08 16 33 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.40 5.11 6.94 -40.82 -0.28 4.82 16 35 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 36 H 0.04 0.62 7.14 -51.93 -0.37 0.25 16 37 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 38 H 0.06 1.14 7.43 -51.93 -0.39 0.76 16 39 H 0.05 1.06 3.37 -51.93 -0.18 0.89 16 40 H 0.20 2.75 7.56 -52.49 -0.40 2.35 16 41 H 0.19 1.76 8.06 -52.49 -0.42 1.33 16 42 H 0.12 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.10 0.94 6.29 -51.93 -0.33 0.61 16 44 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 46 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 371.81 15.07 5.60 5.60 Total: -1.00 -31.07 371.81 -6.12 -37.19 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: -6.51 Total: 8.11 kcal Atomic # 6 Polarization: 5.48 SS G_CDS: -1.32 Total: 4.16 kcal Atomic # 7 Polarization: -57.72 SS G_CDS: 0.99 Total: -56.73 kcal Atomic # 8 Polarization: -14.04 SS G_CDS: -0.71 Total: -14.74 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -4.18 Total: 16.41 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.07 -6.12 -37.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128944968.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.229 kcal (2) G-P(sol) polarization free energy of solvation -31.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds